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The map label for this gene is yjdC [C]

Identifier: 146283074

GI number: 146283074

Start: 2959908

End: 2960468

Strand: Direct

Name: yjdC [C]

Synonym: PST_2734

Alternate gene names: 146283074

Gene position: 2959908-2960468 (Clockwise)

Preceding gene: 146283070

Following gene: 146283077

Centisome position: 64.8

GC content: 63.99

Gene sequence:

>561_bases
ATGGCATCGAACAAGCGCGACCAGCTGCTCAACACCGCAGAGAATCTGTTCTATCGCGAGGGTTATCACGCCACCGGCAT
CGACCGCATCCTGGCCGAGTCCGGCGTGGCCAAGATGACCCTGTACAAGCACTTCAAGTCCAAAGACGAGCTGATTCTCG
CCGTGCTGGACGCCCGTCACGAACTGATGCTGACGCGCCTGCGGGAACGGGCCGCCAGGCTGCCGCCGCGCGAAGCGCTA
CTGGGCATTTTCGATGGGCTGCACGGGATGATTCACGGCAACGATGCGTTCTGCGGCTGCCTGTTCATCAACGCTGCGGC
GGAGTATCACGATCGGGATCATCCGATCCATCGTCGCTCGTCGGCCTACAAGGCAGAGTTGCTCGACTATCTGCGCGAGC
TGCTGGAGCGTCTGGACGCGCCGCAGCCGCTGCAGCTGGCGCGGCAGCTGCAGTACCTGCTCGAAGGGGCGTTGAGCATG
GCGCACATCGAGGGGCCCGGCGAGCAGGCCTTGAACGCCAAGGCCGCCGCCGAATGCCTGCTGAACGCCGCAGGCATCTG
A

Upstream 100 bases:

>100_bases
ATAGACAGACCTGTCTGTACACTGCAAGCACCACGAACGAACGACAGCTGGAGCGAGCGACGAGCGCTCCCGCATAATGG
TCGAACCGCAGGAGGTATCC

Downstream 100 bases:

>100_bases
GCGCGCCTGTCGGGTGCGCCCGATAGGCGCCGTCAGTGGGAGCTGGCCTCGCCTTCGCGAACCCGGAACCAGGCCGCGTA
CAGCGCCGGCAGGAAGAGCA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; TetR-Family Transcriptional Regulator; Transcriptional Regulator Of TetR Family Protein; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MASNKRDQLLNTAENLFYREGYHATGIDRILAESGVAKMTLYKHFKSKDELILAVLDARHELMLTRLRERAARLPPREAL
LGIFDGLHGMIHGNDAFCGCLFINAAAEYHDRDHPIHRRSSAYKAELLDYLRELLERLDAPQPLQLARQLQYLLEGALSM
AHIEGPGEQALNAKAAAECLLNAAGI

Sequences:

>Translated_186_residues
MASNKRDQLLNTAENLFYREGYHATGIDRILAESGVAKMTLYKHFKSKDELILAVLDARHELMLTRLRERAARLPPREAL
LGIFDGLHGMIHGNDAFCGCLFINAAAEYHDRDHPIHRRSSAYKAELLDYLRELLERLDAPQPLQLARQLQYLLEGALSM
AHIEGPGEQALNAKAAAECLLNAAGI
>Mature_185_residues
ASNKRDQLLNTAENLFYREGYHATGIDRILAESGVAKMTLYKHFKSKDELILAVLDARHELMLTRLRERAARLPPREALL
GIFDGLHGMIHGNDAFCGCLFINAAAEYHDRDHPIHRRSSAYKAELLDYLRELLERLDAPQPLQLARQLQYLLEGALSMA
HIEGPGEQALNAKAAAECLLNAAGI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20829; Mature: 20698

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASNKRDQLLNTAENLFYREGYHATGIDRILAESGVAKMTLYKHFKSKDELILAVLDARH
CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHH
ELMLTRLRERAARLPPREALLGIFDGLHGMIHGNDAFCGCLFINAAAEYHDRDHPIHRRS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCCCCHHHH
SAYKAELLDYLRELLERLDAPQPLQLARQLQYLLEGALSMAHIEGPGEQALNAKAAAECL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LNAAGI
HHHCCC
>Mature Secondary Structure 
ASNKRDQLLNTAENLFYREGYHATGIDRILAESGVAKMTLYKHFKSKDELILAVLDARH
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHH
ELMLTRLRERAARLPPREALLGIFDGLHGMIHGNDAFCGCLFINAAAEYHDRDHPIHRRS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCCCCHHHH
SAYKAELLDYLRELLERLDAPQPLQLARQLQYLLEGALSMAHIEGPGEQALNAKAAAECL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LNAAGI
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA