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The map label for this gene is rarD [C]

Identifier: 145301003

GI number: 145301003

Start: 4448288

End: 4449190

Strand: Direct

Name: rarD [C]

Synonym: ASA_4157

Alternate gene names: 145301003

Gene position: 4448288-4449190 (Clockwise)

Preceding gene: 145301002

Following gene: 145301004

Centisome position: 94.6

GC content: 61.68

Gene sequence:

>903_bases
ATGCAGCAACAAGTTCAGCGTCAGGGCATCATCTATGCCTTGTGCGCCTATACCCTTTGGGGTCTCGCCCCCATCTATTT
CAAAACCCTCTCCGCCGTACCGGCCGCCGAAATCCTGACCCACCGCATGATCTGGTCCTGCGTTCTGCTGATGGTGCTGA
CCCTGCTCGGGCGCCAGTGGCACAAGGTGCAGGCCGTGCTGCGTCAGCCAAAAGTGCTGCTGACCCTGGCCTTCACTTCG
GTCACGGTCGGCGGCAACTGGCTGCTCTTTATCTGGGCCATCAACAACGGCCACATGCTGGATGCGAGCCTCGGCTACTA
CATCAATCCGCTGTTCAACGTGCTGCTCGGCATGCTGTTCCTGAGTGAACAGCTGCGTCGCCTGCAGTGGTGGGCCGTGG
GACTGGCGGTGATCGGTGTTACCGTCCAGCTCATCGCCTTCGGCTCCCTGCCCTGGATAGCCCTGGTACTGGCCTCGAGC
TTTGCCATCTACGGCCTCATTCGCAAGAAGCTGGCCCTCGATGCCCTCACCGGCCTGCTGATCGAAACCATGATCATGCT
GCCGCCAGCCGCCATCTACCTGTGGGGATTTGCCGACAGCCCCACCAGCCATATGACAGAGAACGACTGGCACCTCAACC
TGCTGCTGATCGCCGCCGGAGCCGTCACCACGGCGCCCCTGCTCTGCTTCACCGCAGCTGCCACCCGCCTCAAGCTCTCC
ACCCTGGGTTTCTTCCAGTACATAGGCCCCAGCCTGATGTTCATACTGGCGGTGACTTTGTACGGGGAAGCGCTGACACC
GGACAAGCTGATCACCTTCGGCTGCATCTGGAGTGCGCTTGTGCTGTTCAGCCTGGACGGACTGCGCAGCGGCAAGCGGC
GCCGGGCTGCCAGTCAGGGTTGA

Upstream 100 bases:

>100_bases
GCCGATCACCATTTATTCACTTCTTTCCCTCCAAAAGGATCGCTACACTGATTTTTTGCGATGTTTTCCAACGTCCGACT
CTCCAGTGAAGGTTATCCGC

Downstream 100 bases:

>100_bases
CGGCATGGCCGCGTCGACACTGCAATAATCTACAAGCCAATATTCGGGTTTCAGGTTATCAATAGCCGATGAGCGCTCCC
CAATCCCGCATCCACTACTG

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MQQQVQRQGIIYALCAYTLWGLAPIYFKTLSAVPAAEILTHRMIWSCVLLMVLTLLGRQWHKVQAVLRQPKVLLTLAFTS
VTVGGNWLLFIWAINNGHMLDASLGYYINPLFNVLLGMLFLSEQLRRLQWWAVGLAVIGVTVQLIAFGSLPWIALVLASS
FAIYGLIRKKLALDALTGLLIETMIMLPPAAIYLWGFADSPTSHMTENDWHLNLLLIAAGAVTTAPLLCFTAAATRLKLS
TLGFFQYIGPSLMFILAVTLYGEALTPDKLITFGCIWSALVLFSLDGLRSGKRRRAASQG

Sequences:

>Translated_300_residues
MQQQVQRQGIIYALCAYTLWGLAPIYFKTLSAVPAAEILTHRMIWSCVLLMVLTLLGRQWHKVQAVLRQPKVLLTLAFTS
VTVGGNWLLFIWAINNGHMLDASLGYYINPLFNVLLGMLFLSEQLRRLQWWAVGLAVIGVTVQLIAFGSLPWIALVLASS
FAIYGLIRKKLALDALTGLLIETMIMLPPAAIYLWGFADSPTSHMTENDWHLNLLLIAAGAVTTAPLLCFTAAATRLKLS
TLGFFQYIGPSLMFILAVTLYGEALTPDKLITFGCIWSALVLFSLDGLRSGKRRRAASQG
>Mature_300_residues
MQQQVQRQGIIYALCAYTLWGLAPIYFKTLSAVPAAEILTHRMIWSCVLLMVLTLLGRQWHKVQAVLRQPKVLLTLAFTS
VTVGGNWLLFIWAINNGHMLDASLGYYINPLFNVLLGMLFLSEQLRRLQWWAVGLAVIGVTVQLIAFGSLPWIALVLASS
FAIYGLIRKKLALDALTGLLIETMIMLPPAAIYLWGFADSPTSHMTENDWHLNLLLIAAGAVTTAPLLCFTAAATRLKLS
TLGFFQYIGPSLMFILAVTLYGEALTPDKLITFGCIWSALVLFSLDGLRSGKRRRAASQG

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=293, Percent_Identity=61.4334470989761, Blast_Score=364, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33157; Mature: 33157

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQQVQRQGIIYALCAYTLWGLAPIYFKTLSAVPAAEILTHRMIWSCVLLMVLTLLGRQW
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
HKVQAVLRQPKVLLTLAFTSVTVGGNWLLFIWAINNGHMLDASLGYYINPLFNVLLGMLF
HHHHHHHHCCCEEEEEEEHHEEECCCEEEEEEEECCCEEEECCCCHHHHHHHHHHHHHHH
LSEQLRRLQWWAVGLAVIGVTVQLIAFGSLPWIALVLASSFAIYGLIRKKLALDALTGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IETMIMLPPAAIYLWGFADSPTSHMTENDWHLNLLLIAAGAVTTAPLLCFTAAATRLKLS
HHHHHHCCCHHEEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHH
TLGFFQYIGPSLMFILAVTLYGEALTPDKLITFGCIWSALVLFSLDGLRSGKRRRAASQG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
>Mature Secondary Structure
MQQQVQRQGIIYALCAYTLWGLAPIYFKTLSAVPAAEILTHRMIWSCVLLMVLTLLGRQW
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
HKVQAVLRQPKVLLTLAFTSVTVGGNWLLFIWAINNGHMLDASLGYYINPLFNVLLGMLF
HHHHHHHHCCCEEEEEEEHHEEECCCEEEEEEEECCCEEEECCCCHHHHHHHHHHHHHHH
LSEQLRRLQWWAVGLAVIGVTVQLIAFGSLPWIALVLASSFAIYGLIRKKLALDALTGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IETMIMLPPAAIYLWGFADSPTSHMTENDWHLNLLLIAAGAVTTAPLLCFTAAATRLKLS
HHHHHHCCCHHEEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHH
TLGFFQYIGPSLMFILAVTLYGEALTPDKLITFGCIWSALVLFSLDGLRSGKRRRAASQG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]