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The map label for this gene is csd [H]

Identifier: 146282951

GI number: 146282951

Start: 2831838

End: 2832971

Strand: Direct

Name: csd [H]

Synonym: PST_2612

Alternate gene names: 146282951

Gene position: 2831838-2832971 (Clockwise)

Preceding gene: 146282946

Following gene: 146282966

Centisome position: 62.0

GC content: 63.93

Gene sequence:

>1134_bases
ATGATTCACATAAATGACGAATTTCCGCAAATAGTCGGTTTGCGATATCTCAACCATGCTGCCGTCGCGCCCTGGCCTCG
GCGAGCCGCCAGTGCCGTCAGTGCCTTTGCCGAGCAGAACGCCACCCTCGGCGCACGTGACTATCCGCAATGGCTTACGG
TCGAGCGCAGCCTGCGCCAGCGCCTTACGCGCCTGCTCAACGCACCGACCAGCGCCGACGTGGCACTGGTCAAGAACACG
TCCGAAGCACTGTCGTTTGTCGGCTTTGGCCTGGACTGGAAAAGCGGTGATCGCATCGTCATCAGCGATGAAGAATTTCC
ATCCAACCGTGTCGTCTGGGAGGCACTGCAGCCATTCGGCGTGGAGGTCGTTCAGGTCAGCCTTAAGGGTGCCGATCCGG
AAGGCGACCTGCTGGCGGCCTGCGGGCCGCGGGTACGACTGATGGCGATCAGCGCGGTGCAGTACGCCAGCGGCCTGCGC
CTGGATCTTGCACGTCTGGGCGAAGGCTGCGAGCAGCGCGGTGTGCTGCTGTGCATCGACGCGATCCAGCAGCTTGGCGC
CCTGCCCTTCGATGTGCAGCAGAGTCGCTGCGCTTTCGCCATGGCCGACGGCCACAAGTGGATGCTCGGCCCCGAGGGGC
TCGGCGTCTTCTATTGCCGGAGCGACCTGCGCGATCAGCTGAAGCTGCACGAGTACGGCTGGCACATGCTGGAACACGCC
GGCGATTACGATCGCACGGACTGGGAACCGGCCCGCAGCGCACGACGCTTCGAATGCGGCAGTCCCAATCTGCTCGGGGC
GATGGCGCTCGAGGCCAGTCTTTCCTTGCTGGAGGAAGTGGGCATGGAGCAGGTCGCCGCAGCCCTCGACGAACGCGTCG
AATGGCTGTGTCGGGGATTAGGCGATCTGGGGGGAGTCGACATCCTGTCGCCGACAACAGCCGAGCGTCGGGCCGGCATC
CTCACCTTCCGCCTGCATGGCTGGGACAATGCAGCGCTCTTCGAGCGGCTGAAGGCGGCGCAAGTCGTCTGCGCCTTGCG
TGGCGGCGGCATTCGCTTCTCTCCGCATTTCTACACGCCGCAGCGCGTCATCGATGAAACCCTGGCGCTTCTGCATGAGC
TGGCAAGTCACTGA

Upstream 100 bases:

>100_bases
CGGACCTTACGGGGTTCATTCTGCATAGGAGGCTGCTTAGATGAGAAATCGAGGCGGTCATTATGCCTAACCGGTCATCA
AATGCACGGGGCATCCACCG

Downstream 100 bases:

>100_bases
CGGCGATCAGCCAGCGAGACATGTATTCCAAATGCGTTTAAAAAGCGCGGAAATCCGCCAGCAGACCGCTAATGCAGCGT
TAATACTTGAGTCACTGGCT

Product: aminotransferase, class V

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MIHINDEFPQIVGLRYLNHAAVAPWPRRAASAVSAFAEQNATLGARDYPQWLTVERSLRQRLTRLLNAPTSADVALVKNT
SEALSFVGFGLDWKSGDRIVISDEEFPSNRVVWEALQPFGVEVVQVSLKGADPEGDLLAACGPRVRLMAISAVQYASGLR
LDLARLGEGCEQRGVLLCIDAIQQLGALPFDVQQSRCAFAMADGHKWMLGPEGLGVFYCRSDLRDQLKLHEYGWHMLEHA
GDYDRTDWEPARSARRFECGSPNLLGAMALEASLSLLEEVGMEQVAAALDERVEWLCRGLGDLGGVDILSPTTAERRAGI
LTFRLHGWDNAALFERLKAAQVVCALRGGGIRFSPHFYTPQRVIDETLALLHELASH

Sequences:

