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The map label for this gene is ybfI [H]

Identifier: 145301004

GI number: 145301004

Start: 4449259

End: 4450077

Strand: Direct

Name: ybfI [H]

Synonym: ASA_4158

Alternate gene names: 145301004

Gene position: 4449259-4450077 (Clockwise)

Preceding gene: 145301003

Following gene: 145301005

Centisome position: 94.62

GC content: 64.84

Gene sequence:

>819_bases
ATGAGCGCTCCCCAATCCCGCATCCACTACTGGCAATCCCGGCTGCTGCCGGGGGTTGAACTCTCCCACTCCCACCACAG
GGAGTTCAGCTATGGCCGCCACGTTCACCTGGACTATCACATAGGTCTGGTGCAGCAGGGCGGCCAGAAATTCATCCACA
AGGGCAGCAGCCACAATCTGGTGCGCGGCGAGCTCTCCACCGTCAACCCGGACGAGATGCACGACGGCCTCAGCCTGCTG
CCGGAAGGGTACGAGGTGCGGGTGTTTGCCATCGCACCCGAACAGCTGGCGCGCTGGCTGCCGGACAGCCCCGAACCTTT
CTTCGACAAGGGCTTACAGAGCCGTCCCGACCTCTATCAGGGCTTCGCCCGGCTGCACATGTACCTGGACACGCCCCAGG
CGGACGGCCTGCTGGCGGAGAGTCAGCTGCTGGCCCTGCTCGGCGAGCTGCTGCACATAGCGCCGGAGCGCCACGCCCTG
GCGGACCCCCAACTCAGATACCTGCGCGACTATCTGCTGGCCCGACTGGATGAGCGCCACAGCCTGGAGGATCTGGCCGC
CCTGTTCGGGCTGGATCGCTTCGCCTTCCTGCGTCAGTTCAAGAAAAAGACAGGCATGACCCCCTATGCCTGGCTCAAGC
GACTGAGACTGGAGCAGGGCAAGCGCCTGCTCGGCAGCGGCCTGCCGGTGAGCGAGGTGGCGCTGGCGGTCGGCTTCTTC
GATCAGAGCCACTTCCACCACGGTTTCCGGCAGGCATTCGGGCTGACTCCCGCCGATTACCGCCAACAGATGCAGTCTTT
TACGGGCCAGCCCGGCTAG

Upstream 100 bases:

>100_bases
GCAAGCGGCGCCGGGCTGCCAGTCAGGGTTGACGGCATGGCCGCGTCGACACTGCAATAATCTACAAGCCAATATTCGGG
TTTCAGGTTATCAATAGCCG

Downstream 100 bases:

>100_bases
CCAGGGCCATGACAGCCCAGCCCGGTCGATGACCGGCAGCAGATGCAATCTTTTACAATCGCCTCCCCGCCCTGATCCCC
CATGCTGTCACCTCATACCG

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MSAPQSRIHYWQSRLLPGVELSHSHHREFSYGRHVHLDYHIGLVQQGGQKFIHKGSSHNLVRGELSTVNPDEMHDGLSLL
PEGYEVRVFAIAPEQLARWLPDSPEPFFDKGLQSRPDLYQGFARLHMYLDTPQADGLLAESQLLALLGELLHIAPERHAL
ADPQLRYLRDYLLARLDERHSLEDLAALFGLDRFAFLRQFKKKTGMTPYAWLKRLRLEQGKRLLGSGLPVSEVALAVGFF
DQSHFHHGFRQAFGLTPADYRQQMQSFTGQPG

Sequences:

>Translated_272_residues
MSAPQSRIHYWQSRLLPGVELSHSHHREFSYGRHVHLDYHIGLVQQGGQKFIHKGSSHNLVRGELSTVNPDEMHDGLSLL
PEGYEVRVFAIAPEQLARWLPDSPEPFFDKGLQSRPDLYQGFARLHMYLDTPQADGLLAESQLLALLGELLHIAPERHAL
ADPQLRYLRDYLLARLDERHSLEDLAALFGLDRFAFLRQFKKKTGMTPYAWLKRLRLEQGKRLLGSGLPVSEVALAVGFF
DQSHFHHGFRQAFGLTPADYRQQMQSFTGQPG
>Mature_271_residues
SAPQSRIHYWQSRLLPGVELSHSHHREFSYGRHVHLDYHIGLVQQGGQKFIHKGSSHNLVRGELSTVNPDEMHDGLSLLP
EGYEVRVFAIAPEQLARWLPDSPEPFFDKGLQSRPDLYQGFARLHMYLDTPQADGLLAESQLLALLGELLHIAPERHALA
DPQLRYLRDYLLARLDERHSLEDLAALFGLDRFAFLRQFKKKTGMTPYAWLKRLRLEQGKRLLGSGLPVSEVALAVGFFD
QSHFHHGFRQAFGLTPADYRQQMQSFTGQPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=86, Percent_Identity=34.8837209302326, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31067; Mature: 30936

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPQSRIHYWQSRLLPGVELSHSHHREFSYGRHVHLDYHIGLVQQGGQKFIHKGSSHNL
CCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCEEEEEEEEHHHHHCCHHHHHCCCCCCE
VRGELSTVNPDEMHDGLSLLPEGYEVRVFAIAPEQLARWLPDSPEPFFDKGLQSRPDLYQ
EECCCCCCCHHHHHCCHHHCCCCCEEEEEEECHHHHHHHCCCCCCHHHHHCCCCCCHHHH
GFARLHMYLDTPQADGLLAESQLLALLGELLHIAPERHALADPQLRYLRDYLLARLDERH
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHC
SLEDLAALFGLDRFAFLRQFKKKTGMTPYAWLKRLRLEQGKRLLGSGLPVSEVALAVGFF
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
DQSHFHHGFRQAFGLTPADYRQQMQSFTGQPG
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SAPQSRIHYWQSRLLPGVELSHSHHREFSYGRHVHLDYHIGLVQQGGQKFIHKGSSHNL
CCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCEEEEEEEEHHHHHCCHHHHHCCCCCCE
VRGELSTVNPDEMHDGLSLLPEGYEVRVFAIAPEQLARWLPDSPEPFFDKGLQSRPDLYQ
EECCCCCCCHHHHHCCHHHCCCCCEEEEEEECHHHHHHHCCCCCCHHHHHCCCCCCHHHH
GFARLHMYLDTPQADGLLAESQLLALLGELLHIAPERHALADPQLRYLRDYLLARLDERH
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHC
SLEDLAALFGLDRFAFLRQFKKKTGMTPYAWLKRLRLEQGKRLLGSGLPVSEVALAVGFF
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
DQSHFHHGFRQAFGLTPADYRQQMQSFTGQPG
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]