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The map label for this gene is yjcF [C]

Identifier: 146282620

GI number: 146282620

Start: 2480273

End: 2480926

Strand: Direct

Name: yjcF [C]

Synonym: PST_2272

Alternate gene names: 146282620

Gene position: 2480273-2480926 (Clockwise)

Preceding gene: 146282619

Following gene: 146282621

Centisome position: 54.3

GC content: 65.75

Gene sequence:

>654_bases
ATGAACACCCCTTGCCGTTTGCTTCTGCCACTGGCGCTGTTCAGCAGCGCCGCGGTCTTCGCCGCGGATGACGGCCCCTT
GACCGTCAACGGCTGCGTGCTACAGCCCGACAGCCAATGCGCCAACGCCGACCTGCGCGGCGCCGACCTCAGCAATCAGG
ACCTGCGCCGGATCAACCTCGCTGGCGCCAACCTCTCCGGCGCCAACCTGCGCCACGCCAACCTCGACCTGGCCAATCTG
GAAAAGGCCGACCTCACCGGCGCCACGCTTAATCGCGCCAGCCTGCAACAGGCCAACCTGCGCCTGGCCAATTTCACCGA
GGCCAGGCTGATCGCCATCCAGGGCTGGGGCTTGTTCGCCCAGGCCACGCAGTTCAAGGGGGCCGACCTCACCGGCGCCT
ACCTGGAGTTCGCGCGCATGAGCGGCGCGAAGCTGCATGGCAGCACCCTGCGCGCTGCCGACCTGGAGATGACCTGGTTG
AGCAAGGCCGACCTCATGGGGGCGGACCTCACCGACGCCAATCTGCAGGAAGCCAAGCTCAACGATGCCAACCTGGCGGA
TGCCGTACTGACCGGTGCTCGCCGCCATTACGCGACCTTTCAGGGCACCAATATGGAAGGCTGCAAGGACTGCCCGCATG
ACTGGGAAAAGTGA

Upstream 100 bases:

>100_bases
GCGCGGCATGCCTGGCCTCGCCGGCTCCGGGTTGGCGCTCTCGCCGACAGGCCAGAAACGCCACGCGACCGCTTTTCATT
TCCTGCCTCAGGTGACGCCC

Downstream 100 bases:

>100_bases
TGCACCGCCATGCCCGTTCGATTGAGGGGCTCAATCGGAGGGATAGAACGAAGGGTGGCCACTGCGCCTCAGGAAAACTA
GAACGGCGCCGATGCAGTGA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNTPCRLLLPLALFSSAAVFAADDGPLTVNGCVLQPDSQCANADLRGADLSNQDLRRINLAGANLSGANLRHANLDLANL
EKADLTGATLNRASLQQANLRLANFTEARLIAIQGWGLFAQATQFKGADLTGAYLEFARMSGAKLHGSTLRAADLEMTWL
SKADLMGADLTDANLQEAKLNDANLADAVLTGARRHYATFQGTNMEGCKDCPHDWEK

Sequences:

>Translated_217_residues
MNTPCRLLLPLALFSSAAVFAADDGPLTVNGCVLQPDSQCANADLRGADLSNQDLRRINLAGANLSGANLRHANLDLANL
EKADLTGATLNRASLQQANLRLANFTEARLIAIQGWGLFAQATQFKGADLTGAYLEFARMSGAKLHGSTLRAADLEMTWL
SKADLMGADLTDANLQEAKLNDANLADAVLTGARRHYATFQGTNMEGCKDCPHDWEK
>Mature_217_residues
MNTPCRLLLPLALFSSAAVFAADDGPLTVNGCVLQPDSQCANADLRGADLSNQDLRRINLAGANLSGANLRHANLDLANL
EKADLTGATLNRASLQQANLRLANFTEARLIAIQGWGLFAQATQFKGADLTGAYLEFARMSGAKLHGSTLRAADLEMTWL
SKADLMGADLTDANLQEAKLNDANLADAVLTGARRHYATFQGTNMEGCKDCPHDWEK

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=155, Percent_Identity=40, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI221377802, Length=180, Percent_Identity=37.2222222222222, Blast_Score=81, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 23215; Mature: 23215

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPCRLLLPLALFSSAAVFAADDGPLTVNGCVLQPDSQCANADLRGADLSNQDLRRINL
CCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE
AGANLSGANLRHANLDLANLEKADLTGATLNRASLQQANLRLANFTEARLIAIQGWGLFA
ECCCCCCCCEEECCCCHHCCCCCCCCCCCCCHHHHHHHCEEEECCCCEEEEEEECCCCEE
QATQFKGADLTGAYLEFARMSGAKLHGSTLRAADLEMTWLSKADLMGADLTDANLQEAKL
EHHCCCCCCCCHHHHHHHHHCCCEECCCEEEECCCEEEECCCCCCCCCCCCCCCCHHHCC
NDANLADAVLTGARRHYATFQGTNMEGCKDCPHDWEK
CCCHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNTPCRLLLPLALFSSAAVFAADDGPLTVNGCVLQPDSQCANADLRGADLSNQDLRRINL
CCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE
AGANLSGANLRHANLDLANLEKADLTGATLNRASLQQANLRLANFTEARLIAIQGWGLFA
ECCCCCCCCEEECCCCHHCCCCCCCCCCCCCHHHHHHHCEEEECCCCEEEEEEECCCCEE
QATQFKGADLTGAYLEFARMSGAKLHGSTLRAADLEMTWLSKADLMGADLTDANLQEAKL
EHHCCCCCCCCHHHHHHHHHCCCEECCCEEEECCCEEEECCCCCCCCCCCCCCCCHHHCC
NDANLADAVLTGARRHYATFQGTNMEGCKDCPHDWEK
CCCHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA