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The map label for this gene is yidZ [H]

Identifier: 145300830

GI number: 145300830

Start: 4264641

End: 4265609

Strand: Direct

Name: yidZ [H]

Synonym: ASA_3971

Alternate gene names: 145300830

Gene position: 4264641-4265609 (Clockwise)

Preceding gene: 145300825

Following gene: 145300833

Centisome position: 90.69

GC content: 61.61

Gene sequence:

>969_bases
ATGTTGTTGGAACAGCTGGGGCGTATCGACCTCAATCTATTGATTATCCTGCAAGTTTTGCTGGAAGAGCGGAATGGTAG
CCGGGCCGCCCGTCGCCTGCATCTGAGCCAGTCTGCCGTCAGCAAGGCCCTGGGGCGCCTGCGGGAAACCTTCGACGATC
CCCTGTTCGTGCGCTCCGCCTACGGGCTGGAACCCACGGCCCGCGCTCTGGTGCTGCAACAGCAACTGCAACCCATACTG
CTGTCCCTGGACAACCTGATCCAGCCGCCGGATTTCGATCCAGCCAGCACAGAGCGGGAGTTTGTGATCGCCAGCATGGA
CAGCGCCTTCACCCTGTTTGCCCCGCTCTATTTGAGCGAGCTGAAACGCCAGGCACCGGGTATACGGCTGCGCTACGAGG
AGTGGACCGAGAATAGCCTGACCGAGATGAGCCAGGGTCAGGTGGATATTGCCTTCACGGTGCGGGAGAACTGCATCAGC
TCGGACTTTCGGCTCGATACCCTGCCCAACGCCATCTGCCAGCGGCTGCTCGCCATTGATGATCTCACCTGTCTGGTGCA
GCATGATCACCCTGCCCTGCACGAACCCGAATGGGACCTCGCCCGCTACCTGGCCTATCCCCATGTACAGACCTATTGCG
AGGGACGGGATCGCTGGATGCTGGATCACAAGCTGGCGGGGATGGATCTCTACCGCCGGATTGAGGCAACCGTGCCCTCG
TTCGAGGCCGCGCTGCGAATGGGCATGCACTCGGACATGATAGTGACCCTCTCCAGACTCTATGCACGCCACGCCACCCA
GGTCTATCCGCTGGTGCCGCTGCCGCTGCCCATTGCACTCGACAGCATCTCCCACCTGCTCATCTGGCATCAGCGCCACG
AAGAGGACCCGGGCCACCGCTGGTTACGGGAGACACTGCTCGCCCTCATCATGAGCAAGCTGGAACCCTCGGCAACCGAG
CCCTCCTGA

Upstream 100 bases:

>100_bases
ACCAGCCGCCATGAAGGCGAGAGACGAACCGAGCATAGGGTCGCCAAGATATGAAAACAAATGGTATAAATTCATCTAAG
AATTGAAAAGAATTCATATC

Downstream 100 bases:

>100_bases
CTATCAGCACCGAGTAAGAGAACGCCCGGCCTTCCTCATCATGAGTGAGCCGGATACCGCTGCCAACGACTGGCCTGATT
ATCAGTGTTGGCGAGGGGAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MLLEQLGRIDLNLLIILQVLLEERNGSRAARRLHLSQSAVSKALGRLRETFDDPLFVRSAYGLEPTARALVLQQQLQPIL
LSLDNLIQPPDFDPASTEREFVIASMDSAFTLFAPLYLSELKRQAPGIRLRYEEWTENSLTEMSQGQVDIAFTVRENCIS
SDFRLDTLPNAICQRLLAIDDLTCLVQHDHPALHEPEWDLARYLAYPHVQTYCEGRDRWMLDHKLAGMDLYRRIEATVPS
FEAALRMGMHSDMIVTLSRLYARHATQVYPLVPLPLPIALDSISHLLIWHQRHEEDPGHRWLRETLLALIMSKLEPSATE
PS

Sequences:

>Translated_322_residues
MLLEQLGRIDLNLLIILQVLLEERNGSRAARRLHLSQSAVSKALGRLRETFDDPLFVRSAYGLEPTARALVLQQQLQPIL
LSLDNLIQPPDFDPASTEREFVIASMDSAFTLFAPLYLSELKRQAPGIRLRYEEWTENSLTEMSQGQVDIAFTVRENCIS
SDFRLDTLPNAICQRLLAIDDLTCLVQHDHPALHEPEWDLARYLAYPHVQTYCEGRDRWMLDHKLAGMDLYRRIEATVPS
FEAALRMGMHSDMIVTLSRLYARHATQVYPLVPLPLPIALDSISHLLIWHQRHEEDPGHRWLRETLLALIMSKLEPSATE
PS
>Mature_322_residues
MLLEQLGRIDLNLLIILQVLLEERNGSRAARRLHLSQSAVSKALGRLRETFDDPLFVRSAYGLEPTARALVLQQQLQPIL
LSLDNLIQPPDFDPASTEREFVIASMDSAFTLFAPLYLSELKRQAPGIRLRYEEWTENSLTEMSQGQVDIAFTVRENCIS
SDFRLDTLPNAICQRLLAIDDLTCLVQHDHPALHEPEWDLARYLAYPHVQTYCEGRDRWMLDHKLAGMDLYRRIEATVPS
FEAALRMGMHSDMIVTLSRLYARHATQVYPLVPLPLPIALDSISHLLIWHQRHEEDPGHRWLRETLLALIMSKLEPSATE
PS

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=300, Percent_Identity=32.6666666666667, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI87081684, Length=314, Percent_Identity=28.6624203821656, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI87081766, Length=285, Percent_Identity=25.6140350877193, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786820, Length=101, Percent_Identity=37.6237623762376, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36905; Mature: 36905

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLEQLGRIDLNLLIILQVLLEERNGSRAARRLHLSQSAVSKALGRLRETFDDPLFVRSA
CCHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHC
YGLEPTARALVLQQQLQPILLSLDNLIQPPDFDPASTEREFVIASMDSAFTLFAPLYLSE
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
LKRQAPGIRLRYEEWTENSLTEMSQGQVDIAFTVRENCISSDFRLDTLPNAICQRLLAID
HHHHCCCCEEEEHHHCCHHHHHHHCCCEEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHH
DLTCLVQHDHPALHEPEWDLARYLAYPHVQTYCEGRDRWMLDHKLAGMDLYRRIEATVPS
HHHHEEECCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCH
FEAALRMGMHSDMIVTLSRLYARHATQVYPLVPLPLPIALDSISHLLIWHQRHEEDPGHR
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCHHHH
WLRETLLALIMSKLEPSATEPS
HHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLLEQLGRIDLNLLIILQVLLEERNGSRAARRLHLSQSAVSKALGRLRETFDDPLFVRSA
CCHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHC
YGLEPTARALVLQQQLQPILLSLDNLIQPPDFDPASTEREFVIASMDSAFTLFAPLYLSE
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
LKRQAPGIRLRYEEWTENSLTEMSQGQVDIAFTVRENCISSDFRLDTLPNAICQRLLAID
HHHHCCCCEEEEHHHCCHHHHHHHCCCEEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHH
DLTCLVQHDHPALHEPEWDLARYLAYPHVQTYCEGRDRWMLDHKLAGMDLYRRIEATVPS
HHHHEEECCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCH
FEAALRMGMHSDMIVTLSRLYARHATQVYPLVPLPLPIALDSISHLLIWHQRHEEDPGHR
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCHHHH
WLRETLLALIMSKLEPSATEPS
HHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA