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The map label for this gene is ltrA [H]

Identifier: 146282765

GI number: 146282765

Start: 2651952

End: 2652908

Strand: Direct

Name: ltrA [H]

Synonym: PST_2424

Alternate gene names: 146282765

Gene position: 2651952-2652908 (Clockwise)

Preceding gene: 146282763

Following gene: 146282768

Centisome position: 58.06

GC content: 69.49

Gene sequence:

>957_bases
ATGCTGCCAGACGCCCTTTCCGCTCAGCTCGAACTCTTCATCGACGTGCTCGAATGCGGCAGCTTTTCCGCTGCCGCGCG
CCGGCATGGCCTGACGCCCTCCGCCGTGGCGCGGCGAGTCGATGCGCTGGAAGCGGCGCTGGGCTGCCAGCTGTTCAGCC
GCAGCACCCATGCCGTGCGGGCAATGCCTGCCGCCCTTGCCTTCGCCGAGCGCGCCCGGCGCATCGTTCAGGAACTGCAC
CTGGCCCGGGCCGAGGCGACATCCCTGGACAGTGCACCGGAAGGCCGCATCCGCATCGACGCACCGGCGCCGTTCGGGCG
GCGACATCTGGCGCCGGCCCTCGCCGAGTTTCTGCAGGCCTATCCCGGTGTGGATATCCAGTTGCGGCTGATCGACAGCT
TCGTCGATCTGCATGGCGAGCACCTCGGCGAGGTCGATCTGGTGCTGCGCATCGGCCCACTCGCCGATACGCGCCTGGTC
GCCACGCCCCTGGCGCCGATGGTGCGCATCGTCTGCGCCAGCCCGGCCTACCTGGAGCGTCGCGGCGTGCCGCTGACCCC
CGAGCAGTTGCCTGAACATGATGGCCTCGACTGGGATGCGCTGGCCCCGCCGCACGCCTGGCGCTTCGAACGAAACGGCC
GATCGCAGCTGTTGCGCCCGGGGCGTCTGCGGATGGTGGCCAACAATGCTGAAGCGCTGCTGACGGGAGCGCTGGCCGGG
CTCGGCATCGCCCACCTGCCGACCTGGCTGATCAGCGAGTACCTGCTGCGCGGCGAGCTGTTGCCGTTGTTCTGCGAAGG
CGGGTTGCCGCAGCCGGAAGCCAGCGGCATCTATGCCCTGCGCCTGACGCGCGAGGCCGACTCGCGGACCCGACTGCTGC
TGGAGTTTCTCAAGTCCCGCTTCGGCCCGGTCCCGCCGTGGGACCAGGCGCTCAACAGCGGTCTGAAAAGGGAGTGA

Upstream 100 bases:

>100_bases
CCAGCCTCAATGAGGCGCCCATGCTACGCCGCCGCCGCTGGCGTCGATACGCACAGCCGCGCACAATGGCTTTGCCTATT
ACGCACAAGCCGGTAACCCG

Downstream 100 bases:

>100_bases
CGGTCACAGACTCTGGCTTTCGATTTCCTGGGTGACGCCCCAGCCATCGAGTACCCCACCCAGGGGTTCGACAAGGTCCT
CAAGATCCTGCTCGAAGTCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MLPDALSAQLELFIDVLECGSFSAAARRHGLTPSAVARRVDALEAALGCQLFSRSTHAVRAMPAALAFAERARRIVQELH
LARAEATSLDSAPEGRIRIDAPAPFGRRHLAPALAEFLQAYPGVDIQLRLIDSFVDLHGEHLGEVDLVLRIGPLADTRLV
ATPLAPMVRIVCASPAYLERRGVPLTPEQLPEHDGLDWDALAPPHAWRFERNGRSQLLRPGRLRMVANNAEALLTGALAG
LGIAHLPTWLISEYLLRGELLPLFCEGGLPQPEASGIYALRLTREADSRTRLLLEFLKSRFGPVPPWDQALNSGLKRE

