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The map label for this gene is yccM [C]

Identifier: 146283823

GI number: 146283823

Start: 3796246

End: 3797619

Strand: Direct

Name: yccM [C]

Synonym: PST_3506

Alternate gene names: 146283823

Gene position: 3796246-3797619 (Clockwise)

Preceding gene: 146283822

Following gene: 146283827

Centisome position: 83.12

GC content: 67.25

Gene sequence:

>1374_bases
GTGATCATCCAGGCGCCGTGGCTGGCGCGACTCGGTGATCTGCTGCGCCAGCATGCGAAGGCCATCCGCACGCTGCAGTG
GCTGGTGGTGGGCTTCTACCTGACGCTGCTGGTGATTCCCGCCTTTCTCGACCTGCCGCCGGCCCAGGCCGGCATGCTCG
ACAACCTGACGGTGCTGGCGCAGTTCATCTTCTGGGGGCTGTGGTGGCCCTTCGTGCTGCTGTCGATGATCTTCTTCGGC
CGCCTGTGGTGCGGCGTACTCTGCCCCGAGGGCTCACTCAGCGAGTGGATCAGCTGGCGTGGGCTGAACAAGCGCACGCC
GCGCTGGGTGCGCTGGAGCGGCTGGCCGACCATTGCCTTCATCCTCACCACCGTCTATGGCCAGCTGATCAGTGTCTACG
ACTACGCTCAGGCGGCGCTGCTGATTCTCGGCGGCTCCACCGTCGCGGCGATGCTGGTGGGCTTTCTCTACGGCCGCGGC
AAGCGCGTCTGGTGCCGCCATCTGTGCCCGGTCAGCGGCGTGTTCGCCCTGCTCGCCCGGCTGGCGCCGGTGCACTACAA
GGTCGATGAGCAGCGCTGGCTGGAAAACCGCGAACCGCACCTGCCGACGCCCAACTGTGCGCCGTTGATCGACATTCGCC
GCATGCAGGGCAACGCCGACTGCCATGCCTGCGGCCGCTGCAGCGGACAGCGCGGCGCAGTGCAGCTGAGCGCCCGCTCA
CCAAACGCTGAAATCCTCATTGTCGGCGGCCAGCGGCAAGGCGAGCACTGGGACAGCACCCTGCTGCTGTTCGGCATGAT
CGGCCTGGCCATGGGCGCGTTCCAGTGGACGGTCAGCCCCTGGTTCATCGCCCTCAAGCAGGCCGCGGCGGAATGGCTGG
TGGATCGCGATATCTTCTGGCCGCTGGAAGCCAACGCGCCCTGGTGGCTGCTGACCCACTATCCGCAGGCCAACGATGCC
TTCACCTGGCTCGATGGTGCGGCGATCCTCACCTATATCTTCGGCGCCTCGCTGCTGATTGGCGGCGCACTCTGGCTATT
GCTACGTGCAGCCGTGCGCGTCATGCGCCGCGGCGACAATGTGTTCCAGCACCTGGCGCTGGCGCTGGTGCCGCTGGGCG
GCGCCGGGCTGTTTCTCGGCCTCTCGGCGACCACGGTCAAGCTGCTGCGCTACGAGGGCTTTCTGCTGGCCTGGGCACAA
CCGGCTCGCGCCGCGCTGCTGATCGGCGCCATCGCATGGAGCCTGTATCTGGCCTGGAACGTCATCAGTCGCCACGGCGG
CAACGGCCTGCGCCGGTTGCTGGCGTTTGCCTGCGTCAACGCCGGCTGCGCGCTGGTGGGCTATGGCTGGTGGTTGCAGT
TCTGGGGCTGGTGA

Upstream 100 bases:

>100_bases
TACCGTCACTGGCCGCGGTGGTGACACTCGCCTTGTACTGGCTCGCCGCATGGGCCTGGCTCAAACCCCGGGCCCAGGTG
CAGCTCGCTGCGAGGCCGGC

Downstream 100 bases:

>100_bases
GCCGCCTGCTCATGGTGGGCTCAAGCCCACCCGCGTTCCCCCTCTTCACTCCAGCAAGCCCGGCCCCGGGGCCGGGGGCT
GCAGGGAGCACCTGCGACTA

Product: polyferredoxin

Products: NA

Alternate protein names: Regulatory Protein; Polyferredoxin-Like Protein; Polyferredoxin; Polyferredoxin-Like; Transcriptional Regulator; Ferredoxin; Nitrogen Assimilation Regulatory Protein; Polyferredoxin Protein

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MIIQAPWLARLGDLLRQHAKAIRTLQWLVVGFYLTLLVIPAFLDLPPAQAGMLDNLTVLAQFIFWGLWWPFVLLSMIFFG
RLWCGVLCPEGSLSEWISWRGLNKRTPRWVRWSGWPTIAFILTTVYGQLISVYDYAQAALLILGGSTVAAMLVGFLYGRG
KRVWCRHLCPVSGVFALLARLAPVHYKVDEQRWLENREPHLPTPNCAPLIDIRRMQGNADCHACGRCSGQRGAVQLSARS
PNAEILIVGGQRQGEHWDSTLLLFGMIGLAMGAFQWTVSPWFIALKQAAAEWLVDRDIFWPLEANAPWWLLTHYPQANDA
FTWLDGAAILTYIFGASLLIGGALWLLLRAAVRVMRRGDNVFQHLALALVPLGGAGLFLGLSATTVKLLRYEGFLLAWAQ
PARAALLIGAIAWSLYLAWNVISRHGGNGLRRLLAFACVNAGCALVGYGWWLQFWGW

Sequences:

>Translated_457_residues
MIIQAPWLARLGDLLRQHAKAIRTLQWLVVGFYLTLLVIPAFLDLPPAQAGMLDNLTVLAQFIFWGLWWPFVLLSMIFFG
RLWCGVLCPEGSLSEWISWRGLNKRTPRWVRWSGWPTIAFILTTVYGQLISVYDYAQAALLILGGSTVAAMLVGFLYGRG
KRVWCRHLCPVSGVFALLARLAPVHYKVDEQRWLENREPHLPTPNCAPLIDIRRMQGNADCHACGRCSGQRGAVQLSARS
PNAEILIVGGQRQGEHWDSTLLLFGMIGLAMGAFQWTVSPWFIALKQAAAEWLVDRDIFWPLEANAPWWLLTHYPQANDA
FTWLDGAAILTYIFGASLLIGGALWLLLRAAVRVMRRGDNVFQHLALALVPLGGAGLFLGLSATTVKLLRYEGFLLAWAQ
PARAALLIGAIAWSLYLAWNVISRHGGNGLRRLLAFACVNAGCALVGYGWWLQFWGW
>Mature_457_residues
MIIQAPWLARLGDLLRQHAKAIRTLQWLVVGFYLTLLVIPAFLDLPPAQAGMLDNLTVLAQFIFWGLWWPFVLLSMIFFG
RLWCGVLCPEGSLSEWISWRGLNKRTPRWVRWSGWPTIAFILTTVYGQLISVYDYAQAALLILGGSTVAAMLVGFLYGRG
KRVWCRHLCPVSGVFALLARLAPVHYKVDEQRWLENREPHLPTPNCAPLIDIRRMQGNADCHACGRCSGQRGAVQLSARS
PNAEILIVGGQRQGEHWDSTLLLFGMIGLAMGAFQWTVSPWFIALKQAAAEWLVDRDIFWPLEANAPWWLLTHYPQANDA
FTWLDGAAILTYIFGASLLIGGALWLLLRAAVRVMRRGDNVFQHLALALVPLGGAGLFLGLSATTVKLLRYEGFLLAWAQ
PARAALLIGAIAWSLYLAWNVISRHGGNGLRRLLAFACVNAGCALVGYGWWLQFWGW

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51088; Mature: 51088

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS00052 RIBOSOMAL_S7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIQAPWLARLGDLLRQHAKAIRTLQWLVVGFYLTLLVIPAFLDLPPAQAGMLDNLTVLA
CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
QFIFWGLWWPFVLLSMIFFGRLWCGVLCPEGSLSEWISWRGLNKRTPRWVRWSGWPTIAF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEECCCCHHHH
ILTTVYGQLISVYDYAQAALLILGGSTVAAMLVGFLYGRGKRVWCRHLCPVSGVFALLAR
HHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHH
LAPVHYKVDEQRWLENREPHLPTPNCAPLIDIRRMQGNADCHACGRCSGQRGAVQLSARS
HCCCCEECCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECC
PNAEILIVGGQRQGEHWDSTLLLFGMIGLAMGAFQWTVSPWFIALKQAAAEWLVDRDIFW
CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEE
PLEANAPWWLLTHYPQANDAFTWLDGAAILTYIFGASLLIGGALWLLLRAAVRVMRRGDN
EEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
VFQHLALALVPLGGAGLFLGLSATTVKLLRYEGFLLAWAQPARAALLIGAIAWSLYLAWN
HHHHHHHHHHCCCCCHHEEECHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHH
VISRHGGNGLRRLLAFACVNAGCALVGYGWWLQFWGW
HHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHCCC
>Mature Secondary Structure
MIIQAPWLARLGDLLRQHAKAIRTLQWLVVGFYLTLLVIPAFLDLPPAQAGMLDNLTVLA
CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
QFIFWGLWWPFVLLSMIFFGRLWCGVLCPEGSLSEWISWRGLNKRTPRWVRWSGWPTIAF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEECCCCHHHH
ILTTVYGQLISVYDYAQAALLILGGSTVAAMLVGFLYGRGKRVWCRHLCPVSGVFALLAR
HHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHH
LAPVHYKVDEQRWLENREPHLPTPNCAPLIDIRRMQGNADCHACGRCSGQRGAVQLSARS
HCCCCEECCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECC
PNAEILIVGGQRQGEHWDSTLLLFGMIGLAMGAFQWTVSPWFIALKQAAAEWLVDRDIFW
CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEE
PLEANAPWWLLTHYPQANDAFTWLDGAAILTYIFGASLLIGGALWLLLRAAVRVMRRGDN
EEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
VFQHLALALVPLGGAGLFLGLSATTVKLLRYEGFLLAWAQPARAALLIGAIAWSLYLAWN
HHHHHHHHHHCCCCCHHEEECHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHH
VISRHGGNGLRRLLAFACVNAGCALVGYGWWLQFWGW
HHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA