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The map label for this gene is ycdT [C]

Identifier: 145300856

GI number: 145300856

Start: 4294709

End: 4296394

Strand: Direct

Name: ycdT [C]

Synonym: ASA_4000

Alternate gene names: 145300856

Gene position: 4294709-4296394 (Clockwise)

Preceding gene: 145300855

Following gene: 145300857

Centisome position: 91.33

GC content: 59.31

Gene sequence:

>1686_bases
ATGGCTCAACCTTCTCGCTCCATCGATCATTTGCTGGCCTACTCCATGTTTCCCGTCTGGGCCGGAGCCATCCTGATGCT
GCTCATCGTGATTGCCCTGGCTCAGGTGCCGGCGGCGCAGCGGGTCGAAGAGCGGCGAATGAAGGAGCACCTGCAGCGGG
TGATCAAGGCGGTGCAGGGTGATATCAGTGCCATCAATGCCTTCACCCGGGATTGGGGCATCTGGGATGAGAGCTATCGC
TTTCTGGCCCACCCCAATCAGGCCTATATTCGTTCCAATTTGCTGGTCGATACCCCGATGCGGGATTTTGAACTCAACGT
ATTGAGCTATATGGATTTGCAGGGGGCCGAGATCTGGACCCGCACCCTGCTGCCCGAGACGCCAGGCACGGACACGACCC
TGCTTCCCTTCTTCCTGGATGACCTCAAGCTGCAGTTGCTGCGTGAATCCCGTCAGGAGGGGATTCGCAGCCTGAGCGGT
GTGAGGGGATCCCAGTGGGGACCCCTCATTTACTCGCTCCAGCCGGTGACCAACACCCTGGGAAACGCCACACCTAATGG
CTATCTGCTGGTGACTCGCTGGCTGGATGCTCGCTATCTGCATGATCTGGCTGAGCGCACAGCCCTCTCTTTGACCCTCT
CCCAGCCAAAGCCTTCCGATAACTTCCTCTCCTTCAAGCCACTCAAGCCACAGATGAGCTATCGACTGGTTGATCTGGGA
CTGCAGCGGATCAGGGGAGAGGGGCTGCTGCTCGACAGCAATGGCGACCCCGTGTTGACCCTGATAGTGGAAGACGATCG
TGATGTGTTGCAGGGGGCGATGGAGGGGGCTATCTGGACCTTCTTTGGCATGTTGTTGATCAGCATCGCCTGCGTTCTGA
TGGCCCTGGCCCGCTTGAGAGCCATAGTGTTGGGGCCGGTCAGCGAGATGGTGAAGGCGTTGCAGAAATTTGGCGACAAG
CAGGATGTGAGCCTGCTGCCGCTTATCGACAGCAGCCAGGAGATGGCCCTGCTCAGCCGCAAGTTCAGGGAGATTGCGGC
CAAGATCAGCCTGCACCACAGTGCCTTGCAGGCGCACTCTTCCAGGATGGAGGTCGCTGCCTATACGGATCCGCTTAAAC
ATGCCTCCAATCGGCGCTACCTCGACGAGTGGTTGCTGACCCGGGATAACGTCACCGCTGCCAGGGTGCTGGTGATCCTG
GACCTGGACTACTTCAAGCAGGTCAATGATCGCTTTGGCCACGACATGGGAGATCTGGTGTTGTGCCAGCTGGCCGCATT
GATGCGCAATGCTCTCGGCGAGGAGGAGCCGCTGATCCGGCTGGGCGGGGAGGAGTTCCTGCTGTTGTTGACCTGTGAGG
AAGCGGAGCGGGTGGCAGATCGGATTGAGCGCTTGCGCCGCAAGATTGCCGAATATCGGTTCGGTCGGGAAGAGGTGCCC
CTCCGGATGACGGCATCACTAGGGTATTGCAGTTACCCCCTGCACCCCGAGCTGAAAGATTCGTTCTGGAATCTCAGCTT
CAAGCTGGCGGACATGGCGCTGTACAGGGCCAAGCAGGAGGGACGGGATCGCTGGCGGGGATACAGCGGTGAACTGGCCC
GGGAGCAGTGGGCATTGAGTCCGGAACAGATAGTGGAGGGAGAGTTCCTCTTGTGTCAGGCATCTCATCTCCGTCAGCCC
GCTTGA

Upstream 100 bases:

>100_bases
ATGGAAGTGATTCAGTTGCCGCCCCAGGAGGTGGATACTCCATACTTGGTACAAGACAGTTTTCGCTCCCTCGTTTGCCG
TCCAAAGGATATTGGCGTTC

Downstream 100 bases:

>100_bases
TGGGCCTGTATTGACAGTAGGGTGCCGGGGATAAATACCTGCCACATCAGCTGGAAAAATGGGATCTCATATGATGGCTG
CGCGGAGACTACTGTGTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 561; Mature: 560

Protein sequence:

>561_residues
MAQPSRSIDHLLAYSMFPVWAGAILMLLIVIALAQVPAAQRVEERRMKEHLQRVIKAVQGDISAINAFTRDWGIWDESYR
FLAHPNQAYIRSNLLVDTPMRDFELNVLSYMDLQGAEIWTRTLLPETPGTDTTLLPFFLDDLKLQLLRESRQEGIRSLSG
VRGSQWGPLIYSLQPVTNTLGNATPNGYLLVTRWLDARYLHDLAERTALSLTLSQPKPSDNFLSFKPLKPQMSYRLVDLG
LQRIRGEGLLLDSNGDPVLTLIVEDDRDVLQGAMEGAIWTFFGMLLISIACVLMALARLRAIVLGPVSEMVKALQKFGDK
QDVSLLPLIDSSQEMALLSRKFREIAAKISLHHSALQAHSSRMEVAAYTDPLKHASNRRYLDEWLLTRDNVTAARVLVIL
DLDYFKQVNDRFGHDMGDLVLCQLAALMRNALGEEEPLIRLGGEEFLLLLTCEEAERVADRIERLRRKIAEYRFGREEVP
LRMTASLGYCSYPLHPELKDSFWNLSFKLADMALYRAKQEGRDRWRGYSGELAREQWALSPEQIVEGEFLLCQASHLRQP
A

Sequences:

>Translated_561_residues
MAQPSRSIDHLLAYSMFPVWAGAILMLLIVIALAQVPAAQRVEERRMKEHLQRVIKAVQGDISAINAFTRDWGIWDESYR
FLAHPNQAYIRSNLLVDTPMRDFELNVLSYMDLQGAEIWTRTLLPETPGTDTTLLPFFLDDLKLQLLRESRQEGIRSLSG
VRGSQWGPLIYSLQPVTNTLGNATPNGYLLVTRWLDARYLHDLAERTALSLTLSQPKPSDNFLSFKPLKPQMSYRLVDLG
LQRIRGEGLLLDSNGDPVLTLIVEDDRDVLQGAMEGAIWTFFGMLLISIACVLMALARLRAIVLGPVSEMVKALQKFGDK
QDVSLLPLIDSSQEMALLSRKFREIAAKISLHHSALQAHSSRMEVAAYTDPLKHASNRRYLDEWLLTRDNVTAARVLVIL
DLDYFKQVNDRFGHDMGDLVLCQLAALMRNALGEEEPLIRLGGEEFLLLLTCEEAERVADRIERLRRKIAEYRFGREEVP
LRMTASLGYCSYPLHPELKDSFWNLSFKLADMALYRAKQEGRDRWRGYSGELAREQWALSPEQIVEGEFLLCQASHLRQP
A
>Mature_560_residues
AQPSRSIDHLLAYSMFPVWAGAILMLLIVIALAQVPAAQRVEERRMKEHLQRVIKAVQGDISAINAFTRDWGIWDESYRF
LAHPNQAYIRSNLLVDTPMRDFELNVLSYMDLQGAEIWTRTLLPETPGTDTTLLPFFLDDLKLQLLRESRQEGIRSLSGV
RGSQWGPLIYSLQPVTNTLGNATPNGYLLVTRWLDARYLHDLAERTALSLTLSQPKPSDNFLSFKPLKPQMSYRLVDLGL
QRIRGEGLLLDSNGDPVLTLIVEDDRDVLQGAMEGAIWTFFGMLLISIACVLMALARLRAIVLGPVSEMVKALQKFGDKQ
DVSLLPLIDSSQEMALLSRKFREIAAKISLHHSALQAHSSRMEVAAYTDPLKHASNRRYLDEWLLTRDNVTAARVLVILD
LDYFKQVNDRFGHDMGDLVLCQLAALMRNALGEEEPLIRLGGEEFLLLLTCEEAERVADRIERLRRKIAEYRFGREEVPL
RMTASLGYCSYPLHPELKDSFWNLSFKLADMALYRAKQEGRDRWRGYSGELAREQWALSPEQIVEGEFLLCQASHLRQPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=215, Percent_Identity=31.1627906976744, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=29.7752808988764, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI87082007, Length=129, Percent_Identity=38.7596899224806, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787802, Length=178, Percent_Identity=29.7752808988764, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=31.25, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=33.5329341317365, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081977, Length=159, Percent_Identity=34.5911949685535, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788381, Length=182, Percent_Identity=35.7142857142857, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787816, Length=132, Percent_Identity=34.0909090909091, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=32.5842696629214, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 63807; Mature: 63675

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQPSRSIDHLLAYSMFPVWAGAILMLLIVIALAQVPAAQRVEERRMKEHLQRVIKAVQG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
DISAINAFTRDWGIWDESYRFLAHPNQAYIRSNLLVDTPMRDFELNVLSYMDLQGAEIWT
CHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHCCCEEECCCCCHHHHHHHHCCCCCHHHHH
RTLLPETPGTDTTLLPFFLDDLKLQLLRESRQEGIRSLSGVRGSQWGPLIYSLQPVTNTL
HHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHH
GNATPNGYLLVTRWLDARYLHDLAERTALSLTLSQPKPSDNFLSFKPLKPQMSYRLVDLG
CCCCCCCEEEEEEHHHHHHHHHHHHHHEEEEEECCCCCCCCCEECCCCCHHHHHHHHHHH
LQRIRGEGLLLDSNGDPVLTLIVEDDRDVLQGAMEGAIWTFFGMLLISIACVLMALARLR
HHHHCCCEEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIVLGPVSEMVKALQKFGDKQDVSLLPLIDSSQEMALLSRKFREIAAKISLHHSALQAHS
HHHHCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRMEVAAYTDPLKHASNRRYLDEWLLTRDNVTAARVLVILDLDYFKQVNDRFGHDMGDLV
CCCCHHHHCCHHHHCCCCHHHHHHHHCCCCCCHHHEEEEECHHHHHHHHHHHCCCHHHHH
LCQLAALMRNALGEEEPLIRLGGEEFLLLLTCEEAERVADRIERLRRKIAEYRFGREEVP
HHHHHHHHHHHCCCCCCEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LRMTASLGYCSYPLHPELKDSFWNLSFKLADMALYRAKQEGRDRWRGYSGELAREQWALS
EEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC
PEQIVEGEFLLCQASHLRQPA
HHHHHCCCEEEEEHHHCCCCC
>Mature Secondary Structure 
AQPSRSIDHLLAYSMFPVWAGAILMLLIVIALAQVPAAQRVEERRMKEHLQRVIKAVQG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
DISAINAFTRDWGIWDESYRFLAHPNQAYIRSNLLVDTPMRDFELNVLSYMDLQGAEIWT
CHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHCCCEEECCCCCHHHHHHHHCCCCCHHHHH
RTLLPETPGTDTTLLPFFLDDLKLQLLRESRQEGIRSLSGVRGSQWGPLIYSLQPVTNTL
HHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHH
GNATPNGYLLVTRWLDARYLHDLAERTALSLTLSQPKPSDNFLSFKPLKPQMSYRLVDLG
CCCCCCCEEEEEEHHHHHHHHHHHHHHEEEEEECCCCCCCCCEECCCCCHHHHHHHHHHH
LQRIRGEGLLLDSNGDPVLTLIVEDDRDVLQGAMEGAIWTFFGMLLISIACVLMALARLR
HHHHCCCEEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIVLGPVSEMVKALQKFGDKQDVSLLPLIDSSQEMALLSRKFREIAAKISLHHSALQAHS
HHHHCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRMEVAAYTDPLKHASNRRYLDEWLLTRDNVTAARVLVILDLDYFKQVNDRFGHDMGDLV
CCCCHHHHCCHHHHCCCCHHHHHHHHCCCCCCHHHEEEEECHHHHHHHHHHHCCCHHHHH
LCQLAALMRNALGEEEPLIRLGGEEFLLLLTCEEAERVADRIERLRRKIAEYRFGREEVP
HHHHHHHHHHHCCCCCCEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LRMTASLGYCSYPLHPELKDSFWNLSFKLADMALYRAKQEGRDRWRGYSGELAREQWALS
EEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC
PEQIVEGEFLLCQASHLRQPA
HHHHHCCCEEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]