Sequences:

>Translated_318_residues
MLPDALSAQLELFIDVLECGSFSAAARRHGLTPSAVARRVDALEAALGCQLFSRSTHAVRAMPAALAFAERARRIVQELH
LARAEATSLDSAPEGRIRIDAPAPFGRRHLAPALAEFLQAYPGVDIQLRLIDSFVDLHGEHLGEVDLVLRIGPLADTRLV
ATPLAPMVRIVCASPAYLERRGVPLTPEQLPEHDGLDWDALAPPHAWRFERNGRSQLLRPGRLRMVANNAEALLTGALAG
LGIAHLPTWLISEYLLRGELLPLFCEGGLPQPEASGIYALRLTREADSRTRLLLEFLKSRFGPVPPWDQALNSGLKRE
>Mature_318_residues
MLPDALSAQLELFIDVLECGSFSAAARRHGLTPSAVARRVDALEAALGCQLFSRSTHAVRAMPAALAFAERARRIVQELH
LARAEATSLDSAPEGRIRIDAPAPFGRRHLAPALAEFLQAYPGVDIQLRLIDSFVDLHGEHLGEVDLVLRIGPLADTRLV
ATPLAPMVRIVCASPAYLERRGVPLTPEQLPEHDGLDWDALAPPHAWRFERNGRSQLLRPGRLRMVANNAEALLTGALAG
LGIAHLPTWLISEYLLRGELLPLFCEGGLPQPEASGIYALRLTREADSRTRLLLEFLKSRFGPVPPWDQALNSGLKRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=304, Percent_Identity=32.2368421052632, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=34.4594594594595, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=29.8305084745763, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1789639, Length=253, Percent_Identity=31.2252964426877, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI87081978, Length=303, Percent_Identity=30.03300330033, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787589, Length=244, Percent_Identity=29.5081967213115, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787128, Length=250, Percent_Identity=28, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788481, Length=267, Percent_Identity=29.2134831460674, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34809; Mature: 34809

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPDALSAQLELFIDVLECGSFSAAARRHGLTPSAVARRVDALEAALGCQLFSRSTHAVR
CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AMPAALAFAERARRIVQELHLARAEATSLDSAPEGRIRIDAPAPFGRRHLAPALAEFLQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
YPGVDIQLRLIDSFVDLHGEHLGEVDLVLRIGPLADTRLVATPLAPMVRIVCASPAYLER
CCCCCEEHHHHHHHHHHCCHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHH
RGVPLTPEQLPEHDGLDWDALAPPHAWRFERNGRSQLLRPGRLRMVANNAEALLTGALAG
CCCCCCHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCEEEEECCHHHHHHHHHHH
LGIAHLPTWLISEYLLRGELLPLFCEGGLPQPEASGIYALRLTREADSRTRLLLEFLKSR
CCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
FGPVPPWDQALNSGLKRE
CCCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MLPDALSAQLELFIDVLECGSFSAAARRHGLTPSAVARRVDALEAALGCQLFSRSTHAVR
CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AMPAALAFAERARRIVQELHLARAEATSLDSAPEGRIRIDAPAPFGRRHLAPALAEFLQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
YPGVDIQLRLIDSFVDLHGEHLGEVDLVLRIGPLADTRLVATPLAPMVRIVCASPAYLER
CCCCCEEHHHHHHHHHHCCHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHH
RGVPLTPEQLPEHDGLDWDALAPPHAWRFERNGRSQLLRPGRLRMVANNAEALLTGALAG
CCCCCCHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCEEEEECCHHHHHHHHHHH
LGIAHLPTWLISEYLLRGELLPLFCEGGLPQPEASGIYALRLTREADSRTRLLLEFLKSR
CCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
FGPVPPWDQALNSGLKRE
CCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]