| Definition | Aeromonas salmonicida subsp. salmonicida A449, complete genome. |
|---|---|
| Accession | NC_009348 |
| Length | 4,702,402 |
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The map label for this gene is recG [H]
Identifier: 145300961
GI number: 145300961
Start: 4402485
End: 4404557
Strand: Direct
Name: recG [H]
Synonym: ASA_4113
Alternate gene names: 145300961
Gene position: 4402485-4404557 (Clockwise)
Preceding gene: 145300960
Following gene: 145300962
Centisome position: 93.62
GC content: 65.03
Gene sequence:
>2073_bases TTGATGAAATTGGATAAAATCTCCCTCGACAGCCTCAAGGGCGTCGGCAGCAAGATGCAGGAAAAACTCGAGCGACTGGG GCTGGCCACGGTACAGGATCTGCTGTTCCACCTCCCCCTTCGTTACGAGGATCGTACCCAGGTGTGGCCCATCGGCGATC TGCCGCCCGGGCTGCACGGCGCCGTCGAGGGCGAAATCCAGGACACTCAATTGGTGATGGGGCGCCGCCGCATGCTGGTC TGCCGCATCAGTGACGGCACCGGTACTCTGACCCTTCGCTTCTTCAACTTCACCGCAGCCCAGAAAAACAGCCTGGGGCA GGGCAGGTTGATCCGCTGCTTCGGCGAGGTGCGCCCCGGCAAATACGGGCTCGAGATGGCCCACCCCGAGTACAAGCTGC TCGGTGAAGAACAGGCAGGTCAGACCGAAGAGGCACTCACCCCCGTTTACCCCACCACGGAAGGGCTGCGCCAGCTCACC CTGCGTAGCCTCACCGATCAGGCGCTGGCTCAACTCGACCTGTACGGGGTGGAGGAGCTGCTGCCTGCAGGCCTCTATCC CCAGCAGATCGATCTGGCCGCCGCCCTGCGCCTGCTCCATCGCCCGCCCCCCTCGGTGGCGCTGGCCTTGCTGGAGAGCG GCCAGCACCCGGCCCAGCAACGACTGGTGCTGGAAGAGCTGCTGGCCCATAACCTGTCGGTGCTCAAAGTGCGTGCCCAG GCGCAAACCCAGCTGGCGCGCGCCCTCAAGCCGGCACCTGCCCTGGTCAAGCAATTGCTGGAAGCGCTGCCGTTCAAACC GACCGGTGCCCAGAATCGGGTGGTAGCCGAGATCAACCAGGACCTGCAACGCAGCTACCCCATGATGCGCCTGGTGCAGG GGGACGTGGGCTCCGGCAAGACGCTGGTTGCGGCGCTGGCAGCCCTCCAGGCCATCGGCAACGGCTGCCAGGTGGGGCTG ATGGCACCGACCGAGTTGCTGGCCGAACAGCATGCCATCAACTTCGCCAACTGGCTGGAGCCGCTCGGTATCGGGGTCGG CTGGCTGGCGGGCAAGCAGAAAGGGAAGGCGCGGGAAACCCAGCTCGCCGCCATCGCCGATGGCAGCGTCAAGATGGTGG TGGGCACCCACGCCATCTTCCAGGAGCAGGTGGTGTTCCAACGCCTCGCGCTGGTCATCATCGATGAACAGCACAGATTC GGGGTGCATCAGCGCCTCGCGCTGCGGGAAAAAGGGGAGCGGGAGGGAGTCCATCCCCATCAGCTCATCATGACTGCCAC TCCCATACCCCGCACCCTGGCGATGACCGCCTATGCCGATCTCGACACCTCCGTCATCGACGAGCTGCCACCGGGCCGCA CCCCCATCACCACGGTGGCGCTGCCGGACAGCCGTCGCCCGGATGTGATCGAGCGGGTCAAGCTGGCCTGTGAAGAGGGC AAGCAGGCCTACTGGGTCTGTACCCTGATCGAAGAGTCCGAGGTGCTGGAGTGCCAGGCCGCCGAGGATACCGCCGCCGA GCTGCAAAACCAGCTGCCCGGCCTGCATATCGGGCTGGTACACGGCCGGATGCGGCCGGTCGAAAAGCAGCGGGTGATGG AGGAGTTCAAGGCGGGCATACTGCAGCTGCTGGTCGCCACCACAGTCATAGAGGTGGGGGTGGATGTACCCAACGCCAGC CTGATGATCATCGAAAACCCGGAGCGGCTCGGGCTGGCCCAGTTGCACCAGCTGCGCGGCCGGGTCGGTCGCGGTTCTGT GGCCTCTCATTGCGTGCTGCTCTATCATGCTCCCTTGTCCAAGACGGCCCAGAGCCGACTCGGGGTATTGCGGGAGACCA ACGACGGCTTCCTGATCGCCCAGCGCGATCTCGAGCTGCGCGGCCCGGGGGAACTGCTAGGTACCCGCCAGACCGGGCTG GCCGATCTCAAAATTGCCGACCTGGTGCGCGACCAGCCACTCATCCCTCAGGTACAGAAGATGGCGCGCTTCCTGATGGA CAGGCATCCCGCCCATGTTGAACCGCTCATCCGGCGCTGGCTGGGTCTGCGGGATCACTACTCCAACGCCTGA
Upstream 100 bases:
>100_bases ACCTCTGGCCTGGCGCCAGGTGTCACTGCAACGCGGCTTGCACCGAGACGTCAATAACCCCTATCATTTGGACATATTTA CAGTGTTTTCGGGCATCTAA
Downstream 100 bases:
>100_bases GTAGAGCAGAACAAGAAAGAACTAACGTGACACTCAGGCTCCCAATAGATGTGTTGCCACAACACTCAGACCCTGGAGGA AAGCACCGATGAATTCCTGG
