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The map label for this gene is ycdC [C]

Identifier: 146283077

GI number: 146283077

Start: 2964772

End: 2965407

Strand: Direct

Name: ycdC [C]

Synonym: PST_2737

Alternate gene names: 146283077

Gene position: 2964772-2965407 (Clockwise)

Preceding gene: 146283074

Following gene: 146283085

Centisome position: 64.91

GC content: 63.36

Gene sequence:

>636_bases
ATGATAGAGAATCATTCACCCTCGCCCGGCCCCGGCCGCCCGAAGGACCCTGCCAAGCGCGAGGCGATCCTTGCTGCGGC
GCAGGTCTTGTTCCTCGGCAACGGCTACGAAGGCAGCAGCATGGAGGCCATCGCCAGCGAAGCCGGTGTCTCCAAGCTCA
CGCTGTACAGTCATTTCAAGGACAAGGAAGCGCTGTTCTGCGCCGCGGTGAAAGCCACCTGCGAAACGCGACTGCCGAGG
CGCCTGTTTCAGGTGGAGGCCGATTGCGACATCGAGAAGCTGCTGCTGGAGATCGGTCGTGCCTTCCATGAGCTGGTCAA
CAGCCCAGAATCCATTGGCCTGCATCGGGTGATGGTGGCGATGGCGACGCAGAACGCAGGCCTGGTGAAGATGTTCTTCG
ACGCCGGTCCGCAGCAGCTGCTATTGGATTTGCAGCAGCTGTTCGGCCAGGCCGACAGCCTGGGCCTGCTGCGCATCGAC
GACCCGCTGCGCGCCGCCGAACACTACTGTTCGCTGATCAAGGGCGCGCAACATTTCCGCCTGCTGATCGGCTATGCCGA
GGCACCGAGCCAGGCGGAAAGCGATCAGCATGTGGCGGATGCGGTGGGCCTCTTTCTGCGCGCCTACCGCGGCTGA

Upstream 100 bases:

>100_bases
GAACACGATGAAGGTCTCTCTGTCGCGAAGCGGATTGGAATACTTATACTGCGCGGTATAGTAAAAATAGCGTACCAGCC
AGTCCAGTATTAAAACGCCC

Downstream 100 bases:

>100_bases
ATCCGGCGCTGCGTCATCTGCCCGCCGGGATCAGGCCTGCAGCTTCTTCTTCGGGTAGATGTCGTAGCGACTGGACTTGC
CTTCCAGACTGTAGCCGGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator Protein; Bacterial Regulatory Protein; TetR-Family Trancriptional Regulatory Protein; Transcriptional Regulator Protein TetR Family; TetR-Like Virulence Regulator; Regulatory Protein Tetr; Calsymin Transcriptional Regulator; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Type Transcriptional Regulator; Bacterial Regulatory Protein TetR Family Protein; Transcriptional Regulator TetR-Like; TetR Family Regulatory Protein; Transcriptional Regulator TetR; Transcriptional Regulator Protein Tetr Family

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MIENHSPSPGPGRPKDPAKREAILAAAQVLFLGNGYEGSSMEAIASEAGVSKLTLYSHFKDKEALFCAAVKATCETRLPR
RLFQVEADCDIEKLLLEIGRAFHELVNSPESIGLHRVMVAMATQNAGLVKMFFDAGPQQLLLDLQQLFGQADSLGLLRID
DPLRAAEHYCSLIKGAQHFRLLIGYAEAPSQAESDQHVADAVGLFLRAYRG

Sequences:

>Translated_211_residues
MIENHSPSPGPGRPKDPAKREAILAAAQVLFLGNGYEGSSMEAIASEAGVSKLTLYSHFKDKEALFCAAVKATCETRLPR
RLFQVEADCDIEKLLLEIGRAFHELVNSPESIGLHRVMVAMATQNAGLVKMFFDAGPQQLLLDLQQLFGQADSLGLLRID
DPLRAAEHYCSLIKGAQHFRLLIGYAEAPSQAESDQHVADAVGLFLRAYRG
>Mature_211_residues
MIENHSPSPGPGRPKDPAKREAILAAAQVLFLGNGYEGSSMEAIASEAGVSKLTLYSHFKDKEALFCAAVKATCETRLPR
RLFQVEADCDIEKLLLEIGRAFHELVNSPESIGLHRVMVAMATQNAGLVKMFFDAGPQQLLLDLQQLFGQADSLGLLRID
DPLRAAEHYCSLIKGAQHFRLLIGYAEAPSQAESDQHVADAVGLFLRAYRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23020; Mature: 23020

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENHSPSPGPGRPKDPAKREAILAAAQVLFLGNGYEGSSMEAIASEAGVSKLTLYSHFK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCC
DKEALFCAAVKATCETRLPRRLFQVEADCDIEKLLLEIGRAFHELVNSPESIGLHRVMVA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MATQNAGLVKMFFDAGPQQLLLDLQQLFGQADSLGLLRIDDPLRAAEHYCSLIKGAQHFR
HHCCCCCEEEHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHH
LLIGYAEAPSQAESDQHVADAVGLFLRAYRG
HHHEECCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIENHSPSPGPGRPKDPAKREAILAAAQVLFLGNGYEGSSMEAIASEAGVSKLTLYSHFK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCC
DKEALFCAAVKATCETRLPRRLFQVEADCDIEKLLLEIGRAFHELVNSPESIGLHRVMVA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MATQNAGLVKMFFDAGPQQLLLDLQQLFGQADSLGLLRIDDPLRAAEHYCSLIKGAQHFR
HHCCCCCEEEHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHH
LLIGYAEAPSQAESDQHVADAVGLFLRAYRG
HHHEECCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA