BacMap

Definition	Pseudomonas stutzeri A1501, complete genome.
Accession	NC_009434
Length	4,567,418

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The map label for this gene is yahD [C]

Identifier: 146283182

GI number: 146283182

Start: 3064626

End: 3065156

Strand: Direct

Name: yahD [C]

Synonym: PST_2847

Alternate gene names: 146283182

Gene position: 3064626-3065156 (Clockwise)

Preceding gene: 146283180

Following gene: 146283184

Centisome position: 67.1

GC content: 67.8

Gene sequence:

>531_bases
ATGCAAGCGCAAACAAGACCCGCAGAACTGGATGACGCCACGCTGGCGTTCGCCGAGCATGTGTTTCATGCCGCACGCAT
CGGTGACAGCGTCAGGCTCGGTCACCTGCTCAGCCAGGGCATGCCGGCGGACCTGCGCAATCATGCCGGCGACAGCCTGC
TGATGCTGGCCAGCTACCATGGCCGCCTCGCCGCCACCAGCGTACTGCTCGACCACGGCGCCGATGCGCAATTGGCTAAC
CGCCGCGGCCATACGCCGCTGGCGGGCGCCGCGTTCAAGGGTGACCTGCCGATGGTCAGGCTGCTCGTCGAGCGAGGCAC
CGATGTCGAAAGCCCCTGCGCAGACGGCAAGACCGCACTGATGATGGCCGCCATGTTCAATCACACCGCGATCGTCGAGT
GGCTGGTGGCGCAGGGCGCCGACCCGCATGCGACCGATGCCGGAGGCACCACGCCTCTGGCGGCGGCGCGCATGATGGGT
GCGAGCGAGACAGTGGCGCTGCTGCAGCGCATCGCCGCCGCTCAAGCCTGA

Upstream 100 bases:

>100_bases
CTCTATCCGAGGCATAGAAAGGCTTGCCTGGAGCGCCCTGGACGGCGTGCAGACAATGGCTGCCAACACGGCGCCCGCCG
ATCTTGCCTGGAGGAATGCG

Downstream 100 bases:

>100_bases
TGCGCCGTCAGCCGCGACCGATGGGGGCGAACGCTGCGCTCGTGTGCTCGGCCAGCACTGCCGGTGCCAGCTCCACTTCC
AGCCCGCGACGGCCAGCGCT

Product: ankyrin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MQAQTRPAELDDATLAFAEHVFHAARIGDSVRLGHLLSQGMPADLRNHAGDSLLMLASYHGRLAATSVLLDHGADAQLAN
RRGHTPLAGAAFKGDLPMVRLLVERGTDVESPCADGKTALMMAAMFNHTAIVEWLVAQGADPHATDAGGTTPLAAARMMG
ASETVALLQRIAAAQA

Sequences:

>Translated_176_residues
MQAQTRPAELDDATLAFAEHVFHAARIGDSVRLGHLLSQGMPADLRNHAGDSLLMLASYHGRLAATSVLLDHGADAQLAN
RRGHTPLAGAAFKGDLPMVRLLVERGTDVESPCADGKTALMMAAMFNHTAIVEWLVAQGADPHATDAGGTTPLAAARMMG
ASETVALLQRIAAAQA
>Mature_176_residues
MQAQTRPAELDDATLAFAEHVFHAARIGDSVRLGHLLSQGMPADLRNHAGDSLLMLASYHGRLAATSVLLDHGADAQLAN
RRGHTPLAGAAFKGDLPMVRLLVERGTDVESPCADGKTALMMAAMFNHTAIVEWLVAQGADPHATDAGGTTPLAAARMMG
ASETVALLQRIAAAQA

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI52426735, Length=146, Percent_Identity=32.8767123287671, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI52426737, Length=167, Percent_Identity=31.1377245508982, Blast_Score=77, Evalue=6e-15,
Organism=Homo sapiens, GI188595682, Length=134, Percent_Identity=34.3283582089552, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI225543463, Length=133, Percent_Identity=36.0902255639098, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI268607595, Length=140, Percent_Identity=30.7142857142857, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI225543461, Length=133, Percent_Identity=36.0902255639098, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI70780355, Length=148, Percent_Identity=32.4324324324324, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI215598574, Length=148, Percent_Identity=32.4324324324324, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI70780359, Length=148, Percent_Identity=32.4324324324324, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI62988328, Length=140, Percent_Identity=30.7142857142857, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI70780353, Length=148, Percent_Identity=32.4324324324324, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI70780357, Length=148, Percent_Identity=32.4324324324324, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI32967601, Length=147, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI157739945, Length=150, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI24233530, Length=139, Percent_Identity=35.2517985611511, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI110431370, Length=140, Percent_Identity=38.5714285714286, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI70995267, Length=153, Percent_Identity=35.9477124183007, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI148596917, Length=153, Percent_Identity=30.0653594771242, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI89363047, Length=150, Percent_Identity=30, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI67906195, Length=140, Percent_Identity=37.8571428571429, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI30425444, Length=140, Percent_Identity=35, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI47933346, Length=152, Percent_Identity=30.2631578947368, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI116875852, Length=145, Percent_Identity=31.7241379310345, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI267844887, Length=126, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=6e-11,
Organism=Homo sapiens, GI18252778, Length=106, Percent_Identity=34.9056603773585, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI55742857, Length=125, Percent_Identity=36, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI140161500, Length=122, Percent_Identity=36.0655737704918, Blast_Score=64, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI71981411, Length=147, Percent_Identity=35.3741496598639, Blast_Score=76, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71981414, Length=147, Percent_Identity=35.3741496598639, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI25145251, Length=147, Percent_Identity=35.3741496598639, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71981389, Length=147, Percent_Identity=35.3741496598639, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17542700, Length=147, Percent_Identity=35.3741496598639, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI212645948, Length=112, Percent_Identity=36.6071428571429, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17540144, Length=154, Percent_Identity=33.1168831168831, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI212645194, Length=137, Percent_Identity=33.5766423357664, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI161082096, Length=147, Percent_Identity=35.3741496598639, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI161082106, Length=147, Percent_Identity=35.3741496598639, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI161082081, Length=147, Percent_Identity=35.3741496598639, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI161082110, Length=147, Percent_Identity=35.3741496598639, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI161082085, Length=147, Percent_Identity=35.3741496598639, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI161082099, Length=147, Percent_Identity=35.3741496598639, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI161082089, Length=145, Percent_Identity=35.8620689655172, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI161082092, Length=145, Percent_Identity=35.8620689655172, Blast_Score=73, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24581260, Length=146, Percent_Identity=34.9315068493151, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24581258, Length=146, Percent_Identity=34.9315068493151, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI281359521, Length=139, Percent_Identity=31.6546762589928, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI281359519, Length=139, Percent_Identity=31.6546762589928, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI28558752, Length=139, Percent_Identity=31.6546762589928, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI28558750, Length=139, Percent_Identity=31.6546762589928, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI28558756, Length=139, Percent_Identity=31.6546762589928, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI28558754, Length=139, Percent_Identity=31.6546762589928, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17998549, Length=133, Percent_Identity=36.8421052631579, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45552223, Length=133, Percent_Identity=36.8421052631579, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221472807, Length=133, Percent_Identity=36.8421052631579, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24663102, Length=147, Percent_Identity=38.0952380952381, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24663106, Length=147, Percent_Identity=38.0952380952381, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24663095, Length=147, Percent_Identity=38.0952380952381, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21357681, Length=147, Percent_Identity=38.0952380952381, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24663091, Length=147, Percent_Identity=38.0952380952381, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24650843, Length=133, Percent_Identity=30.0751879699248, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683 [H]

Pfam domain/function: PF00023 Ank [H]

EC number: NA

Molecular weight: Translated: 18381; Mature: 18381

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAQTRPAELDDATLAFAEHVFHAARIGDSVRLGHLLSQGMPADLRNHAGDSLLMLASYH
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHCCCCCEEEEEHHC
GRLAATSVLLDHGADAQLANRRGHTPLAGAAFKGDLPMVRLLVERGTDVESPCADGKTAL
CHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHH
MMAAMFNHTAIVEWLVAQGADPHATDAGGTTPLAAARMMGASETVALLQRIAAAQA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQAQTRPAELDDATLAFAEHVFHAARIGDSVRLGHLLSQGMPADLRNHAGDSLLMLASYH
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHCCCCCEEEEEHHC
GRLAATSVLLDHGADAQLANRRGHTPLAGAAFKGDLPMVRLLVERGTDVESPCADGKTAL
CHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHH
MMAAMFNHTAIVEWLVAQGADPHATDAGGTTPLAAARMMGASETVALLQRIAAAQA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]