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The map label for this gene is sodB [H]

Identifier: 146283459

GI number: 146283459

Start: 3370748

End: 3371329

Strand: Direct

Name: sodB [H]

Synonym: PST_3132

Alternate gene names: 146283459

Gene position: 3370748-3371329 (Clockwise)

Preceding gene: 146283458

Following gene: 146283460

Centisome position: 73.8

GC content: 60.82

Gene sequence:

>582_bases
ATGGCTTTCGAATTGCCGCCGCTGCCTTACGAAAAGAACGCCCTCGAGCCGCACATGTCCGCCGAGACGCTCGACTACCA
TCACGACAAGCACCACGCTGCCTACGTGACCAATCTGAACAACCTGATCCCAGGCACCGAGTTCGAAGGCAAGGATCTGG
AATCCATCATCAAGACCTCTTCCGGTGGCATCTTCAACAACGCCGCCCAGGTCTGGAACCACACCTTCTTCTGGAACTGC
CTGGCGCCGAACGCCGGTGGCCAGCCGACCGGCGCCCTGGCTGACGCCATCAACGCCTCCTTCGGCTCGTTCGACAAGTT
CAAGGAAGAGTTCACCAAGACCGCCATCGGCACCTTCGGCTCCGGCTGGGCCTGGCTGGTCAAGAAGTCCGACGGCAGCC
TGGGTCTGGCCAGCACCATCGGTGCCGGCAACCCGATGACCGCAGGCGACAAGCCGCTGCTGACCTGCGATGTCTGGGAG
CACGCCTACTACATCGACTACCGCAACGCCCGTCCGAAGTTTGTCGAAGCGTTTTGGAACCTGGTGAACTGGGACTTCGT
CGCGAAGAACTTCGCAGGCTAA

Upstream 100 bases:

>100_bases
GGACGCGATGCATCGCCTGCTCACCGGCAACGCCGGCAAACCCCGCACGTCCCTCCGAGCTGGCCGCATCAATCCTCGAC
ACCTGAGTAGGAGATACATC

Downstream 100 bases:

>100_bases
GCCCAAGCCCCAGTAGTGAATCAAAATGCCCGCGCTCATGCGGGCATTTTCATTTAAGGCTCGGGCACGGCCTGCCGTTA
TAAAGATGCAGGGCAGGACG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MAFELPPLPYEKNALEPHMSAETLDYHHDKHHAAYVTNLNNLIPGTEFEGKDLESIIKTSSGGIFNNAAQVWNHTFFWNC
LAPNAGGQPTGALADAINASFGSFDKFKEEFTKTAIGTFGSGWAWLVKKSDGSLGLASTIGAGNPMTAGDKPLLTCDVWE
HAYYIDYRNARPKFVEAFWNLVNWDFVAKNFAG

Sequences:

>Translated_193_residues
MAFELPPLPYEKNALEPHMSAETLDYHHDKHHAAYVTNLNNLIPGTEFEGKDLESIIKTSSGGIFNNAAQVWNHTFFWNC
LAPNAGGQPTGALADAINASFGSFDKFKEEFTKTAIGTFGSGWAWLVKKSDGSLGLASTIGAGNPMTAGDKPLLTCDVWE
HAYYIDYRNARPKFVEAFWNLVNWDFVAKNFAG
>Mature_192_residues
AFELPPLPYEKNALEPHMSAETLDYHHDKHHAAYVTNLNNLIPGTEFEGKDLESIIKTSSGGIFNNAAQVWNHTFFWNCL
APNAGGQPTGALADAINASFGSFDKFKEEFTKTAIGTFGSGWAWLVKKSDGSLGLASTIGAGNPMTAGDKPLLTCDVWEH
AYYIDYRNARPKFVEAFWNLVNWDFVAKNFAG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=192, Percent_Identity=44.7916666666667, Blast_Score=169, Evalue=2e-42,
Organism=Homo sapiens, GI67782305, Length=192, Percent_Identity=44.7916666666667, Blast_Score=169, Evalue=2e-42,
Organism=Homo sapiens, GI67782309, Length=190, Percent_Identity=40, Blast_Score=133, Evalue=8e-32,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=70.4663212435233, Blast_Score=293, Evalue=4e-81,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=41.5458937198068, Blast_Score=153, Evalue=8e-39,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=38.3838383838384, Blast_Score=142, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI17569479, Length=191, Percent_Identity=39.2670157068063, Blast_Score=137, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=33.8164251207729, Blast_Score=114, Evalue=1e-26,
Organism=Drosophila melanogaster, GI17136812, Length=193, Percent_Identity=41.9689119170984, Blast_Score=145, Evalue=1e-35,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21267; Mature: 21136

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPPLPYEKNALEPHMSAETLDYHHDKHHAAYVTNLNNLIPGTEFEGKDLESIIKTS
CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECHHHCCCCCCCCCCHHHHHHHHC
SGGIFNNAAQVWNHTFFWNCLAPNAGGQPTGALADAINASFGSFDKFKEEFTKTAIGTFG
CCCCCCHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKSDGSLGLASTIGAGNPMTAGDKPLLTCDVWEHAYYIDYRNARPKFVEAFWN
CCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHH
LVNWDFVAKNFAG
HHHHHHHHHCCCC
>Mature Secondary Structure 
AFELPPLPYEKNALEPHMSAETLDYHHDKHHAAYVTNLNNLIPGTEFEGKDLESIIKTS
CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECHHHCCCCCCCCCCHHHHHHHHC
SGGIFNNAAQVWNHTFFWNCLAPNAGGQPTGALADAINASFGSFDKFKEEFTKTAIGTFG
CCCCCCHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKSDGSLGLASTIGAGNPMTAGDKPLLTCDVWEHAYYIDYRNARPKFVEAFWN
CCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHH
LVNWDFVAKNFAG
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]