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The map label for this gene is ydcR [H]

Identifier: 146283070

GI number: 146283070

Start: 2955473

End: 2956909

Strand: Direct

Name: ydcR [H]

Synonym: PST_2731

Alternate gene names: 146283070

Gene position: 2955473-2956909 (Clockwise)

Preceding gene: 146283069

Following gene: 146283074

Centisome position: 64.71

GC content: 66.18

Gene sequence:

>1437_bases
ATGCCCAACCGCCACGGCCCGGACACGATGAAGCGCTACGAGAAATTCGCCGATGAGATTGCCGAACTGATCCGCAGCGG
CGTGCTCGCCCCCGGGGAAAAGGTGCCCTCGGTGCGCCACGCCAGCCGCACCTATGGCGTCAGCCCGTCCACCGTGTTCC
AGGCCTACTACCTGCTGGAAGACCGCGGGCTGATCCAGGCGCGGGCGCGTTCGGGCTATTTCGTTCGCGAACATGCCAAG
CGCCCGCTGCACGAACCAGACATCAGCACCCGCCCGGCGGAAACCACCGAGGTGGGCGTCAGCGAACTGGTCTTCTCCGT
GCTCGCCTCGCTGCGCGATCCGGCCACCGTACCCTTCGGTTCGGCCTTTCCCAGCCCCGAACTGTTTCCCCTGCAACGGC
TCGCACGCTCGATGGCGCAAAGCGTGCGCGACATGCCGGCACGCGAAGTGATCGCCGAGATGACCGCGGGCAACCCGGAC
CTGCGCCGGCAGATCGCCCTGCGCTACATGGTCAGCGGCGTGATGCTGCCGATGGACGAGCTGGTGATCACCACAGGTGC
GATGGAAGCGCTTAACCTCTGCCTGCAGGTGGTGACGGAGCCGGGTGACCTGGTGGCGATCGAGTCGCCGGCGTTCTACG
CCACGCTGCAGGTGCTGGAACGGCTCAAGCTCAAAGCGGTGGAGATTCCCGTCCACCCGCGCGAAGGCATCGATCTGGAG
ATTCTCGCCGATCGCCTGGCGCACCTGCCGATCAAGGCCTGCTGGTTCATGAGCAGCCTGCAGAACCCCCTGGGCGCGAG
CATGGGCGAGGCGAAGAAGCAGCAGCTCTACGATCTGCTGCAGCGCCATCAGGTGCCGCTGATCGAGGACGACGTCTACG
CCGAGCTGTACTTCACCCGCGAGCCGCCCAAGCCGGTGAAGAGCCACGATCGCGAAGGCCTGGTGATGCATTGCGGTTCG
TTTTCCAAGAGCCTGGCGCCCGGCTACCGGGTCGGCTGGGTCGCCGGCGGCCGCTACGCCGAGCAGATCACCCGGCTGAA
GCTGATGACCACCATTTCCCCTTCCGTGCCGGCGCAAGCCGCCATTGCCGACTATCTGCAACATGGCGGCTACGACCGCC
ACCTGCGCAAGCTGCGCCACGCACTGGAGATGCAGCAGGGTGCGATGCTCGCCTCCGCCGCGCGCCATTTCCCGGCGAGC
ACGCGGGTTACGCGCCCTTCTGGGGGCTACTTTCTCTGGTTCGAATTTCCCGAGCAGGTGGACTCGCTGCAGCTGCTGCA
ACTGGCGCTGGCCCAGGGCATCAGCCTGGCCCCGGGGCCGATCTTCTCGGCCACCCAGCGCTTTCGCAACTGCGCGCGGC
TGAACCATGGCCATCCATGGGACACCCGCAGTGAGCAGGCGATGGAGCTGCTAGGCAGGATGCTGAAGTCCTTCTGA

Upstream 100 bases:

>100_bases
CTGCGTTTCCAGGTCAGCGACCTGGCCGAGCCGGACAGTCGGGTGAGCACACCGAGCACCTTCGTCGCCCCCATCGCGGC
GCTACGCCAGTAGACTGGCC

Downstream 100 bases:

>100_bases
GGGCCTGACTCAGGCGCAATCCACCGGTAGCTGCCCGCGGCCGCTCTTCATCAGGTACATGCGCTCATCGGCCTGCTTGA
GCAGCTGCGCCTCCACTTCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MPNRHGPDTMKRYEKFADEIAELIRSGVLAPGEKVPSVRHASRTYGVSPSTVFQAYYLLEDRGLIQARARSGYFVREHAK
RPLHEPDISTRPAETTEVGVSELVFSVLASLRDPATVPFGSAFPSPELFPLQRLARSMAQSVRDMPAREVIAEMTAGNPD
LRRQIALRYMVSGVMLPMDELVITTGAMEALNLCLQVVTEPGDLVAIESPAFYATLQVLERLKLKAVEIPVHPREGIDLE
ILADRLAHLPIKACWFMSSLQNPLGASMGEAKKQQLYDLLQRHQVPLIEDDVYAELYFTREPPKPVKSHDREGLVMHCGS
FSKSLAPGYRVGWVAGGRYAEQITRLKLMTTISPSVPAQAAIADYLQHGGYDRHLRKLRHALEMQQGAMLASAARHFPAS
TRVTRPSGGYFLWFEFPEQVDSLQLLQLALAQGISLAPGPIFSATQRFRNCARLNHGHPWDTRSEQAMELLGRMLKSF

Sequences:

>Translated_478_residues
MPNRHGPDTMKRYEKFADEIAELIRSGVLAPGEKVPSVRHASRTYGVSPSTVFQAYYLLEDRGLIQARARSGYFVREHAK
RPLHEPDISTRPAETTEVGVSELVFSVLASLRDPATVPFGSAFPSPELFPLQRLARSMAQSVRDMPAREVIAEMTAGNPD
LRRQIALRYMVSGVMLPMDELVITTGAMEALNLCLQVVTEPGDLVAIESPAFYATLQVLERLKLKAVEIPVHPREGIDLE
ILADRLAHLPIKACWFMSSLQNPLGASMGEAKKQQLYDLLQRHQVPLIEDDVYAELYFTREPPKPVKSHDREGLVMHCGS
FSKSLAPGYRVGWVAGGRYAEQITRLKLMTTISPSVPAQAAIADYLQHGGYDRHLRKLRHALEMQQGAMLASAARHFPAS
TRVTRPSGGYFLWFEFPEQVDSLQLLQLALAQGISLAPGPIFSATQRFRNCARLNHGHPWDTRSEQAMELLGRMLKSF
>Mature_477_residues
PNRHGPDTMKRYEKFADEIAELIRSGVLAPGEKVPSVRHASRTYGVSPSTVFQAYYLLEDRGLIQARARSGYFVREHAKR
PLHEPDISTRPAETTEVGVSELVFSVLASLRDPATVPFGSAFPSPELFPLQRLARSMAQSVRDMPAREVIAEMTAGNPDL
RRQIALRYMVSGVMLPMDELVITTGAMEALNLCLQVVTEPGDLVAIESPAFYATLQVLERLKLKAVEIPVHPREGIDLEI
LADRLAHLPIKACWFMSSLQNPLGASMGEAKKQQLYDLLQRHQVPLIEDDVYAELYFTREPPKPVKSHDREGLVMHCGSF
SKSLAPGYRVGWVAGGRYAEQITRLKLMTTISPSVPAQAAIADYLQHGGYDRHLRKLRHALEMQQGAMLASAARHFPAST
RVTRPSGGYFLWFEFPEQVDSLQLLQLALAQGISLAPGPIFSATQRFRNCARLNHGHPWDTRSEQAMELLGRMLKSF

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=358, Percent_Identity=24.8603351955307, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI33469970, Length=358, Percent_Identity=24.8603351955307, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI4507369, Length=311, Percent_Identity=23.7942122186495, Blast_Score=85, Evalue=2e-16,
Organism=Escherichia coli, GI1787710, Length=467, Percent_Identity=46.4668094218415, Blast_Score=428, Evalue=1e-121,
Organism=Escherichia coli, GI1790797, Length=465, Percent_Identity=37.8494623655914, Blast_Score=310, Evalue=1e-85,
Organism=Saccharomyces cerevisiae, GI6321929, Length=330, Percent_Identity=22.4242424242424, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322401, Length=305, Percent_Identity=25.5737704918033, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321000, Length=248, Percent_Identity=23.7903225806452, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21356535, Length=317, Percent_Identity=23.9747634069401, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI18859735, Length=284, Percent_Identity=23.943661971831, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53347; Mature: 53216

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNRHGPDTMKRYEKFADEIAELIRSGVLAPGEKVPSVRHASRTYGVSPSTVFQAYYLLE
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
DRGLIQARARSGYFVREHAKRPLHEPDISTRPAETTEVGVSELVFSVLASLRDPATVPFG
CCCHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
SAFPSPELFPLQRLARSMAQSVRDMPAREVIAEMTAGNPDLRRQIALRYMVSGVMLPMDE
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
LVITTGAMEALNLCLQVVTEPGDLVAIESPAFYATLQVLERLKLKAVEIPVHPREGIDLE
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHEECCCCCCCCCCHH
ILADRLAHLPIKACWFMSSLQNPLGASMGEAKKQQLYDLLQRHQVPLIEDDVYAELYFTR
HHHHHHHHCCHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC
EPPKPVKSHDREGLVMHCGSFSKSLAPGYRVGWVAGGRYAEQITRLKLMTTISPSVPAQA
CCCCCCCCCCCCCEEEECCCHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHH
AIADYLQHGGYDRHLRKLRHALEMQQGAMLASAARHFPASTRVTRPSGGYFLWFEFPEQV
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEECCHHHH
DSLQLLQLALAQGISLAPGPIFSATQRFRNCARLNHGHPWDTRSEQAMELLGRMLKSF
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PNRHGPDTMKRYEKFADEIAELIRSGVLAPGEKVPSVRHASRTYGVSPSTVFQAYYLLE
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
DRGLIQARARSGYFVREHAKRPLHEPDISTRPAETTEVGVSELVFSVLASLRDPATVPFG
CCCHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
SAFPSPELFPLQRLARSMAQSVRDMPAREVIAEMTAGNPDLRRQIALRYMVSGVMLPMDE
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
LVITTGAMEALNLCLQVVTEPGDLVAIESPAFYATLQVLERLKLKAVEIPVHPREGIDLE
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHEECCCCCCCCCCHH
ILADRLAHLPIKACWFMSSLQNPLGASMGEAKKQQLYDLLQRHQVPLIEDDVYAELYFTR
HHHHHHHHCCHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC
EPPKPVKSHDREGLVMHCGSFSKSLAPGYRVGWVAGGRYAEQITRLKLMTTISPSVPAQA
CCCCCCCCCCCCCEEEECCCHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHH
AIADYLQHGGYDRHLRKLRHALEMQQGAMLASAARHFPASTRVTRPSGGYFLWFEFPEQV
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEECCHHHH
DSLQLLQLALAQGISLAPGPIFSATQRFRNCARLNHGHPWDTRSEQAMELLGRMLKSF
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]