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The map label for this gene is cspA [H]

Identifier: 145300857

GI number: 145300857

Start: 4296947

End: 4297159

Strand: Direct

Name: cspA [H]

Synonym: ASA_4001

Alternate gene names: 145300857

Gene position: 4296947-4297159 (Clockwise)

Preceding gene: 145300856

Following gene: 145300861

Centisome position: 91.38

GC content: 50.7

Gene sequence:

>213_bases
ATGTCTAACAAAATGACTGGTACCGTTAAATTCTTCAACGCCGAGAAAGGTTTTGGTTTCATCTCCCCGGCTGACGGCAG
CAAAGACGTGTTCGTACACTTCTCTGCAATCCAGTCCACCAGCTTCAAAACTCTGGACGAAGGTCAGCGCGTTGAGTTCA
CCATCGAGCAAGGCCAGAAAGGCCCGGCTGCTGCCAACGTAGTTGGTCTGTAA

Upstream 100 bases:

>100_bases
TAAATAATTCTCCTTCTTTAGTGCTCCCCATACGTATTGCTGACGAAAAATCATAGATTGCCAACTTTTGGCACTTAAAA
CACTATTTTAGGAAATTATT

Downstream 100 bases:

>100_bases
TTCAAGCAAGGAAGCCTTCACGCTAGCTAACGCCTGCTGAGAAGACCTTCTGCAAGAATTAAAAAAACCCGCCTAGGCGG
GTTTTTTGTTGTCTGAAATT

Product: major cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSNKMTGTVKFFNAEKGFGFISPADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQGQKGPAAANVVGL

Sequences:

>Translated_70_residues
MSNKMTGTVKFFNAEKGFGFISPADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQGQKGPAAANVVGL
>Mature_69_residues
SNKMTGTVKFFNAEKGFGFISPADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQGQKGPAAANVVGL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586884, Length=73, Percent_Identity=42.4657534246575, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI224586882, Length=73, Percent_Identity=42.4657534246575, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI34098946, Length=73, Percent_Identity=42.4657534246575, Blast_Score=62, Evalue=9e-11,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=78.5714285714286, Blast_Score=119, Evalue=6e-29,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=76.4705882352941, Blast_Score=111, Evalue=9e-27,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=74.2857142857143, Blast_Score=110, Evalue=2e-26,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=77.1428571428572, Blast_Score=110, Evalue=3e-26,
Organism=Escherichia coli, GI1786841, Length=67, Percent_Identity=71.6417910447761, Blast_Score=101, Evalue=1e-23,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=71.6417910447761, Blast_Score=100, Evalue=3e-23,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=51.6129032258064, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=52.2388059701493, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1787840, Length=67, Percent_Identity=47.7611940298507, Blast_Score=66, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7503; Mature: 7371

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKMTGTVKFFNAEKGFGFISPADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQGQK
CCCCCCEEEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCC
GPAAANVVGL
CCCCEEEECC
>Mature Secondary Structure 
SNKMTGTVKFFNAEKGFGFISPADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQGQK
CCCCCEEEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCC
GPAAANVVGL
CCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA