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The map label for this gene is yddU [C]

Identifier: 146283460

GI number: 146283460

Start: 3371698

End: 3373680

Strand: Direct

Name: yddU [C]

Synonym: PST_3133

Alternate gene names: 146283460

Gene position: 3371698-3373680 (Clockwise)

Preceding gene: 146283459

Following gene: 146283461

Centisome position: 73.82

GC content: 63.89

Gene sequence:

>1983_bases
GTGCTCAGCTGCGCGCAGATCATCTTCGGCGCCTACAAGACGCGCCAGCTGATCGAGGCCGATGCCCAGCGCATCCTGCG
CATGACGCGCGATCCTTCCACCCAGGCCATCTACAGCCTGGATCGGGAAATGGGTGCACAGGTGATGGAAGGCCTGTTCC
AGCACGAATCGATTCGCATGGCCTCGATCGGCCACCCGGACGAAGGCATGCTGGCACTGAAGATCCGCCCGCCCATCAGC
CTGCCGACCCGCTGGCTGACCGACCCGATCCTTCACGAGGATCGCCAGTTTTCCATTCCTCTGATCGGCAAGCCGCCCTA
CAACGAGTATTACGGCGAACTGCGGATCACCCTGGACACGGCCCAGTACGGCCAGGAATTCGTCAACGACTCCATCGTCA
TCTTCATCGTCGGCATTCTGCGCGCCCTCACCCTGGGGCTGGTGCTCTTCCTGATCTACCAGTGGCTGCTGACCCGCCCG
CTGACCAAGCTCATCGAGCACCTGGCACAGATCAATCCGGACCGCCCCGGCGAGCACAAACTGCCGATGATCCGAGGGCA
TGAGCGCAACGAGCTGGGCCTATGGGTGGAAACCGCCAACGGCCTGCTGGCCTCCATCGAACACAACATGCACCTGCGCC
AGGAAGCCGAGAGCAGCCTGCATCGCATGACCCAGTACGACTCCCTGACCGGCCTGCCCAACCGGCAGCAGCTGCAAAGC
CAGCTGGACCATATCCTCGACGAGGCGCGCCGCCTGCAACGACGGGTCGCCGTACTCTGCCTGGGGCTCGACGACTTCAA
GGGCATCAACGAGCAGTACAGCTACCAGGCGGGCGACTGTCTGCTCAAGGGGTTGGCGGATCGCCTGCGCGAATCGGCGG
GTCGCCTGGGTGCACTGGCGCGGCTGGGCGGTGACCAGTTCGTGCTGGTGCTCAGCGGCATCGAACAACCCTATGAGGCT
GCCGAACTGGCCCAGGCCGTGCTCGACGACCTGGATAATCCGATCGACCTGGACGGCCACCCGATTCGTCTGCGCGCCAC
CATCGGCATCACGCTGTACCCCGAGGATGGCGACAACACCGAGAAGCTGCTGCAAAAGGCCGAGCAGACCATGACGCTGG
CCAAGAGCCGCTCACGCAACCGCTATCAGTTCTACGTCGCCAGCATCGACAGCCAGATGCGCGCGCGGCGGGAGCTGGAG
AAGGATCTCAGCGAAGCCCTCAAGCGCAACGAGTTCCACCTGGTCTACCAGCCGCAGGTCGACTACCGGCAGAACCGCAT
CACCGGAGTCGAGGCGCTGATTCGCTGGAAGCATCCGCAAGGCAAGCTGGTACCGCCGGACCTGTTCATACCTCTGGCCG
AGCAGAACGGCAGCATCATCGAAATCGGCAAGTGGGTGCTCGACCAGGCCTGCAGCCAGCTGCGCCAGTGGCACGCACAG
GGCCATACCGGACTGCGTGTGGCGGTGAACCTGTCCACCGTGCAGCTGCGTCATCCGCAGCTGCCAGCCATGATCGGCGA
GCTGCTGCAGGCCCATCAGTTGCCCGCCGAGACCCTCGAACTGGAGGTCACCGAGACCGGCCTGATGGAAGATATCGACG
CGGCGGCGCACAACCTGCACAGCCTGCGACGCTCCGGCGCGCTGATCGCCATCGACGACTTCGGCACCGGCTATTCCTCG
CTGAGCTATCTGAAAAGCCTGCCACTGGACAAGATCAAGATCGACAAGAGCTTCGTGCAGGACATCGGTCAGGACGAGGG
CGCAACCATCGTCCGGGCGATCATCCAGCTGGGCAAGAGCCTCGGCATGACCGTGATCGCGGAAGGCGTCGAAACTCCTG
AGCAGGAAGCCTACCTGATCGCCGAAGGCTGCCAGGAAGGCCAGGGCTACTATTACAGCAAGCCCCTGCCGGCGCGGGAT
CTCGACCTGCTGCTGCGCCAGTCGGCGCCCTTCGATCGAGCGGGCAACTCCGAGCTGCGCTAG