>Translated_377_residues
MIHINDEFPQIVGLRYLNHAAVAPWPRRAASAVSAFAEQNATLGARDYPQWLTVERSLRQRLTRLLNAPTSADVALVKNT
SEALSFVGFGLDWKSGDRIVISDEEFPSNRVVWEALQPFGVEVVQVSLKGADPEGDLLAACGPRVRLMAISAVQYASGLR
LDLARLGEGCEQRGVLLCIDAIQQLGALPFDVQQSRCAFAMADGHKWMLGPEGLGVFYCRSDLRDQLKLHEYGWHMLEHA
GDYDRTDWEPARSARRFECGSPNLLGAMALEASLSLLEEVGMEQVAAALDERVEWLCRGLGDLGGVDILSPTTAERRAGI
LTFRLHGWDNAALFERLKAAQVVCALRGGGIRFSPHFYTPQRVIDETLALLHELASH
>Mature_377_residues
MIHINDEFPQIVGLRYLNHAAVAPWPRRAASAVSAFAEQNATLGARDYPQWLTVERSLRQRLTRLLNAPTSADVALVKNT
SEALSFVGFGLDWKSGDRIVISDEEFPSNRVVWEALQPFGVEVVQVSLKGADPEGDLLAACGPRVRLMAISAVQYASGLR
LDLARLGEGCEQRGVLLCIDAIQQLGALPFDVQQSRCAFAMADGHKWMLGPEGLGVFYCRSDLRDQLKLHEYGWHMLEHA
GDYDRTDWEPARSARRFECGSPNLLGAMALEASLSLLEEVGMEQVAAALDERVEWLCRGLGDLGGVDILSPTTAERRAGI
LTFRLHGWDNAALFERLKAAQVVCALRGGGIRFSPHFYTPQRVIDETLALLHELASH

Specific function: Cysteine Desulfurases Mobilize The Sulfur From L- Cysteine To Yield L-Alanine, An Essential Step In Sulfur Metabolism For Biosynthesis Of A Variety Of Sulfur-Containing Biomolecules. Component Of The Suf Operon, Which Is Activated And Required Under Speci

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=343, Percent_Identity=25.9475218658892, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1789175, Length=292, Percent_Identity=29.1095890410959, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI48994898, Length=228, Percent_Identity=26.7543859649123, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 41587; Mature: 41587

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHINDEFPQIVGLRYLNHAAVAPWPRRAASAVSAFAEQNATLGARDYPQWLTVERSLRQ
CEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
RLTRLLNAPTSADVALVKNTSEALSFVGFGLDWKSGDRIVISDEEFPSNRVVWEALQPFG
HHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCC
VEVVQVSLKGADPEGDLLAACGPRVRLMAISAVQYASGLRLDLARLGEGCEQRGVLLCID
EEEEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHCCCEEEHHHHCCCHHHCCEEEEHH
AIQQLGALPFDVQQSRCAFAMADGHKWMLGPEGLGVFYCRSDLRDQLKLHEYGWHMLEHA
HHHHHCCCCCCCCCCCEEEEEECCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHC
GDYDRTDWEPARSARRFECGSPNLLGAMALEASLSLLEEVGMEQVAAALDERVEWLCRGL
CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
GDLGGVDILSPTTAERRAGILTFRLHGWDNAALFERLKAAQVVCALRGGGIRFSPHFYTP
CCCCCCCCCCCCCHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHEEECCCEEECCCCCCH
QRVIDETLALLHELASH
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIHINDEFPQIVGLRYLNHAAVAPWPRRAASAVSAFAEQNATLGARDYPQWLTVERSLRQ
CEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
RLTRLLNAPTSADVALVKNTSEALSFVGFGLDWKSGDRIVISDEEFPSNRVVWEALQPFG
HHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCC
VEVVQVSLKGADPEGDLLAACGPRVRLMAISAVQYASGLRLDLARLGEGCEQRGVLLCID
EEEEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHCCCEEEHHHHCCCHHHCCEEEEHH
AIQQLGALPFDVQQSRCAFAMADGHKWMLGPEGLGVFYCRSDLRDQLKLHEYGWHMLEHA
HHHHHCCCCCCCCCCCEEEEEECCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHC
GDYDRTDWEPARSARRFECGSPNLLGAMALEASLSLLEEVGMEQVAAALDERVEWLCRGL
CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
GDLGGVDILSPTTAERRAGILTFRLHGWDNAALFERLKAAQVVCALRGGGIRFSPHFYTP
CCCCCCCCCCCCCHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHEEECCCEEECCCCCCH
QRVIDETLALLHELASH
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]