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The map label for this gene is ychF [H]

Identifier: 146283517

GI number: 146283517

Start: 3436690

End: 3437790

Strand: Direct

Name: ychF [H]

Synonym: PST_3192

Alternate gene names: 146283517

Gene position: 3436690-3437790 (Clockwise)

Preceding gene: 146283516

Following gene: 146283518

Centisome position: 75.24

GC content: 60.76

Gene sequence:

>1101_bases
ATGGGATTCAACTGCGGCATCGTCGGTCTGCCCAACGTCGGCAAGTCCACCCTGTTCAACGCCCTGACCAAATCCGGCAT
CGCGGCTGAGAACTTCCCGTTCTGTACCATCGAGCCGAACAGCGGCATCGTGCCGATGCCCGATCCACGTCTCGATGCGC
TGGCGGCGATCGTCAAGCCAGAGCGGGTGATCCCCACCACCATGGAGTTCGTCGATATCGCCGGCTTGGTGGAAGGTGCC
TCGAAAGGTGAAGGCCTGGGCAACAAGTTCCTTGCCAATATCCGCGAGACCGATGCCATCGCCCACGTCGTGCGCTGCTT
CCAGGATGACAACGTGATTCACGTTGCCAACAGCGTCGACCCCAAGCGCGACATCGAGATCATCGACCTCGAACTGATCT
TTGCCGACCTCGACAGCTGCGAGAAGCAGCTGCAGAAAGTCACCCGCAACGCCAAGGGTGGCGACAAGGACGCCGTGGCG
CAGAAAGCCCTGCTCGAGAAGCTCATCCCACACTTCACCGAGGGCAAGCCGGCGCGCACCCTGCTGAAGACCTTGGGAAC
CGAAGAAAAGGCCATGGTGCGCGGCTTCCACCTACTCACCAGCAAGCCGGTGATGTACATCGCCAACGTCGCCGAAGACG
GCTTCGAGAACAACCCGCTGCTCGATGTGGTCCAGGCCATCGCCGACGCCGAGGGCGCACCCGTAGTACCGGTGTGCAAC
AAGATCGAAGCGGAAATCGCCGAACTCGATGACGGCGAAGAAAAGGACATGTTCCTAGAATCCCTCGGCCTCGAAGAGCC
TGGCCTGAACCGCGTGATTCGCGCCGGCTATGAACTGCTCAACCTGCAGACCTACTTCACCGCCGGCGTGAAGGAAGTTC
GTGCCTGGACGGTCAAGGTCGGAGCCACCGCACCGCAGGCTGCCGCGGTGATCCACACCGACTTCGAGAAAGGCTTTATC
CGCGCCGAAGTAGTCGCCTACGACGACTTCATCGCCTACAAGGGTGAAGCAGGCGCTAAGGAAGCCGGCAAGTGGCGCCT
GGAAGGCAAGGAGTACATCGTCAAGGACGGCGACGTGATGCACTTCCGCTTCAACGTCTGA

Upstream 100 bases:

>100_bases
GCTGGACGTCGTGCCAGAAATCCTGACCGGCGACTGGACCCGCGCCATGCAGCGCCTGCACAGCCAGAAGGCCTGAACCT
AACTCCGAGGCAAGATCACC

Downstream 100 bases:

>100_bases
CGATTTTTTCTGAACTCAGGAGCGCTCAATAGCGCTCGATGGAATGGGCAGGCCTTTTGAAATCAATAGCTTGCCTAACA
ATACGGTCTGCTGAGCGTTC

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MGFNCGIVGLPNVGKSTLFNALTKSGIAAENFPFCTIEPNSGIVPMPDPRLDALAAIVKPERVIPTTMEFVDIAGLVEGA
SKGEGLGNKFLANIRETDAIAHVVRCFQDDNVIHVANSVDPKRDIEIIDLELIFADLDSCEKQLQKVTRNAKGGDKDAVA
QKALLEKLIPHFTEGKPARTLLKTLGTEEKAMVRGFHLLTSKPVMYIANVAEDGFENNPLLDVVQAIADAEGAPVVPVCN
KIEAEIAELDDGEEKDMFLESLGLEEPGLNRVIRAGYELLNLQTYFTAGVKEVRAWTVKVGATAPQAAAVIHTDFEKGFI
RAEVVAYDDFIAYKGEAGAKEAGKWRLEGKEYIVKDGDVMHFRFNV

Sequences:

>Translated_366_residues
MGFNCGIVGLPNVGKSTLFNALTKSGIAAENFPFCTIEPNSGIVPMPDPRLDALAAIVKPERVIPTTMEFVDIAGLVEGA
SKGEGLGNKFLANIRETDAIAHVVRCFQDDNVIHVANSVDPKRDIEIIDLELIFADLDSCEKQLQKVTRNAKGGDKDAVA
QKALLEKLIPHFTEGKPARTLLKTLGTEEKAMVRGFHLLTSKPVMYIANVAEDGFENNPLLDVVQAIADAEGAPVVPVCN
KIEAEIAELDDGEEKDMFLESLGLEEPGLNRVIRAGYELLNLQTYFTAGVKEVRAWTVKVGATAPQAAAVIHTDFEKGFI
RAEVVAYDDFIAYKGEAGAKEAGKWRLEGKEYIVKDGDVMHFRFNV
>Mature_365_residues
GFNCGIVGLPNVGKSTLFNALTKSGIAAENFPFCTIEPNSGIVPMPDPRLDALAAIVKPERVIPTTMEFVDIAGLVEGAS
KGEGLGNKFLANIRETDAIAHVVRCFQDDNVIHVANSVDPKRDIEIIDLELIFADLDSCEKQLQKVTRNAKGGDKDAVAQ
KALLEKLIPHFTEGKPARTLLKTLGTEEKAMVRGFHLLTSKPVMYIANVAEDGFENNPLLDVVQAIADAEGAPVVPVCNK
IEAEIAELDDGEEKDMFLESLGLEEPGLNRVIRAGYELLNLQTYFTAGVKEVRAWTVKVGATAPQAAAVIHTDFEKGFIR
AEVVAYDDFIAYKGEAGAKEAGKWRLEGKEYIVKDGDVMHFRFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=366, Percent_Identity=44.2622950819672, Blast_Score=298, Evalue=4e-81,
Organism=Homo sapiens, GI58761502, Length=228, Percent_Identity=37.280701754386, Blast_Score=149, Evalue=5e-36,
Organism=Escherichia coli, GI1787454, Length=366, Percent_Identity=71.5846994535519, Blast_Score=540, Evalue=1e-155,
Organism=Escherichia coli, GI1789574, Length=129, Percent_Identity=29.4573643410853, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17509631, Length=366, Percent_Identity=43.1693989071038, Blast_Score=284, Evalue=5e-77,
Organism=Saccharomyces cerevisiae, GI6319499, Length=374, Percent_Identity=38.5026737967914, Blast_Score=244, Evalue=1e-65,
Organism=Saccharomyces cerevisiae, GI6321773, Length=380, Percent_Identity=33.6842105263158, Blast_Score=204, Evalue=2e-53,
Organism=Saccharomyces cerevisiae, GI6321649, Length=179, Percent_Identity=34.0782122905028, Blast_Score=80, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24640873, Length=365, Percent_Identity=43.8356164383562, Blast_Score=288, Evalue=3e-78,
Organism=Drosophila melanogaster, GI24640877, Length=365, Percent_Identity=43.8356164383562, Blast_Score=288, Evalue=3e-78,
Organism=Drosophila melanogaster, GI24640875, Length=365, Percent_Identity=43.8356164383562, Blast_Score=288, Evalue=3e-78,
Organism=Drosophila melanogaster, GI24640879, Length=328, Percent_Identity=41.1585365853659, Blast_Score=231, Evalue=7e-61,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 39842; Mature: 39711

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFNCGIVGLPNVGKSTLFNALTKSGIAAENFPFCTIEPNSGIVPMPDPRLDALAAIVKP
CCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCC
ERVIPTTMEFVDIAGLVEGASKGEGLGNKFLANIRETDAIAHVVRCFQDDNVIHVANSVD
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PKRDIEIIDLELIFADLDSCEKQLQKVTRNAKGGDKDAVAQKALLEKLIPHFTEGKPART
CCCCCEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
LLKTLGTEEKAMVRGFHLLTSKPVMYIANVAEDGFENNPLLDVVQAIADAEGAPVVPVCN
HHHHHCCCHHHHHHHHHHHCCCCCEEEEHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHH
KIEAEIAELDDGEEKDMFLESLGLEEPGLNRVIRAGYELLNLQTYFTAGVKEVRAWTVKV
HHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
GATAPQAAAVIHTDFEKGFIRAEVVAYDDFIAYKGEAGAKEAGKWRLEGKEYIVKDGDVM
CCCCCCCEEEEEECCCCCCEEEEEEEEECCEEECCCCCCCCCCCEEECCCEEEEECCCEE
HFRFNV
EEEECC
>Mature Secondary Structure 
GFNCGIVGLPNVGKSTLFNALTKSGIAAENFPFCTIEPNSGIVPMPDPRLDALAAIVKP
CCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCC
ERVIPTTMEFVDIAGLVEGASKGEGLGNKFLANIRETDAIAHVVRCFQDDNVIHVANSVD
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PKRDIEIIDLELIFADLDSCEKQLQKVTRNAKGGDKDAVAQKALLEKLIPHFTEGKPART
CCCCCEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
LLKTLGTEEKAMVRGFHLLTSKPVMYIANVAEDGFENNPLLDVVQAIADAEGAPVVPVCN
HHHHHCCCHHHHHHHHHHHCCCCCEEEEHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHH
KIEAEIAELDDGEEKDMFLESLGLEEPGLNRVIRAGYELLNLQTYFTAGVKEVRAWTVKV
HHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
GATAPQAAAVIHTDFEKGFIRAEVVAYDDFIAYKGEAGAKEAGKWRLEGKEYIVKDGDVM
CCCCCCCEEEEEECCCCCCEEEEEEEEECCEEECCCCCCCCCCCEEECCCEEEEECCCEE
HFRFNV
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA