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The map label for this gene is ybbI [C]

Identifier: 146283931

GI number: 146283931

Start: 3900090

End: 3900539

Strand: Direct

Name: ybbI [C]

Synonym: PST_3614

Alternate gene names: 146283931

Gene position: 3900090-3900539 (Clockwise)

Preceding gene: 146283930

Following gene: 146283932

Centisome position: 85.39

GC content: 67.33

Gene sequence:

>450_bases
ATGAACATCGGTCAGGCAGCCAAGCACAGCGGCCTTACGGCGAAGATGATCCGCTACTACGAATCCATCGGTCTGCTCAC
GCCCGCCGGGCGTGGCGCCAATGGCTACCGCCACTACAACGAGCGCGACCTGCACCAGCTGGCCTTCATCCGCCGCGCTC
GTGATCTGGGCTTCTCCCTCGAGGAGGTCGGCAAGCTGCTGGCGCTTTGGCAGGACCGCCAGCGCGCCAGCGCCGACGTG
AAAGCCCTGGCCGGCGCGCATATCGACGAGCTGAACCGCAAGATCGCCGAGCTGGTCGGCCTGCGCGACACCCTGCAGGA
GTTGGTCGACCACTGCCAGGGTGATGATCGGCCGGACTGCCCGATCCTGCAGGGCATCGAAAGCGGCTGCTGCAGCACGC
GTCCCGCACCGTCCCGGACAGGCATACCAGCCCGGCCGGACAGGGCCTGA

Upstream 100 bases:

>100_bases
GTGGTGGCCGGTGCGGCAATGGCCCTGTCGAGCGTCAGCGTGGTGAGCAACGCCCTGCTGCTGCGCTCCTGGAAACCGGA
AGAATGATCGGGAGCACGCC

Downstream 100 bases:

>100_bases
TCCTCGCGCGGGCGTTCACACGCCCGCCGATCGCTCGCTGCCGCGCAGGCAAGCGGGCAACCGTCCCTCGGCTGACATTC
AAGTTCGCATGCGCCAGGCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MNIGQAAKHSGLTAKMIRYYESIGLLTPAGRGANGYRHYNERDLHQLAFIRRARDLGFSLEEVGKLLALWQDRQRASADV
KALAGAHIDELNRKIAELVGLRDTLQELVDHCQGDDRPDCPILQGIESGCCSTRPAPSRTGIPARPDRA

Sequences:

>Translated_149_residues
MNIGQAAKHSGLTAKMIRYYESIGLLTPAGRGANGYRHYNERDLHQLAFIRRARDLGFSLEEVGKLLALWQDRQRASADV
KALAGAHIDELNRKIAELVGLRDTLQELVDHCQGDDRPDCPILQGIESGCCSTRPAPSRTGIPARPDRA
>Mature_149_residues
MNIGQAAKHSGLTAKMIRYYESIGLLTPAGRGANGYRHYNERDLHQLAFIRRARDLGFSLEEVGKLLALWQDRQRASADV
KALAGAHIDELNRKIAELVGLRDTLQELVDHCQGDDRPDCPILQGIESGCCSTRPAPSRTGIPARPDRA

Specific function: Copper responsive transcription regulator [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786695, Length=134, Percent_Identity=49.2537313432836, Blast_Score=133, Evalue=5e-33,
Organism=Escherichia coli, GI1789687, Length=130, Percent_Identity=37.6923076923077, Blast_Score=84, Evalue=3e-18,
Organism=Escherichia coli, GI1790498, Length=120, Percent_Identity=33.3333333333333, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011789
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 16445; Mature: 16445

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIGQAAKHSGLTAKMIRYYESIGLLTPAGRGANGYRHYNERDLHQLAFIRRARDLGFSL
CCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCH
EEVGKLLALWQDRQRASADVKALAGAHIDELNRKIAELVGLRDTLQELVDHCQGDDRPDC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PILQGIESGCCSTRPAPSRTGIPARPDRA
HHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNIGQAAKHSGLTAKMIRYYESIGLLTPAGRGANGYRHYNERDLHQLAFIRRARDLGFSL
CCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCH
EEVGKLLALWQDRQRASADVKALAGAHIDELNRKIAELVGLRDTLQELVDHCQGDDRPDC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PILQGIESGCCSTRPAPSRTGIPARPDRA
HHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]