| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
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The map label for this gene is lhr [C]
Identifier: 146283002
GI number: 146283002
Start: 2885210
End: 2887906
Strand: Direct
Name: lhr [C]
Synonym: PST_2663
Alternate gene names: 146283002
Gene position: 2885210-2887906 (Clockwise)
Preceding gene: 146283001
Following gene: 146283003
Centisome position: 63.17
GC content: 68.71
Gene sequence:
>2697_bases ATGAAACCAAAGCACCCGGCAGCCGCTCGGCGCTCATCACAACCCCCTCCCAAGAGCCGAGCCGAGCAGCCACACGATCA CGACCCACTCCCTCAAGAAGAGGGGCCGGGGGTGGGGGACGGGGCCGAGAGCCTCGCTGCCGGCTGGTTTGCCAGCCGTG CCTGGCAACCCTTCCCGTTCCAGCAGGAGGTCTGGCAAGCGATAGGCGATGGCGAATCGGGCCTGCTGCATGCCACCACC GGCTCCGGCAAGACCTACGCCGTCTGGCTCGGAGCCCTGAATCGCTTTGCGACCAAGGCACCCTCTCCCACCGCGACGGA CAAGCCGGCGCCTTTGACGGTGCTCTGGATCACCCCGATGCGCGCCCTGGCCGCCGACACCGCCCGCGCCTTGCAGGCGC CGCTGGACGACCTCGGCATCGGCTGGAGCATCGGCCTGCGCACCGGCGATACCAGCGGTGCCGAGCGTGCGCGGCAGGGA CGGCGTCTGCCCAGCGCGCTGGTCACCACGCCGGAAAGCCTGACCCTGCTGCTGACCCGCGCCGATGCACGCCAGGCCTT CGCCGGTTTGCGCATGCTGGTGGTGGACGAATGGCACGAGCTCTTGGGCAACAAGCGCGGCGTGCAACTGCAACTGGCGC TGGCGCGCCTGCGCCAGTGGATGCCGGAGCTGATCGTCTGGGGCCTTTCCGCCACCCTCGGCAACCAGCCCCACGCGCTG GACGTGCTGCTGCACCCCGGCAGCGGCAGGCTGGTGCAGGGCAAGGTGGACAAGGACCTGCGCGTCGACACCCTGCTGCC GCCGAGCATCGAGCGCTTCCCCTGGGCCGGTCATCTCGGCCTGCGCATGCTGCCGCAGGTGGTCGAAGAGATCGACTCCG CCGCGACCACCCTGGTGTTCACCAATACCCGTTCGCAGTCGGAAATCTGGTATCAGGCGCTGCTGGATGCGCGGCCGGAC TGGGCCGGGTTGATCGCCCTGCACCACGGCTCGCTCGCACGCGAGGTGCGCGACTGGGTCGAGCTGGGCCTCAAGCAGGG CGCGCTGAAAGCGGTGGTCTGCACCTCCAGCCTGGATCTTGGCGTGGATTTCCTGCCGGTCGAGCGGGTGTTGCAGATCG GCTCGCCCAAGGGCGTGGCGCGGCTGATGCAGCGCGCCGGCCGCTCCGGACACGCGCCGGGGCGAACCTCGCGGGTCACC CTGGTGCCCACCCACAGCGTGGAGGTGGTGGAAGCTGCCGCCGCCCAGGTGGCCATCGCCGAGCGTCGCATCGAGGCCCG CAGCGCACCGCATCGCCCGCTCGACGTGCTGGTGCAGCACCTGGTGAGCATGGCCCTGGGCGGCGGCTTCCGCCCGGATG AGCTGTACGCCGAGGTGCGCCAGGCCTGGTCCTACCGGGAGCTGACCGACGAGCACTGGCAATGGGCGCTGGCCTTCGTG CGCCATGGCGGGCATTCGCTGACGGCCTACCCCGACTATCAGCGGGTCGAGCCGGATGAAACCGGTCTCTGGAAAGTGCC CAGTCGCCGCGTGGCGCTGCGCCATCGCATGAGCATCGGCACCATCGTCAGCGACGCCAGCCTGACGGTGAAGTTCTGGG CCAAGGGCGGCAGCGGGCGTTCGCTGGGCAGCGTCGAGGAAGGTTTCATCGCGCGCCTGCGCCCCGGCGACAACTTCCTC TTCGGCGGTCGCCTGCTGGAACTGGTGCGGGTCGAGAACATGACCGCCTACGTCAGCCGCGCGACGGGCAAGAAGGCTGC CGTGCCGCGCTGGAACGGCGGTCGCATGCCGCTATCCAGCGAGCTGGCCGATGCCGTGGTCGAGCAGCTCGGTGCTGCCT CGCGCGAGCAGTTCACCACCCCCGAAATGCGCCTGGTCGAACCGCTGCTTCGCGTCCAGATGGACTGGTCGGCGCTGCCC ACCAAGACCACCTTGCTGGCCGAGGTGATGAAGTCCCGCGAAGGCTGGCACCTGTTCCTCTACCCCTTCGCCGGGCGCCA TGTGCACCTGGGTCTGGCCAGTCTGCTGGCCTGGCGCATGGGCCAGCGTCAACCGCTGACCTTCTCCATCGCGGTCAACG ACTATGGCTTCGAACTGCTTTCGGCCACCGAGGTGGACTGGCTGCACTGGCTGACGCCGGAGCTTTTCAGCGAAAACGAC CTGCTGCACGACGTGCTCGCCAGCCTCAATGCCAGTGAGCTGGCGCGCCGCCGTTTTCGCGAGATCGCGCGCATCGCCGG GCTGGTATTTTCCGGCTACCCGGGTGCGCAGAAGAGCGCGCGTCAGCTGCAGGCTTCCAGTGGCCTGTTCTTCGATGTGT TCCGCCAGTACGATCCGGGCAATCTGCTGCTGACCCAGGCCGAGGAAGAGGTGCTGCGCCAGGAGCTGGAAGTCGAGCGC TTGCAGCACACGTTGCAACGCCTGCAACAGCGCCGTCTGGACGTCCATCAGGTGCGGCGCGCGACCCCGCTGGCCTTTCC GCTGATGGTCGAGCGCTTTCGCGAAAGCATGACTTCGGAGAAGCTCGCCGACCGCATCCGCCGCATGGTGGCGGAGCTGG ACAAGGCTGCTGGTCCCGGCGGCTACCAGCCCGAGCCACAATCGACGATCACCATCGAGCGCGACGCCCCGCGACCACGC AAGCCGCGCACACGCAAGGACGGCACGCCGCGCACGAGGAAGGCCAAACCCGCCTGA
Upstream 100 bases:
>100_bases AGAGCGGCATCGCCGTGCGCTTCCCGCGCATGCTGCGCTGGCGCCTCGACAAGCCGGTGGAGGAAGCCGATACCCTGGCC ACCCTGCGGGAATTGCTGGG
Downstream 100 bases:
>100_bases TGAACCGAACCACAGGACCAACCGACGGATCATGAACGCCTACCAGCCCATCGAACTGGCCGGCGCCACACTCTGGCTGC TGGCGGAAAAGGCGATCTAC
Product: DEAD-box ATP dependent DNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 898; Mature: 898
Protein sequence:
>898_residues MKPKHPAAARRSSQPPPKSRAEQPHDHDPLPQEEGPGVGDGAESLAAGWFASRAWQPFPFQQEVWQAIGDGESGLLHATT GSGKTYAVWLGALNRFATKAPSPTATDKPAPLTVLWITPMRALAADTARALQAPLDDLGIGWSIGLRTGDTSGAERARQG RRLPSALVTTPESLTLLLTRADARQAFAGLRMLVVDEWHELLGNKRGVQLQLALARLRQWMPELIVWGLSATLGNQPHAL DVLLHPGSGRLVQGKVDKDLRVDTLLPPSIERFPWAGHLGLRMLPQVVEEIDSAATTLVFTNTRSQSEIWYQALLDARPD WAGLIALHHGSLAREVRDWVELGLKQGALKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLMQRAGRSGHAPGRTSRVT LVPTHSVEVVEAAAAQVAIAERRIEARSAPHRPLDVLVQHLVSMALGGGFRPDELYAEVRQAWSYRELTDEHWQWALAFV RHGGHSLTAYPDYQRVEPDETGLWKVPSRRVALRHRMSIGTIVSDASLTVKFWAKGGSGRSLGSVEEGFIARLRPGDNFL FGGRLLELVRVENMTAYVSRATGKKAAVPRWNGGRMPLSSELADAVVEQLGAASREQFTTPEMRLVEPLLRVQMDWSALP TKTTLLAEVMKSREGWHLFLYPFAGRHVHLGLASLLAWRMGQRQPLTFSIAVNDYGFELLSATEVDWLHWLTPELFSEND LLHDVLASLNASELARRRFREIARIAGLVFSGYPGAQKSARQLQASSGLFFDVFRQYDPGNLLLTQAEEEVLRQELEVER LQHTLQRLQQRRLDVHQVRRATPLAFPLMVERFRESMTSEKLADRIRRMVAELDKAAGPGGYQPEPQSTITIERDAPRPR KPRTRKDGTPRTRKAKPA
Sequences:
>Translated_898_residues MKPKHPAAARRSSQPPPKSRAEQPHDHDPLPQEEGPGVGDGAESLAAGWFASRAWQPFPFQQEVWQAIGDGESGLLHATT GSGKTYAVWLGALNRFATKAPSPTATDKPAPLTVLWITPMRALAADTARALQAPLDDLGIGWSIGLRTGDTSGAERARQG RRLPSALVTTPESLTLLLTRADARQAFAGLRMLVVDEWHELLGNKRGVQLQLALARLRQWMPELIVWGLSATLGNQPHAL DVLLHPGSGRLVQGKVDKDLRVDTLLPPSIERFPWAGHLGLRMLPQVVEEIDSAATTLVFTNTRSQSEIWYQALLDARPD WAGLIALHHGSLAREVRDWVELGLKQGALKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLMQRAGRSGHAPGRTSRVT LVPTHSVEVVEAAAAQVAIAERRIEARSAPHRPLDVLVQHLVSMALGGGFRPDELYAEVRQAWSYRELTDEHWQWALAFV RHGGHSLTAYPDYQRVEPDETGLWKVPSRRVALRHRMSIGTIVSDASLTVKFWAKGGSGRSLGSVEEGFIARLRPGDNFL FGGRLLELVRVENMTAYVSRATGKKAAVPRWNGGRMPLSSELADAVVEQLGAASREQFTTPEMRLVEPLLRVQMDWSALP TKTTLLAEVMKSREGWHLFLYPFAGRHVHLGLASLLAWRMGQRQPLTFSIAVNDYGFELLSATEVDWLHWLTPELFSEND LLHDVLASLNASELARRRFREIARIAGLVFSGYPGAQKSARQLQASSGLFFDVFRQYDPGNLLLTQAEEEVLRQELEVER LQHTLQRLQQRRLDVHQVRRATPLAFPLMVERFRESMTSEKLADRIRRMVAELDKAAGPGGYQPEPQSTITIERDAPRPR KPRTRKDGTPRTRKAKPA >Mature_898_residues MKPKHPAAARRSSQPPPKSRAEQPHDHDPLPQEEGPGVGDGAESLAAGWFASRAWQPFPFQQEVWQAIGDGESGLLHATT GSGKTYAVWLGALNRFATKAPSPTATDKPAPLTVLWITPMRALAADTARALQAPLDDLGIGWSIGLRTGDTSGAERARQG RRLPSALVTTPESLTLLLTRADARQAFAGLRMLVVDEWHELLGNKRGVQLQLALARLRQWMPELIVWGLSATLGNQPHAL DVLLHPGSGRLVQGKVDKDLRVDTLLPPSIERFPWAGHLGLRMLPQVVEEIDSAATTLVFTNTRSQSEIWYQALLDARPD WAGLIALHHGSLAREVRDWVELGLKQGALKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLMQRAGRSGHAPGRTSRVT LVPTHSVEVVEAAAAQVAIAERRIEARSAPHRPLDVLVQHLVSMALGGGFRPDELYAEVRQAWSYRELTDEHWQWALAFV RHGGHSLTAYPDYQRVEPDETGLWKVPSRRVALRHRMSIGTIVSDASLTVKFWAKGGSGRSLGSVEEGFIARLRPGDNFL FGGRLLELVRVENMTAYVSRATGKKAAVPRWNGGRMPLSSELADAVVEQLGAASREQFTTPEMRLVEPLLRVQMDWSALP TKTTLLAEVMKSREGWHLFLYPFAGRHVHLGLASLLAWRMGQRQPLTFSIAVNDYGFELLSATEVDWLHWLTPELFSEND LLHDVLASLNASELARRRFREIARIAGLVFSGYPGAQKSARQLQASSGLFFDVFRQYDPGNLLLTQAEEEVLRQELEVER LQHTLQRLQQRRLDVHQVRRATPLAFPLMVERFRESMTSEKLADRIRRMVAELDKAAGPGGYQPEPQSTITIERDAPRPR KPRTRKDGTPRTRKAKPA
Specific function: Unknown
COG id: COG1201
COG function: function code R; Lhr-like helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787942, Length=881, Percent_Identity=27.1282633371169, Blast_Score=218, Evalue=2e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR013701 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR017170 [H]
Pfam domain/function: PF00270 DEAD; PF08494 DEAD_assoc; PF00271 Helicase_C [H]
EC number: 3.6.1.-
Molecular weight: Translated: 99676; Mature: 99676
Theoretical pI: Translated: 10.18; Mature: 10.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPKHPAAARRSSQPPPKSRAEQPHDHDPLPQEEGPGVGDGAESLAAGWFASRAWQPFPF CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC QQEVWQAIGDGESGLLHATTGSGKTYAVWLGALNRFATKAPSPTATDKPAPLTVLWITPM HHHHHHHHCCCCCCEEEEECCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCH RALAADTARALQAPLDDLGIGWSIGLRTGDTSGAERARQGRRLPSALVTTPESLTLLLTR HHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHCCCCCEEEEEEC ADARQAFAGLRMLVVDEWHELLGNKRGVQLQLALARLRQWMPELIVWGLSATLGNQPHAL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE DVLLHPGSGRLVQGKVDKDLRVDTLLPPSIERFPWAGHLGLRMLPQVVEEIDSAATTLVF EEEEECCCCCEEECCCCCCCEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHEEEEE TNTRSQSEIWYQALLDARPDWAGLIALHHGSLAREVRDWVELGLKQGALKAVVCTSSLDL ECCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCC GVDFLPVERVLQIGSPKGVARLMQRAGRSGHAPGRTSRVTLVPTHSVEVVEAAAAQVAIA CCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH ERRIEARSAPHRPLDVLVQHLVSMALGGGFRPDELYAEVRQAWSYRELTDEHWQWALAFV HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHGGHSLTAYPDYQRVEPDETGLWKVPSRRVALRHRMSIGTIVSDASLTVKFWAKGGSGR HCCCCCEEECCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHEEECCEEEEEEEECCCCCC SLGSVEEGFIARLRPGDNFLFGGRLLELVRVENMTAYVSRATGKKAAVPRWNGGRMPLSS CCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH ELADAVVEQLGAASREQFTTPEMRLVEPLLRVQMDWSALPTKTTLLAEVMKSREGWHLFL HHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEE YPFAGRHVHLGLASLLAWRMGQRQPLTFSIAVNDYGFELLSATEVDWLHWLTPELFSEND EECCCCEEHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCHHHHHCCHHHHCCCH LLHDVLASLNASELARRRFREIARIAGLVFSGYPGAQKSARQLQASSGLFFDVFRQYDPG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCC NLLLTQAEEEVLRQELEVERLQHTLQRLQQRRLDVHQVRRATPLAFPLMVERFRESMTSE CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHH KLADRIRRMVAELDKAAGPGGYQPEPQSTITIERDAPRPRKPRTRKDGTPRTRKAKPA HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKPKHPAAARRSSQPPPKSRAEQPHDHDPLPQEEGPGVGDGAESLAAGWFASRAWQPFPF CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC QQEVWQAIGDGESGLLHATTGSGKTYAVWLGALNRFATKAPSPTATDKPAPLTVLWITPM HHHHHHHHCCCCCCEEEEECCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCH RALAADTARALQAPLDDLGIGWSIGLRTGDTSGAERARQGRRLPSALVTTPESLTLLLTR HHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHCCCCCEEEEEEC ADARQAFAGLRMLVVDEWHELLGNKRGVQLQLALARLRQWMPELIVWGLSATLGNQPHAL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE DVLLHPGSGRLVQGKVDKDLRVDTLLPPSIERFPWAGHLGLRMLPQVVEEIDSAATTLVF EEEEECCCCCEEECCCCCCCEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHEEEEE TNTRSQSEIWYQALLDARPDWAGLIALHHGSLAREVRDWVELGLKQGALKAVVCTSSLDL ECCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCC GVDFLPVERVLQIGSPKGVARLMQRAGRSGHAPGRTSRVTLVPTHSVEVVEAAAAQVAIA CCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH ERRIEARSAPHRPLDVLVQHLVSMALGGGFRPDELYAEVRQAWSYRELTDEHWQWALAFV HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHGGHSLTAYPDYQRVEPDETGLWKVPSRRVALRHRMSIGTIVSDASLTVKFWAKGGSGR HCCCCCEEECCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHEEECCEEEEEEEECCCCCC SLGSVEEGFIARLRPGDNFLFGGRLLELVRVENMTAYVSRATGKKAAVPRWNGGRMPLSS CCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH ELADAVVEQLGAASREQFTTPEMRLVEPLLRVQMDWSALPTKTTLLAEVMKSREGWHLFL HHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEE YPFAGRHVHLGLASLLAWRMGQRQPLTFSIAVNDYGFELLSATEVDWLHWLTPELFSEND EECCCCEEHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCHHHHHCCHHHHCCCH LLHDVLASLNASELARRRFREIARIAGLVFSGYPGAQKSARQLQASSGLFFDVFRQYDPG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCC NLLLTQAEEEVLRQELEVERLQHTLQRLQQRRLDVHQVRRATPLAFPLMVERFRESMTSE CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHH KLADRIRRMVAELDKAAGPGGYQPEPQSTITIERDAPRPRKPRTRKDGTPRTRKAKPA HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on acid anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]