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The map label for this gene is yhaJ [H]

Identifier: 146283023

GI number: 146283023

Start: 2909220

End: 2910527

Strand: Direct

Name: yhaJ [H]

Synonym: PST_2684

Alternate gene names: 146283023

Gene position: 2909220-2910527 (Clockwise)

Preceding gene: 146283022

Following gene: 146283024

Centisome position: 63.7

GC content: 65.9

Gene sequence:

>1308_bases
TTGCCTTGGCCCGCCGAGCTACTTCGGCTCGCAGGTCAGCTTGATGCGCAGCCGGATCACGTCGCGCTTGAATTTCGACG
TCAGCGCCTTGCGCTCACCGGGTTGCAGCTCCGTGCGTCGGGTGCGCGGTGCTTCCGGGCCGTTCTGGAACACGGCCGTA
CACACGGCCGCCGTCTCCCCGTAGTTGTGCAGCAGAAGGCCGGCCAGATCGCGGTCGATGACCTGCGGCGTTACGGTGAC
TTCGGCGCCGTTGAGCTGCTGATCGATGTCCACGGGATAGGTGGCGGCGCTGGCCGCGACTGGCAACAGGGCAAAGAGCA
GGTAACCGATTGTTTTCATTTGACGGGGCTCCTCGACAGAAGGGCCAGCGTAACAGACCTTGCTAAAGGAACCGAAGGAA
TGAAAGTGCCCCGTGTGACCCTCGATCAGTGGCGCACTCTGCAGGCGGTCATCGACCACGGCGGCTTCGCCCAGGCGGCC
GAAGCGCTGCATCGTTCGCAATCGTCGGTCAGCTACACCGTGGCGCGCATGCAGGAGCAGCTCGGCGTGCCGCTGCTACG
CATCGACGGGCGCAAGGCGGTGCTGACCGAGGCCGGTGAGGTGCTGCTGCGCCGCTCGCGACAGCTGGTCACCCAGGCCA
GCCAGCTGGAAGAGCTGGCGCACCACATGGAGCAGGGTTGGGAAGCCGAGGTGCGGCTGGTGGTCGACGCCGCCTACCCC
AGCGCCAAGCTGATCCGCGCCCTCAGCGACTTCATGCCCAAGAGCCGTGGCTGCCGGGTTCGGCTGCGCGAGGAGGTATT
GTCCGGCGTGGAAGAGGTGCTGAAGGACGGCACCGCGGATCTGGCCATCAGCGGTCTGGACATCACTGGCTATCTGGGCA
GCGAACTCAGCACCGTCGAGTTCGTCGCCGTCGCCCATGCCGACCACGCCCTGCATCAACTGGGACGCAAGCTCAGCGTG
CAGGATCTGCAAAGCCAGATGCAGATCGTGGTGCGCGACACCGGCCTGCGTCAGCCGCGCGATGCCGGCTGGCTGGGCGC
CGAACAGCGCTGGACGGTGGGCAGTCTGGCTACCTCAGTGGCCTTCGTCAGCAGCGGCCTGGGCTTCGCCTGGCTGCCGC
GCCACCTGATCGGCCGCGAGCTGGCCGAAGGTCTGCTCAAACCGCTGCCACTGGTCCAAGGCAGCATTCGCCGGCCGCTG
TTCTATCTCTACACTAACCACGACAAACCGCTCGGGCCGGCTACCCGGATTCTCATCGAGCTGATCAAGACGTACGATGC
CGGACAGGCCAACTCGCTGGCCGGCTGA

Upstream 100 bases:

>100_bases
GCTGGGGCGTGACGTGATCCTGGTGGCCATCGCCACAGGCATCGTTTACGAAATCCTGGAGAACGTACTGGATTGATGCC
GGACGGCCGGGGTCGGGCGG

Downstream 100 bases:

>100_bases
CCGCTTTCCCCAACATCAGGAAACCATCATGTTGAAACGCATCGCCCTCACCGCCTGTTCCGTACTGCTGGCCGGCAACC
TGCTCGCTGCCGAAAACCCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MPWPAELLRLAGQLDAQPDHVALEFRRQRLALTGLQLRASGARCFRAVLEHGRTHGRRLPVVVQQKAGQIAVDDLRRYGD
FGAVELLIDVHGIGGGAGRDWQQGKEQVTDCFHLTGLLDRRASVTDLAKGTEGMKVPRVTLDQWRTLQAVIDHGGFAQAA
EALHRSQSSVSYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVTQASQLEELAHHMEQGWEAEVRLVVDAAYP
SAKLIRALSDFMPKSRGCRVRLREEVLSGVEEVLKDGTADLAISGLDITGYLGSELSTVEFVAVAHADHALHQLGRKLSV
QDLQSQMQIVVRDTGLRQPRDAGWLGAEQRWTVGSLATSVAFVSSGLGFAWLPRHLIGRELAEGLLKPLPLVQGSIRRPL
FYLYTNHDKPLGPATRILIELIKTYDAGQANSLAG

Sequences:

>Translated_435_residues
MPWPAELLRLAGQLDAQPDHVALEFRRQRLALTGLQLRASGARCFRAVLEHGRTHGRRLPVVVQQKAGQIAVDDLRRYGD
FGAVELLIDVHGIGGGAGRDWQQGKEQVTDCFHLTGLLDRRASVTDLAKGTEGMKVPRVTLDQWRTLQAVIDHGGFAQAA
EALHRSQSSVSYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVTQASQLEELAHHMEQGWEAEVRLVVDAAYP
SAKLIRALSDFMPKSRGCRVRLREEVLSGVEEVLKDGTADLAISGLDITGYLGSELSTVEFVAVAHADHALHQLGRKLSV
QDLQSQMQIVVRDTGLRQPRDAGWLGAEQRWTVGSLATSVAFVSSGLGFAWLPRHLIGRELAEGLLKPLPLVQGSIRRPL
FYLYTNHDKPLGPATRILIELIKTYDAGQANSLAG
>Mature_434_residues
PWPAELLRLAGQLDAQPDHVALEFRRQRLALTGLQLRASGARCFRAVLEHGRTHGRRLPVVVQQKAGQIAVDDLRRYGDF
GAVELLIDVHGIGGGAGRDWQQGKEQVTDCFHLTGLLDRRASVTDLAKGTEGMKVPRVTLDQWRTLQAVIDHGGFAQAAE
ALHRSQSSVSYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVTQASQLEELAHHMEQGWEAEVRLVVDAAYPS
AKLIRALSDFMPKSRGCRVRLREEVLSGVEEVLKDGTADLAISGLDITGYLGSELSTVEFVAVAHADHALHQLGRKLSVQ
DLQSQMQIVVRDTGLRQPRDAGWLGAEQRWTVGSLATSVAFVSSGLGFAWLPRHLIGRELAEGLLKPLPLVQGSIRRPLF
YLYTNHDKPLGPATRILIELIKTYDAGQANSLAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=255, Percent_Identity=30.9803921568627, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87082024, Length=266, Percent_Identity=28.9473684210526, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787949, Length=281, Percent_Identity=26.6903914590747, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1786508, Length=242, Percent_Identity=26.0330578512397, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87082132, Length=301, Percent_Identity=25.9136212624585, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786713, Length=242, Percent_Identity=25.6198347107438, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789639, Length=283, Percent_Identity=24.7349823321555, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 47804; Mature: 47673

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWPAELLRLAGQLDAQPDHVALEFRRQRLALTGLQLRASGARCFRAVLEHGRTHGRRLP
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC
VVVQQKAGQIAVDDLRRYGDFGAVELLIDVHGIGGGAGRDWQQGKEQVTDCFHLTGLLDR
EEEECCCCCEEHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHC
RASVTDLAKGTEGMKVPRVTLDQWRTLQAVIDHGGFAQAAEALHRSQSSVSYTVARMQEQ
CCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHH
LGVPLLRIDGRKAVLTEAGEVLLRRSRQLVTQASQLEELAHHMEQGWEAEVRLVVDAAYP
HCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
SAKLIRALSDFMPKSRGCRVRLREEVLSGVEEVLKDGTADLAISGLDITGYLGSELSTVE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCHHH
FVAVAHADHALHQLGRKLSVQDLQSQMQIVVRDTGLRQPRDAGWLGAEQRWTVGSLATSV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
AFVSSGLGFAWLPRHLIGRELAEGLLKPLPLVQGSIRRPLFYLYTNHDKPLGPATRILIE
HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEECCCCCCCHHHHHHHH
LIKTYDAGQANSLAG
HHHHCCCCCCCCCCC
>Mature Secondary Structure 
PWPAELLRLAGQLDAQPDHVALEFRRQRLALTGLQLRASGARCFRAVLEHGRTHGRRLP
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC
VVVQQKAGQIAVDDLRRYGDFGAVELLIDVHGIGGGAGRDWQQGKEQVTDCFHLTGLLDR
EEEECCCCCEEHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHC
RASVTDLAKGTEGMKVPRVTLDQWRTLQAVIDHGGFAQAAEALHRSQSSVSYTVARMQEQ
CCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHH
LGVPLLRIDGRKAVLTEAGEVLLRRSRQLVTQASQLEELAHHMEQGWEAEVRLVVDAAYP
HCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
SAKLIRALSDFMPKSRGCRVRLREEVLSGVEEVLKDGTADLAISGLDITGYLGSELSTVE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCHHH
FVAVAHADHALHQLGRKLSVQDLQSQMQIVVRDTGLRQPRDAGWLGAEQRWTVGSLATSV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
AFVSSGLGFAWLPRHLIGRELAEGLLKPLPLVQGSIRRPLFYLYTNHDKPLGPATRILIE
HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEECCCCCCCHHHHHHHH
LIKTYDAGQANSLAG
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]