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The map label for this gene is agmR [H]

Identifier: 146282635

GI number: 146282635

Start: 2496373

End: 2497038

Strand: Direct

Name: agmR [H]

Synonym: PST_2287

Alternate gene names: 146282635

Gene position: 2496373-2497038 (Clockwise)

Preceding gene: 146282634

Following gene: 146282642

Centisome position: 54.66

GC content: 61.41

Gene sequence:

>666_bases
TTGTACAAGATCCTGATTGCGGACGACCACCCGCTGTTCCGTGAAGCCATCCATAACGTCATCCGCGACGGCTTTCCCGA
CCGCGAAATCCTCGAGACTGCCGATCTCGACAGCGCGCTTGCCTTGACGCTGGAGCACGATGATCTCGATCTGGTGCTGC
TGGACCTGAACATGCCCGGCATGCACGGGCTGAACGGCCTGATCAACCTGCGCAACGAGGCGCCGACCATTCCGGTGGTG
ATCGTCTCGGCCGAGCAGGACAAGCAGATCGTGCTGCAGGCGATCACCTATGGCGCGGTCGGCTTCATCACCAAGTCTTC
GCCGCGTGCACAGATGACCGAAGCCATCGAGCAGATCCTCAATGGCAATGTCTACCTACCGTCGGACATCATTCGCAGCC
AGAAGAGCCCGAGCCGCCACTCGCACCACAGCGAGCCCTCCATCCCGCCGGAGCTGCTGCAGGCGCTGACGCGCAAGCAA
TTGCTGGTACTCGAACGCATGACCAAGGGCGAGTCGAACAAGCAGATCGCCTACAACCTGGACATCGCCGAGACTACGGT
AAAGGCCCACGTATCGGCGATCCTGCGCAAGCTCAACGTGCACAACCGGGTCCAGGCGATCCTTTCCGCCGGCGACATCG
ACTTCACCGCCTACCTGCGCCGCTGA

Upstream 100 bases:

>100_bases
TGCCGCTGCACCCGGCGACACCGGAGCCGCTGCCTGGCGACGACTGACCTACCGCGCGCGAGCACGCCCCACCATAATCA
CAACAAAGAGGTGACCGGCC

Downstream 100 bases:

>100_bases
ACACGGCGCAGGCAGCAACCAGCCCTATCGACCCGCCGCCTGCGCCCCTTCGAACCAGGCGAGCTTCTCGCGCAGCTGCA
CCACTTCGCCGACGATCAGC

Product: DNA-binding response regulator AgmR

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MYKILIADDHPLFREAIHNVIRDGFPDREILETADLDSALALTLEHDDLDLVLLDLNMPGMHGLNGLINLRNEAPTIPVV
IVSAEQDKQIVLQAITYGAVGFITKSSPRAQMTEAIEQILNGNVYLPSDIIRSQKSPSRHSHHSEPSIPPELLQALTRKQ
LLVLERMTKGESNKQIAYNLDIAETTVKAHVSAILRKLNVHNRVQAILSAGDIDFTAYLRR

Sequences:

>Translated_221_residues
MYKILIADDHPLFREAIHNVIRDGFPDREILETADLDSALALTLEHDDLDLVLLDLNMPGMHGLNGLINLRNEAPTIPVV
IVSAEQDKQIVLQAITYGAVGFITKSSPRAQMTEAIEQILNGNVYLPSDIIRSQKSPSRHSHHSEPSIPPELLQALTRKQ
LLVLERMTKGESNKQIAYNLDIAETTVKAHVSAILRKLNVHNRVQAILSAGDIDFTAYLRR
>Mature_221_residues
MYKILIADDHPLFREAIHNVIRDGFPDREILETADLDSALALTLEHDDLDLVLLDLNMPGMHGLNGLINLRNEAPTIPVV
IVSAEQDKQIVLQAITYGAVGFITKSSPRAQMTEAIEQILNGNVYLPSDIIRSQKSPSRHSHHSEPSIPPELLQALTRKQ
LLVLERMTKGESNKQIAYNLDIAETTVKAHVSAILRKLNVHNRVQAILSAGDIDFTAYLRR

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=208, Percent_Identity=34.1346153846154, Blast_Score=107, Evalue=4e-25,
Organism=Escherichia coli, GI1786747, Length=204, Percent_Identity=27.4509803921569, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788222, Length=205, Percent_Identity=23.9024390243902, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788712, Length=194, Percent_Identity=28.3505154639175, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787473, Length=207, Percent_Identity=31.4009661835749, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1790102, Length=207, Percent_Identity=27.0531400966184, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789937, Length=206, Percent_Identity=24.7572815533981, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24649; Mature: 24649

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKILIADDHPLFREAIHNVIRDGFPDREILETADLDSALALTLEHDDLDLVLLDLNMPG
CEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCC
MHGLNGLINLRNEAPTIPVVIVSAEQDKQIVLQAITYGAVGFITKSSPRAQMTEAIEQIL
CCCCCHHEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHH
NGNVYLPSDIIRSQKSPSRHSHHSEPSIPPELLQALTRKQLLVLERMTKGESNKQIAYNL
CCCEEECHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
DIAETTVKAHVSAILRKLNVHNRVQAILSAGDIDFTAYLRR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
>Mature Secondary Structure
MYKILIADDHPLFREAIHNVIRDGFPDREILETADLDSALALTLEHDDLDLVLLDLNMPG
CEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCC
MHGLNGLINLRNEAPTIPVVIVSAEQDKQIVLQAITYGAVGFITKSSPRAQMTEAIEQIL
CCCCCHHEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHH
NGNVYLPSDIIRSQKSPSRHSHHSEPSIPPELLQALTRKQLLVLERMTKGESNKQIAYNL
CCCEEECHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
DIAETTVKAHVSAILRKLNVHNRVQAILSAGDIDFTAYLRR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]