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 690; Mature: 690
Protein sequence:
>690_residues MMKLDKISLDSLKGVGSKMQEKLERLGLATVQDLLFHLPLRYEDRTQVWPIGDLPPGLHGAVEGEIQDTQLVMGRRRMLV CRISDGTGTLTLRFFNFTAAQKNSLGQGRLIRCFGEVRPGKYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLT LRSLTDQALAQLDLYGVEELLPAGLYPQQIDLAAALRLLHRPPPSVALALLESGQHPAQQRLVLEELLAHNLSVLKVRAQ AQTQLARALKPAPALVKQLLEALPFKPTGAQNRVVAEINQDLQRSYPMMRLVQGDVGSGKTLVAALAALQAIGNGCQVGL MAPTELLAEQHAINFANWLEPLGIGVGWLAGKQKGKARETQLAAIADGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRF GVHQRLALREKGEREGVHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVALPDSRRPDVIERVKLACEEG KQAYWVCTLIEESEVLECQAAEDTAAELQNQLPGLHIGLVHGRMRPVEKQRVMEEFKAGILQLLVATTVIEVGVDVPNAS LMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGL ADLKIADLVRDQPLIPQVQKMARFLMDRHPAHVEPLIRRWLGLRDHYSNA
Sequences:
>Translated_690_residues MMKLDKISLDSLKGVGSKMQEKLERLGLATVQDLLFHLPLRYEDRTQVWPIGDLPPGLHGAVEGEIQDTQLVMGRRRMLV CRISDGTGTLTLRFFNFTAAQKNSLGQGRLIRCFGEVRPGKYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLT LRSLTDQALAQLDLYGVEELLPAGLYPQQIDLAAALRLLHRPPPSVALALLESGQHPAQQRLVLEELLAHNLSVLKVRAQ AQTQLARALKPAPALVKQLLEALPFKPTGAQNRVVAEINQDLQRSYPMMRLVQGDVGSGKTLVAALAALQAIGNGCQVGL MAPTELLAEQHAINFANWLEPLGIGVGWLAGKQKGKARETQLAAIADGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRF GVHQRLALREKGEREGVHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVALPDSRRPDVIERVKLACEEG KQAYWVCTLIEESEVLECQAAEDTAAELQNQLPGLHIGLVHGRMRPVEKQRVMEEFKAGILQLLVATTVIEVGVDVPNAS LMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGL ADLKIADLVRDQPLIPQVQKMARFLMDRHPAHVEPLIRRWLGLRDHYSNA >Mature_690_residues MMKLDKISLDSLKGVGSKMQEKLERLGLATVQDLLFHLPLRYEDRTQVWPIGDLPPGLHGAVEGEIQDTQLVMGRRRMLV CRISDGTGTLTLRFFNFTAAQKNSLGQGRLIRCFGEVRPGKYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLT LRSLTDQALAQLDLYGVEELLPAGLYPQQIDLAAALRLLHRPPPSVALALLESGQHPAQQRLVLEELLAHNLSVLKVRAQ AQTQLARALKPAPALVKQLLEALPFKPTGAQNRVVAEINQDLQRSYPMMRLVQGDVGSGKTLVAALAALQAIGNGCQVGL MAPTELLAEQHAINFANWLEPLGIGVGWLAGKQKGKARETQLAAIADGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRF GVHQRLALREKGEREGVHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVALPDSRRPDVIERVKLACEEG KQAYWVCTLIEESEVLECQAAEDTAAELQNQLPGLHIGLVHGRMRPVEKQRVMEEFKAGILQLLVATTVIEVGVDVPNAS LMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGL ADLKIADLVRDQPLIPQVQKMARFLMDRHPAHVEPLIRRWLGLRDHYSNA
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=688, Percent_Identity=68.8953488372093, Blast_Score=929, Evalue=0.0, Organism=Escherichia coli, GI1787357, Length=411, Percent_Identity=37.2262773722628, Blast_Score=231, Evalue=9e-62,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 76039; Mature: 76039
