| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
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The map label for this gene is yejA [H]
Identifier: 146282605
GI number: 146282605
Start: 2461061
End: 2462890
Strand: Direct
Name: yejA [H]
Synonym: PST_2256
Alternate gene names: 146282605
Gene position: 2461061-2462890 (Clockwise)
Preceding gene: 146282603
Following gene: 146282606
Centisome position: 53.88
GC content: 63.17
Gene sequence:
>1830_bases ATGCGAGCCCTGCTACTGTTACTGACCTGTCTGGCCTTGAGCTTTCCCGCCCTCGCCACCATCAGCGAAAGCCATGGTTA TGCGCAGTTCGGCACTCTTAAGTACCCAGCCTCCTTTACCCATTTCGACTGGGTGAACCCGCGCGCGCCCAAGGGCGGCC GGATCAAGCTGATGGCGTCAGGCACCTTCGACACGCTCAACCCCTACACCTTCAAAGGCACCAGCCCGAGCGCCTCGCCC GGTTTCCTGCAGTACGGCATCAGTGAGCTCAACGAACCGCTGATGGTCGGCACCGGACTGTACGACCCATCCGGCGACGA ACCCGCGTCCAGTTATGGACTGATTGCCGAATCGGTGGAGTACAGCGACAACAACAGCTGGGTGGTATTCAACCTGCGCA AGGAAGCCCGCTTCCATGACGGCAAGCCCATCACCGCATACGACGTCGCCTTCTCCTACCGCCTCCTGATCAAGGACGGC CACCCGCAGTACCGCACCAACCTGCAGGGCGTGAAGCGCGTCGACATCCTCAACCGCCACCGCATCCGCTTCGTCTTCGA GCAGCCGAACAATCCGCTGCTCATCATGCGCCTCGGCGAACTCCCGGTGCTGCCGCAGCACTACTGGAAGAATCGCGACT TCAAGGCCACCACCTTCGAGCCGCCGCTGGGCAGCGGTCCCTACCGCATCACGCAGGTGCAACCCGGGCGCCAGGTGGTG TTCGAACGCGTGCGCGACTGGTGGGGGGCGAAGCTGCCAGTCAACCAGGGCAAGTACAACTTCAACCGCGTCGAGGTCGA GTTCTACCGCGACAACGTGGTGGCGTTCGAAGCGTTCAAGGTCGGTGAATTCGACTTCTACATCGAGCACCAGGCCAAGA ACTGGGCCAACGGCTATCAATTCCCGGCCATGCTGCGGGGCGACATCATCCGCGCGGAGATTCCGCATCAGATTCCGACC CAAACCCAGGCGCTGTTCATGAACGGGCGCCGCGCGACGTTCGCCGACCAGCGCGTGCGCGAGGCCCTCGGCCTGATGTT CGATTTCGAGTGGACCAACCGCGCACTGTTCTATGGCGCCTATCGCCGCAGCGAAAGCTACTACCCCAACAGCGAGTTCA GCGCCACCGGCAAGCCCGAAGGCGGTGAGTGGCTGCTGCTTTCACCCTATCGCAAGCAGCTTCCGGCCAAGCTGTTCAGC GAGCCGTTCCAACTGCCGCAAACCGATGGCCGCGGCATCCCGCGGGATACCCTGCGCCGTGCCCTGGGCCTGCTCGCCGA AGCGGGCTGGAAACCCTCCGATGCCGGCCTGTTGAACAGCGCCGGGCAACCGCTGCGGTTCGAGATACTGCTGGTCAATC CGCGGCTGGAGCGCATTCTCCAGCCTTATGTGGAGAATCTCGCGCGCATCGGCATCCAGGCCAACCTGCGCACCGTTGAC GGCGCGCAGTACAAGCAGCGGCTGGACCACTACGATTACGACATGATCCTGATGACGCTGGTGCAGAGCCTGAGCCCCGG GATCGAGCAGCGCCTGTACTTCCATTCCAGCCAGGTGGACGTCAAGGGTGGACGCAACTATGCCGGCGTCGCCAACCCCA TCGTCGACGACCTGATCGGCAAGCTGCTCGCCGCGCAGACCCGCGACGAGCAGGTCGCAGCCGCCCGCGCCATCGACCGG GTGCTGCTGTGGAACCACTACACCATTCCGAACTGGTTCATCAGTAACCATCGCCTGGCGTACCGAAATCGGTTCGCCCA CGTCACCACGCCGCCCTACACGCTGGGTCTGCGCGCCTGGTGGCTGAAGAGCCTGGAGAAGAGCAAATGA
Upstream 100 bases:
>100_bases GCAGTTTGCCCGAGGTGACCGGCCTTTTTCCAGCGCATACAAGCTGTTACTGTACCGGCCCGAGAAGCCCGTAAGCGCCA AGGATCGGATCCCCCGTCTG
Downstream 100 bases:
>100_bases ACAATCGCGTGCGCCATTCGCTGTTTCGCGCCGGCCTGCTGAGTCTGCTCTGCATGGCAACCCTGGCCGAGGCCGCCCCC CGCCATGCCCTGACGCTGTA
