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The map label for this gene is kaiC [H]

Identifier: 146283220

GI number: 146283220

Start: 3105106

End: 3106632

Strand: Direct

Name: kaiC [H]

Synonym: PST_2885

Alternate gene names: 146283220

Gene position: 3105106-3106632 (Clockwise)

Preceding gene: 146283217

Following gene: 146283221

Centisome position: 67.98

GC content: 63.98

Gene sequence:

>1527_bases
ATGACCGATACCCACGATCTTGATCTCCCCATGGATGACGAAGCCCAGCGTATTTCGACGGGCAGCGAAGGCCTGGACAA
CATCCTCGGCGGCGGCCTGGACCCCAACCGCATGTATCTCTACGAGGGCAGTCCGGGCTCGGGCAAGACCACCATCGCGC
TGCAGTTCCTGCTCGAGGGCGTGCGCAGGGGCGAGCGCGTGCTCTACGTGACGCTGTCGGAAACCAAGGCAGAGCTGGAG
CTGGTGGCCAAGCGGCACGGCTGGAGCCTGGATGGCATTGATGTGTTCGAACTGGTCAGCCCGGAAACCAGCCTCGATCC
GGAGCTGGAGCTGACCGTGCTGCACCCGGCGGAAATGGAGCTCAGCGAAACCACCCAGCAGGTGTTCGACCGCGTCAGCG
AAACCAACCCGACACGGGTGATCTTCGACAGCCTTTCGGAAATGCGACTGCTGGCCCAAAGCCCGCTGCGCTATCGCCGG
CAGGTGCTGGCACTCAAGCACTTCTTCACCACCCGCCGCTGCACGGTGATCCTGCTCGATGACCAGACCTCGGAAATGGG
CGACCTGCAGCTGCACTCGATTTCCCATGGGGTCGTCCTGCTGGAGCAGCTGGCCATCGACTATGGCGCCGAACGCAGGC
GTCTGCGGGTCATCAAGATGCGCGGCATCCAGTTCCGCGGTGGCTACCACGACTTCGTCATCCGCAAGGGCGGGCTGCAG
ATCTATCCGCGCCTGATCGCGGCCGAGCATCGCTCCTGCTTTGTCGGCGAGGTGGCCTCCTCCGGCAACGAGATGCTGGA
CCGGATGCTCGGTGGCGGGCTGGAACGCGGCACCAACGCGCTGCTGGTCGGCGCGGCCGGGGTCGGCAAGTCCTCGCTGG
CGCTGACCTATGCGTACGCCGCCTGCCAACGCGGCGAGCAGGTGGCCTTCTTCGTTTTCGACGAGAACATCGGCACCCTG
CTGACCCGCGGCCGCGCACTGGGAATGGATATCGAACCGTGGATCGAACGAGGCCTGCTGCACCTGCAACAGGTCGACCC
GGCCGAACTGTCGCCCGGCGAGTTCACCGCCGCGGTGCGCCACAGCGTCGAAATGCAAGGCGCCGGGCTGGTGGTGCTCG
ATAGCCTCAACGGCTACCTGCACGCCATGCCGGACGGCAAGTTCCTGGTCCTGCAGATGCACGAGCTGCTGAGTTACCTG
GGGCAGAAAGGGGTGGTCACCATCATGGTATTGGCCCAGCATGGGCTGGTTGGCGTAATGGATACCCCAATCGACATCAG
CTACCTGAGCGATGCCGTCATCATGCAGCGCTATTTCGAGCATGCCGGCATCATCCGCCGGGCCCTGTCGGTGGTGAAGA
AGCGCAGCGGGCGCCACGAGAACACCATCCGCGAATACCGCTTCAGTCCCACCGGCATCCAGGTCGGGCCGCCCCTGAGT
CACTTCAACGGCATCCTTTCGGGCACACCGGAATACACCGGCGATGCGGCTCAGCTACTGAAAGACGAGCATGACGACAC
CTACTAA

Upstream 100 bases:

>100_bases
CTTTGACGGGCGCGTTCCATTGCCTCGCGGCGCTCGAAGCGCGAGGTCAGGAACCAGGACACGCAGTCTCCATGAGGCTG
CCTGCGTAAGGAGCATGGAA

Downstream 100 bases:

>100_bases
ACGTGACAGCCCCACCGTAGTCGTCTTTGCCCCCATCGGTCGGGACGGCCCCGCCTCGGCCGAGCTGCTCAACCGCAGCG
GCATGGAAGCCGTGGTCTGC

Product: circadian oscillation regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 507

Protein sequence:

>508_residues
MTDTHDLDLPMDDEAQRISTGSEGLDNILGGGLDPNRMYLYEGSPGSGKTTIALQFLLEGVRRGERVLYVTLSETKAELE
LVAKRHGWSLDGIDVFELVSPETSLDPELELTVLHPAEMELSETTQQVFDRVSETNPTRVIFDSLSEMRLLAQSPLRYRR
QVLALKHFFTTRRCTVILLDDQTSEMGDLQLHSISHGVVLLEQLAIDYGAERRRLRVIKMRGIQFRGGYHDFVIRKGGLQ
IYPRLIAAEHRSCFVGEVASSGNEMLDRMLGGGLERGTNALLVGAAGVGKSSLALTYAYAACQRGEQVAFFVFDENIGTL
LTRGRALGMDIEPWIERGLLHLQQVDPAELSPGEFTAAVRHSVEMQGAGLVVLDSLNGYLHAMPDGKFLVLQMHELLSYL
GQKGVVTIMVLAQHGLVGVMDTPIDISYLSDAVIMQRYFEHAGIIRRALSVVKKRSGRHENTIREYRFSPTGIQVGPPLS
HFNGILSGTPEYTGDAAQLLKDEHDDTY

Sequences:

>Translated_508_residues
MTDTHDLDLPMDDEAQRISTGSEGLDNILGGGLDPNRMYLYEGSPGSGKTTIALQFLLEGVRRGERVLYVTLSETKAELE
LVAKRHGWSLDGIDVFELVSPETSLDPELELTVLHPAEMELSETTQQVFDRVSETNPTRVIFDSLSEMRLLAQSPLRYRR
QVLALKHFFTTRRCTVILLDDQTSEMGDLQLHSISHGVVLLEQLAIDYGAERRRLRVIKMRGIQFRGGYHDFVIRKGGLQ
IYPRLIAAEHRSCFVGEVASSGNEMLDRMLGGGLERGTNALLVGAAGVGKSSLALTYAYAACQRGEQVAFFVFDENIGTL
LTRGRALGMDIEPWIERGLLHLQQVDPAELSPGEFTAAVRHSVEMQGAGLVVLDSLNGYLHAMPDGKFLVLQMHELLSYL
GQKGVVTIMVLAQHGLVGVMDTPIDISYLSDAVIMQRYFEHAGIIRRALSVVKKRSGRHENTIREYRFSPTGIQVGPPLS
HFNGILSGTPEYTGDAAQLLKDEHDDTY
>Mature_507_residues
TDTHDLDLPMDDEAQRISTGSEGLDNILGGGLDPNRMYLYEGSPGSGKTTIALQFLLEGVRRGERVLYVTLSETKAELEL
VAKRHGWSLDGIDVFELVSPETSLDPELELTVLHPAEMELSETTQQVFDRVSETNPTRVIFDSLSEMRLLAQSPLRYRRQ
VLALKHFFTTRRCTVILLDDQTSEMGDLQLHSISHGVVLLEQLAIDYGAERRRLRVIKMRGIQFRGGYHDFVIRKGGLQI
YPRLIAAEHRSCFVGEVASSGNEMLDRMLGGGLERGTNALLVGAAGVGKSSLALTYAYAACQRGEQVAFFVFDENIGTLL
TRGRALGMDIEPWIERGLLHLQQVDPAELSPGEFTAAVRHSVEMQGAGLVVLDSLNGYLHAMPDGKFLVLQMHELLSYLG
QKGVVTIMVLAQHGLVGVMDTPIDISYLSDAVIMQRYFEHAGIIRRALSVVKKRSGRHENTIREYRFSPTGIQVGPPLSH
FNGILSGTPEYTGDAAQLLKDEHDDTY