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKLDKISLDSLKGVGSKMQEKLERLGLATVQDLLFHLPLRYEDRTQVWPIGDLPPGLHG CCCCCCCCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCC AVEGEIQDTQLVMGRRRMLVCRISDGTGTLTLRFFNFTAAQKNSLGQGRLIRCFGEVRPG CCCCCCCHHHHHHCCCEEEEEEEECCCCEEEEEEEEEEHHHCCCCCCCCEEEEECCCCCC KYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLTLRSLTDQALAQLDLYGVEEL CCCCEECCCHHHHCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH LPAGLYPQQIDLAAALRLLHRPPPSVALALLESGQHPAQQRLVLEELLAHNLSVLKVRAQ HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEHHH AQTQLARALKPAPALVKQLLEALPFKPTGAQNRVVAEINQDLQRSYPMMRLVQGDVGSGK HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCH TLVAALAALQAIGNGCQVGLMAPTELLAEQHAINFANWLEPLGIGVGWLAGKQKGKARET HHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCHHH QLAAIADGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRFGVHQRLALREKGEREGVHPH EEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHEECCHHHCCHHHHHHHHHCCCCCCCCHH QLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVALPDSRRPDVIERVKLACEEG HEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCC KQAYWVCTLIEESEVLECQAAEDTAAELQNQLPGLHIGLVHGRMRPVEKQRVMEEFKAGI CCEEEEEEEECCCCHHEEECCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH LQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLS HHHHHHHHHHHHCCCCCCCEEEEEECCHHCCHHHHHHHHCCCCCCCHHHCEEEEEECCHH KTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGLADLKIADLVRDQPLIPQVQK HHHHHHHHHHEECCCCEEEEECCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHH MARFLMDRHPAHVEPLIRRWLGLRDHYSNA HHHHHHHCCCCHHHHHHHHHCCCHHCCCCC >Mature Secondary Structure MMKLDKISLDSLKGVGSKMQEKLERLGLATVQDLLFHLPLRYEDRTQVWPIGDLPPGLHG CCCCCCCCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCC AVEGEIQDTQLVMGRRRMLVCRISDGTGTLTLRFFNFTAAQKNSLGQGRLIRCFGEVRPG CCCCCCCHHHHHHCCCEEEEEEEECCCCEEEEEEEEEEHHHCCCCCCCCEEEEECCCCCC KYGLEMAHPEYKLLGEEQAGQTEEALTPVYPTTEGLRQLTLRSLTDQALAQLDLYGVEEL CCCCEECCCHHHHCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH LPAGLYPQQIDLAAALRLLHRPPPSVALALLESGQHPAQQRLVLEELLAHNLSVLKVRAQ HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEHHH AQTQLARALKPAPALVKQLLEALPFKPTGAQNRVVAEINQDLQRSYPMMRLVQGDVGSGK HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCH TLVAALAALQAIGNGCQVGLMAPTELLAEQHAINFANWLEPLGIGVGWLAGKQKGKARET HHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCHHH QLAAIADGSVKMVVGTHAIFQEQVVFQRLALVIIDEQHRFGVHQRLALREKGEREGVHPH EEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHEECCHHHCCHHHHHHHHHCCCCCCCCHH QLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPITTVALPDSRRPDVIERVKLACEEG HEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCC KQAYWVCTLIEESEVLECQAAEDTAAELQNQLPGLHIGLVHGRMRPVEKQRVMEEFKAGI CCEEEEEEEECCCCHHEEECCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH LQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLS HHHHHHHHHHHHCCCCCCCEEEEEECCHHCCHHHHHHHHCCCCCCCHHHCEEEEEECCHH KTAQSRLGVLRETNDGFLIAQRDLELRGPGELLGTRQTGLADLKIADLVRDQPLIPQVQK HHHHHHHHHHEECCCCEEEEECCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHH MARFLMDRHPAHVEPLIRRWLGLRDHYSNA HHHHHHHCCCCHHHHHHHHHCCCHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]