Product: ABC transporter, periplasmic substrate-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 609; Mature: 609
Protein sequence:
>609_residues MRALLLLLTCLALSFPALATISESHGYAQFGTLKYPASFTHFDWVNPRAPKGGRIKLMASGTFDTLNPYTFKGTSPSASP GFLQYGISELNEPLMVGTGLYDPSGDEPASSYGLIAESVEYSDNNSWVVFNLRKEARFHDGKPITAYDVAFSYRLLIKDG HPQYRTNLQGVKRVDILNRHRIRFVFEQPNNPLLIMRLGELPVLPQHYWKNRDFKATTFEPPLGSGPYRITQVQPGRQVV FERVRDWWGAKLPVNQGKYNFNRVEVEFYRDNVVAFEAFKVGEFDFYIEHQAKNWANGYQFPAMLRGDIIRAEIPHQIPT QTQALFMNGRRATFADQRVREALGLMFDFEWTNRALFYGAYRRSESYYPNSEFSATGKPEGGEWLLLSPYRKQLPAKLFS EPFQLPQTDGRGIPRDTLRRALGLLAEAGWKPSDAGLLNSAGQPLRFEILLVNPRLERILQPYVENLARIGIQANLRTVD GAQYKQRLDHYDYDMILMTLVQSLSPGIEQRLYFHSSQVDVKGGRNYAGVANPIVDDLIGKLLAAQTRDEQVAAARAIDR VLLWNHYTIPNWFISNHRLAYRNRFAHVTTPPYTLGLRAWWLKSLEKSK
Sequences:
>Translated_609_residues MRALLLLLTCLALSFPALATISESHGYAQFGTLKYPASFTHFDWVNPRAPKGGRIKLMASGTFDTLNPYTFKGTSPSASP GFLQYGISELNEPLMVGTGLYDPSGDEPASSYGLIAESVEYSDNNSWVVFNLRKEARFHDGKPITAYDVAFSYRLLIKDG HPQYRTNLQGVKRVDILNRHRIRFVFEQPNNPLLIMRLGELPVLPQHYWKNRDFKATTFEPPLGSGPYRITQVQPGRQVV FERVRDWWGAKLPVNQGKYNFNRVEVEFYRDNVVAFEAFKVGEFDFYIEHQAKNWANGYQFPAMLRGDIIRAEIPHQIPT QTQALFMNGRRATFADQRVREALGLMFDFEWTNRALFYGAYRRSESYYPNSEFSATGKPEGGEWLLLSPYRKQLPAKLFS EPFQLPQTDGRGIPRDTLRRALGLLAEAGWKPSDAGLLNSAGQPLRFEILLVNPRLERILQPYVENLARIGIQANLRTVD GAQYKQRLDHYDYDMILMTLVQSLSPGIEQRLYFHSSQVDVKGGRNYAGVANPIVDDLIGKLLAAQTRDEQVAAARAIDR VLLWNHYTIPNWFISNHRLAYRNRFAHVTTPPYTLGLRAWWLKSLEKSK >Mature_609_residues MRALLLLLTCLALSFPALATISESHGYAQFGTLKYPASFTHFDWVNPRAPKGGRIKLMASGTFDTLNPYTFKGTSPSASP GFLQYGISELNEPLMVGTGLYDPSGDEPASSYGLIAESVEYSDNNSWVVFNLRKEARFHDGKPITAYDVAFSYRLLIKDG HPQYRTNLQGVKRVDILNRHRIRFVFEQPNNPLLIMRLGELPVLPQHYWKNRDFKATTFEPPLGSGPYRITQVQPGRQVV FERVRDWWGAKLPVNQGKYNFNRVEVEFYRDNVVAFEAFKVGEFDFYIEHQAKNWANGYQFPAMLRGDIIRAEIPHQIPT QTQALFMNGRRATFADQRVREALGLMFDFEWTNRALFYGAYRRSESYYPNSEFSATGKPEGGEWLLLSPYRKQLPAKLFS EPFQLPQTDGRGIPRDTLRRALGLLAEAGWKPSDAGLLNSAGQPLRFEILLVNPRLERILQPYVENLARIGIQANLRTVD GAQYKQRLDHYDYDMILMTLVQSLSPGIEQRLYFHSSQVDVKGGRNYAGVANPIVDDLIGKLLAAQTRDEQVAAARAIDR VLLWNHYTIPNWFISNHRLAYRNRFAHVTTPPYTLGLRAWWLKSLEKSK
Specific function: Unknown
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae hbpA [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=604, Percent_Identity=39.5695364238411, Blast_Score=436, Evalue=1e-123,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 69647; Mature: 69647
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRALLLLLTCLALSFPALATISESHGYAQFGTLKYPASFTHFDWVNPRAPKGGRIKLMAS CHHHHHHHHHHHHCCCHHEEECCCCCCEEECEEECCCCCCCCCCCCCCCCCCCEEEEEEC GTFDTLNPYTFKGTSPSASPGFLQYGISELNEPLMVGTGLYDPSGDEPASSYGLIAESVE CCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEEEE YSDNNSWVVFNLRKEARFHDGKPITAYDVAFSYRLLIKDGHPQYRTNLQGVKRVDILNRH ECCCCCEEEEEEHHCCCCCCCCCEEEEEEEEEEEEEEECCCCHHHHCCCHHHHHHHHCCC RIRFVFEQPNNPLLIMRLGELPVLPQHYWKNRDFKATTFEPPLGSGPYRITQVQPGRQVV EEEEEEECCCCCEEEEEECCCCCCCHHHHCCCCCEEEECCCCCCCCCEEEEEECCCHHHH FERVRDWWGAKLPVNQGKYNFNRVEVEFYRDNVVAFEAFKVGEFDFYIEHQAKNWANGYQ HHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCEEEEEEECCCCCCCCCC FPAMLRGDIIRAEIPHQIPTQTQALFMNGRRATFADQRVREALGLMFDFEWTNRALFYGA CCHHHCCCEEEECCCCCCCCCCHHEEECCCCCHHHHHHHHHHHCCEEEEECCCCEEEEEE YRRSESYYPNSEFSATGKPEGGEWLLLSPYRKQLPAKLFSEPFQLPQTDGRGIPRDTLRR HHCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHH ALGLLAEAGWKPSDAGLLNSAGQPLRFEILLVNPRLERILQPYVENLARIGIQANLRTVD HHHHHHHCCCCCCCCCHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECC GAQYKQRLDHYDYDMILMTLVQSLSPGIEQRLYFHSSQVDVKGGRNYAGVANPIVDDLIG CHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHEEECCEEEECCCCCCCCCCHHHHHHHHH KLLAAQTRDEQVAAARAIDRVLLWNHYTIPNWFISNHRLAYRNRFAHVTTPPYTLGLRAW HHHHHCCCCHHHHHHHHHHHHHEECCCCCCCEEECCCEEEECCCEEEECCCCHHHHHHHH WLKSLEKSK HHHHHHCCC >Mature Secondary Structure MRALLLLLTCLALSFPALATISESHGYAQFGTLKYPASFTHFDWVNPRAPKGGRIKLMAS CHHHHHHHHHHHHCCCHHEEECCCCCCEEECEEECCCCCCCCCCCCCCCCCCCEEEEEEC GTFDTLNPYTFKGTSPSASPGFLQYGISELNEPLMVGTGLYDPSGDEPASSYGLIAESVE CCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEEEE YSDNNSWVVFNLRKEARFHDGKPITAYDVAFSYRLLIKDGHPQYRTNLQGVKRVDILNRH ECCCCCEEEEEEHHCCCCCCCCCEEEEEEEEEEEEEEECCCCHHHHCCCHHHHHHHHCCC RIRFVFEQPNNPLLIMRLGELPVLPQHYWKNRDFKATTFEPPLGSGPYRITQVQPGRQVV EEEEEEECCCCCEEEEEECCCCCCCHHHHCCCCCEEEECCCCCCCCCEEEEEECCCHHHH FERVRDWWGAKLPVNQGKYNFNRVEVEFYRDNVVAFEAFKVGEFDFYIEHQAKNWANGYQ HHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCEEEEEEECCCCCCCCCC FPAMLRGDIIRAEIPHQIPTQTQALFMNGRRATFADQRVREALGLMFDFEWTNRALFYGA CCHHHCCCEEEECCCCCCCCCCHHEEECCCCCHHHHHHHHHHHCCEEEEECCCCEEEEEE YRRSESYYPNSEFSATGKPEGGEWLLLSPYRKQLPAKLFSEPFQLPQTDGRGIPRDTLRR HHCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHH ALGLLAEAGWKPSDAGLLNSAGQPLRFEILLVNPRLERILQPYVENLARIGIQANLRTVD HHHHHHHCCCCCCCCCHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECC GAQYKQRLDHYDYDMILMTLVQSLSPGIEQRLYFHSSQVDVKGGRNYAGVANPIVDDLIG CHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHEEECCEEEECCCCCCCCCCHHHHHHHHH KLLAAQTRDEQVAAARAIDRVLLWNHYTIPNWFISNHRLAYRNRFAHVTTPPYTLGLRAW HHHHHCCCCHHHHHHHHHHHHHEECCCCCCCEEECCCEEEECCCEEEECCCCHHHHHHHH WLKSLEKSK HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 9097040 [H]