Upstream 100 bases:

>100_bases
CCGCACGGAAAAGGACCTTCATTTGAAGCTGGAAATGCGCAATAGCCTGTCACGGAAGCTCCTGCGTGTAGTCCTGCTAT
CGGCGCTGGCGGTAGGGCTG

Downstream 100 bases:

>100_bases
TCGCGCGGCCACTTTGGCATGCAGCGCCCAAGCGCTGGCCAGCGCCAGCGACTTGCGCCACACTCGGCGCCCTTCTGGCC
CATCGCGGCCGACGACGAGC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 660; Mature: 660

Protein sequence:

>660_residues
MLSCAQIIFGAYKTRQLIEADAQRILRMTRDPSTQAIYSLDREMGAQVMEGLFQHESIRMASIGHPDEGMLALKIRPPIS
LPTRWLTDPILHEDRQFSIPLIGKPPYNEYYGELRITLDTAQYGQEFVNDSIVIFIVGILRALTLGLVLFLIYQWLLTRP
LTKLIEHLAQINPDRPGEHKLPMIRGHERNELGLWVETANGLLASIEHNMHLRQEAESSLHRMTQYDSLTGLPNRQQLQS
QLDHILDEARRLQRRVAVLCLGLDDFKGINEQYSYQAGDCLLKGLADRLRESAGRLGALARLGGDQFVLVLSGIEQPYEA
AELAQAVLDDLDNPIDLDGHPIRLRATIGITLYPEDGDNTEKLLQKAEQTMTLAKSRSRNRYQFYVASIDSQMRARRELE
KDLSEALKRNEFHLVYQPQVDYRQNRITGVEALIRWKHPQGKLVPPDLFIPLAEQNGSIIEIGKWVLDQACSQLRQWHAQ
GHTGLRVAVNLSTVQLRHPQLPAMIGELLQAHQLPAETLELEVTETGLMEDIDAAAHNLHSLRRSGALIAIDDFGTGYSS
LSYLKSLPLDKIKIDKSFVQDIGQDEGATIVRAIIQLGKSLGMTVIAEGVETPEQEAYLIAEGCQEGQGYYYSKPLPARD
LDLLLRQSAPFDRAGNSELR

Sequences:

>Translated_660_residues
MLSCAQIIFGAYKTRQLIEADAQRILRMTRDPSTQAIYSLDREMGAQVMEGLFQHESIRMASIGHPDEGMLALKIRPPIS
LPTRWLTDPILHEDRQFSIPLIGKPPYNEYYGELRITLDTAQYGQEFVNDSIVIFIVGILRALTLGLVLFLIYQWLLTRP
LTKLIEHLAQINPDRPGEHKLPMIRGHERNELGLWVETANGLLASIEHNMHLRQEAESSLHRMTQYDSLTGLPNRQQLQS
QLDHILDEARRLQRRVAVLCLGLDDFKGINEQYSYQAGDCLLKGLADRLRESAGRLGALARLGGDQFVLVLSGIEQPYEA
AELAQAVLDDLDNPIDLDGHPIRLRATIGITLYPEDGDNTEKLLQKAEQTMTLAKSRSRNRYQFYVASIDSQMRARRELE
KDLSEALKRNEFHLVYQPQVDYRQNRITGVEALIRWKHPQGKLVPPDLFIPLAEQNGSIIEIGKWVLDQACSQLRQWHAQ
GHTGLRVAVNLSTVQLRHPQLPAMIGELLQAHQLPAETLELEVTETGLMEDIDAAAHNLHSLRRSGALIAIDDFGTGYSS
LSYLKSLPLDKIKIDKSFVQDIGQDEGATIVRAIIQLGKSLGMTVIAEGVETPEQEAYLIAEGCQEGQGYYYSKPLPARD
LDLLLRQSAPFDRAGNSELR
>Mature_660_residues
MLSCAQIIFGAYKTRQLIEADAQRILRMTRDPSTQAIYSLDREMGAQVMEGLFQHESIRMASIGHPDEGMLALKIRPPIS
LPTRWLTDPILHEDRQFSIPLIGKPPYNEYYGELRITLDTAQYGQEFVNDSIVIFIVGILRALTLGLVLFLIYQWLLTRP
LTKLIEHLAQINPDRPGEHKLPMIRGHERNELGLWVETANGLLASIEHNMHLRQEAESSLHRMTQYDSLTGLPNRQQLQS
QLDHILDEARRLQRRVAVLCLGLDDFKGINEQYSYQAGDCLLKGLADRLRESAGRLGALARLGGDQFVLVLSGIEQPYEA
AELAQAVLDDLDNPIDLDGHPIRLRATIGITLYPEDGDNTEKLLQKAEQTMTLAKSRSRNRYQFYVASIDSQMRARRELE
KDLSEALKRNEFHLVYQPQVDYRQNRITGVEALIRWKHPQGKLVPPDLFIPLAEQNGSIIEIGKWVLDQACSQLRQWHAQ
GHTGLRVAVNLSTVQLRHPQLPAMIGELLQAHQLPAETLELEVTETGLMEDIDAAAHNLHSLRRSGALIAIDDFGTGYSS
LSYLKSLPLDKIKIDKSFVQDIGQDEGATIVRAIIQLGKSLGMTVIAEGVETPEQEAYLIAEGCQEGQGYYYSKPLPARD
LDLLLRQSAPFDRAGNSELR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=444, Percent_Identity=36.036036036036, Blast_Score=264, Evalue=2e-71,
Organism=Escherichia coli, GI1787541, Length=426, Percent_Identity=33.8028169014084, Blast_Score=258, Evalue=1e-69,
Organism=Escherichia coli, GI226510982, Length=504, Percent_Identity=30.952380952381, Blast_Score=226, Evalue=3e-60,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=37.6569037656904, Blast_Score=160, Evalue=3e-40,
Organism=Escherichia coli, GI1788502, Length=269, Percent_Identity=36.0594795539033, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI87081980, Length=266, Percent_Identity=37.9699248120301, Blast_Score=156, Evalue=4e-39,
Organism=Escherichia coli, GI87081845, Length=246, Percent_Identity=36.9918699186992, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1787055, Length=534, Percent_Identity=26.4044943820225, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=37.037037037037, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=35.4166666666667, Blast_Score=142, Evalue=9e-35,
Organism=Escherichia coli, GI1788849, Length=259, Percent_Identity=32.8185328185328, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI87082096, Length=420, Percent_Identity=28.8095238095238, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1788956, Length=282, Percent_Identity=28.0141843971631, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788381, Length=413, Percent_Identity=25.181598062954, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=27.6470588235294, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1787410, Length=224, Percent_Identity=27.2321428571429, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87082007, Length=176, Percent_Identity=32.3863636363636, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=27.8787878787879, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081977, Length=97, Percent_Identity=35.0515463917526, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081881, Length=190, Percent_Identity=28.9473684210526, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=28.6585365853659, Blast_Score=62, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 74381; Mature: 74381

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSCAQIIFGAYKTRQLIEADAQRILRMTRDPSTQAIYSLDREMGAQVMEGLFQHESIRM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEE
ASIGHPDEGMLALKIRPPISLPTRWLTDPILHEDRQFSIPLIGKPPYNEYYGELRITLDT
EECCCCCCCEEEEEECCCCCCCHHHCCCHHHCCCCCCCCEECCCCCCCCCCCEEEEEEEH
AQYGQEFVNDSIVIFIVGILRALTLGLVLFLIYQWLLTRPLTKLIEHLAQINPDRPGEHK
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
LPMIRGHERNELGLWVETANGLLASIEHNMHLRQEAESSLHRMTQYDSLTGLPNRQQLQS
CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QLDHILDEARRLQRRVAVLCLGLDDFKGINEQYSYQAGDCLLKGLADRLRESAGRLGALA
HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLGGDQFVLVLSGIEQPYEAAELAQAVLDDLDNPIDLDGHPIRLRATIGITLYPEDGDNT
HCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCH
EKLLQKAEQTMTLAKSRSRNRYQFYVASIDSQMRARRELEKDLSEALKRNEFHLVYQPQV
HHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
DYRQNRITGVEALIRWKHPQGKLVPPDLFIPLAEQNGSIIEIGKWVLDQACSQLRQWHAQ
CHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHC
GHTGLRVAVNLSTVQLRHPQLPAMIGELLQAHQLPAETLELEVTETGLMEDIDAAAHNLH
CCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHEEEEEHHHCHHHHHHHHHHHHH
SLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDIGQDEGATIVRAIIQLGKS
HHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEECCHHHHHHCCCCCCHHHHHHHHHHHHH
LGMTVIAEGVETPEQEAYLIAEGCQEGQGYYYSKPLPARDLDLLLRQSAPFDRAGNSELR
CCHHHHHCCCCCCCHHHEEEECCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLSCAQIIFGAYKTRQLIEADAQRILRMTRDPSTQAIYSLDREMGAQVMEGLFQHESIRM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEE
ASIGHPDEGMLALKIRPPISLPTRWLTDPILHEDRQFSIPLIGKPPYNEYYGELRITLDT
EECCCCCCCEEEEEECCCCCCCHHHCCCHHHCCCCCCCCEECCCCCCCCCCCEEEEEEEH
AQYGQEFVNDSIVIFIVGILRALTLGLVLFLIYQWLLTRPLTKLIEHLAQINPDRPGEHK
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
LPMIRGHERNELGLWVETANGLLASIEHNMHLRQEAESSLHRMTQYDSLTGLPNRQQLQS
CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QLDHILDEARRLQRRVAVLCLGLDDFKGINEQYSYQAGDCLLKGLADRLRESAGRLGALA
HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLGGDQFVLVLSGIEQPYEAAELAQAVLDDLDNPIDLDGHPIRLRATIGITLYPEDGDNT
HCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCH
EKLLQKAEQTMTLAKSRSRNRYQFYVASIDSQMRARRELEKDLSEALKRNEFHLVYQPQV
HHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
DYRQNRITGVEALIRWKHPQGKLVPPDLFIPLAEQNGSIIEIGKWVLDQACSQLRQWHAQ
CHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHC
GHTGLRVAVNLSTVQLRHPQLPAMIGELLQAHQLPAETLELEVTETGLMEDIDAAAHNLH
CCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHEEEEEHHHCHHHHHHHHHHHHH
SLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDIGQDEGATIVRAIIQLGKS
HHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEECCHHHHHHCCCCCCHHHHHHHHHHHHH
LGMTVIAEGVETPEQEAYLIAEGCQEGQGYYYSKPLPARDLDLLLRQSAPFDRAGNSELR
CCHHHHHCCCCCCCHHHEEEECCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]