Specific function: Core component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by actin

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 56309; Mature: 56178

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS51146 KAIC ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTHDLDLPMDDEAQRISTGSEGLDNILGGGLDPNRMYLYEGSPGSGKTTIALQFLLEG
CCCCCCCCCCCCCCHHHHCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
VRRGERVLYVTLSETKAELELVAKRHGWSLDGIDVFELVSPETSLDPELELTVLHPAEME
HCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCH
LSETTQQVFDRVSETNPTRVIFDSLSEMRLLAQSPLRYRRQVLALKHFFTTRRCTVILLD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEEE
DQTSEMGDLQLHSISHGVVLLEQLAIDYGAERRRLRVIKMRGIQFRGGYHDFVIRKGGLQ
CCCCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHEEEEEECCEEECCCCEEEEEECCCCE
IYPRLIAAEHRSCFVGEVASSGNEMLDRMLGGGLERGTNALLVGAAGVGKSSLALTYAYA
EHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
ACQRGEQVAFFVFDENIGTLLTRGRALGMDIEPWIERGLLHLQQVDPAELSPGEFTAAVR
HHCCCCEEEEEEEECCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
HSVEMQGAGLVVLDSLNGYLHAMPDGKFLVLQMHELLSYLGQKGVVTIMVLAQHGLVGVM
HHHEECCCCEEEEECCCCEEEECCCCCEEEEEHHHHHHHHCCCCCEEEEEEECCCCEEEE
DTPIDISYLSDAVIMQRYFEHAGIIRRALSVVKKRSGRHENTIREYRFSPTGIQVGPPLS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCHH
HFNGILSGTPEYTGDAAQLLKDEHDDTY
HHCCCCCCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
TDTHDLDLPMDDEAQRISTGSEGLDNILGGGLDPNRMYLYEGSPGSGKTTIALQFLLEG
CCCCCCCCCCCCCHHHHCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
VRRGERVLYVTLSETKAELELVAKRHGWSLDGIDVFELVSPETSLDPELELTVLHPAEME
HCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCH
LSETTQQVFDRVSETNPTRVIFDSLSEMRLLAQSPLRYRRQVLALKHFFTTRRCTVILLD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEEE
DQTSEMGDLQLHSISHGVVLLEQLAIDYGAERRRLRVIKMRGIQFRGGYHDFVIRKGGLQ
CCCCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHEEEEEECCEEECCCCEEEEEECCCCE
IYPRLIAAEHRSCFVGEVASSGNEMLDRMLGGGLERGTNALLVGAAGVGKSSLALTYAYA
EHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
ACQRGEQVAFFVFDENIGTLLTRGRALGMDIEPWIERGLLHLQQVDPAELSPGEFTAAVR
HHCCCCEEEEEEEECCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
HSVEMQGAGLVVLDSLNGYLHAMPDGKFLVLQMHELLSYLGQKGVVTIMVLAQHGLVGVM
HHHEECCCCEEEEECCCCEEEECCCCCEEEEEHHHHHHHHCCCCCEEEEEEECCCCEEEE
DTPIDISYLSDAVIMQRYFEHAGIIRRALSVVKKRSGRHENTIREYRFSPTGIQVGPPLS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCHH
HFNGILSGTPEYTGDAAQLLKDEHDDTY
HHCCCCCCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12477935 [H]