| Definition | Aeromonas salmonicida subsp. salmonicida A449, complete genome. |
|---|---|
| Accession | NC_009348 |
| Length | 4,702,402 |
Click here to switch to the map view.
The map label for this gene is yheS [H]
Identifier: 145300403
GI number: 145300403
Start: 3819271
End: 3821181
Strand: Direct
Name: yheS [H]
Synonym: ASA_3528
Alternate gene names: 145300403
Gene position: 3819271-3821181 (Clockwise)
Preceding gene: 145300401
Following gene: 145300404
Centisome position: 81.22
GC content: 62.59
Gene sequence:
>1911_bases ATGATAGTTGCCAGTCAAATCGAACTGATCCGCGGCGGCCGCAAGCTGCTGGACAACGCTTCCGCCACCATTCACCCGGG CCACAAGGTGGGCCTGGTGGGTAAAAATGGCAGTGGCAAGTCCACCTTTTTTGCACTGGTACGGGGCGAGCTTGCCATCG ACAGCGGCAGCTTCAGCCTGCCCGCCGGCTGGCAGATTGCCGGTGTGGCCCAGGAGACGCCGGCGCTGGACTGCTCTGCG CTGGACTACGTGATCGACGGCGACAAGGAGTTCCGCTCACTGGAAGCCCAGCTGGCCCAGGCCGAGCTGGATGACAACGG CATACTGGTGGCCGAGCTGCACGGCAAGCTCGATACCATAGGCGCTTACAGCATTCGGGCCCGCGCCGCCGAGCTGCTGC ACGGTCTGGGTTTTGGCGACGAGCAACTCGGCTCGCCGGTACGCAGCTTCTCCGGTGGCTGGCGCATGCGCCTGAACCTG GCCCAGGCCCTGCTCTGCCGCTCCGACCTGTTGCTGCTCGATGAACCGACCAACCACCTGGATCTCGATGCCGTCATCTG GCTGGAGAAGTGGCTCAAGGGCTATCAGGGCACGCTCGTGCTGATTTCGCACGACCGCGACTTCCTCGACTCTGTCATCA GCCGCATCATCCACATCGAGAACGGCAAGCTCAACGAATACACCGGCGGCTACTCCGACTTCGAACTGCAACGTGCCGAG CAGCTGGCCCAGCAGCAGTCCATGTACGAGAAGCAGCAGCGGGAGGTGTCCCACATGCAGGCCTATGTGGACCGCTTCCG CTACAAAGCCTCCAAGGCCCGTCAGGCCCAGAGTCGCCTCAAAGCCATGGAGCGGATGGAGAAACTCCTGCCCGCCCACG CCGATTCCGAGTTCAGCTTCGAGTTTCGCGAGCCGTCGGCCTTGCCGACCCCGCTCATCGCCATGGAGAACCTCTGCGCC GGTTACGGCGACAAGGTGATCCTGGAGAAGATAAAGATGAACCTGGTGCCGGGTTCACGCATCGGCCTGCTCGGTCGCAA CGGCGCCGGCAAGTCCACCTTCATCAAGATGCTGTCGGGCACCAATCCGCCCCTGTCGGGCAAGCTGGAAGTGAGCGCGG GTGTCAGCATCGGCTACTTCGCCCAGCATCAGCTCGAAACCCTGCGCCTCGACGATACCCCGCTCGATCACCTGGCCCGC CTCGCGCCGGACAAGTCCGAGCAGGAGCTGCGCAACTATCTGGGCAGTTTTGGTTTTCACGGTGACAAGGCGCTGGACAA AGTTGCCCCCTTCTCCGGCGGCGAAAAGGCACGGCTGGTACTGGCACTCGTCACCTGGCAAAAACCGAACCTCTTGCTGC TGGATGAACCGACCAACCACCTGGATCTGGAGATGCGCCACGCCCTGACCATGGCGCTGCAAGGCTTCGAGGGCGCCATG GTGGTGGTCTCTCACGACCGGCACCTGCTGCGCACCACCACGGATGACTTCTATCTGGTGCACGGTGGCCGGGTCGAAGC CTTCGATGGCGATCTGGACGACTACCACAAGTGGCTGGGCGAGCAGGAGAAAGAGGCCAACGCCAAGCCCAGCGACGGCA TCATCTCAGCCAACTCGGCACTGGCGCGCAAGGATCAGAAGCGGCGCGAGGCGGAATTCCGCCAGCAGACCCGCCCCCTG CGCCAGAAGCTGGAGAAGCTGGAAGCCAGCATGGCGAAATTGCAGACCCGATTGGCGGCCGTGGAAGAGCAGCTGGCCGA CCCCGCCATCTATGAAGAGGCGGCCAAGAACAAGCTCTCGGAGCTGCTCAAATCCCAAGGGCCCATCAAGGAAGAGCTGG ATGGTGTCGAGCAGGAATGGATGAGCCTCTCTGAAGAGCTGGAAACCATGGAGCAGACCTTCCTTGCATGA
Upstream 100 bases:
>100_bases CAGCCAGTCGCCCGTCCTTAGCCCAAGTGCAAATCTGCGCCATTTCACGTAAGATCCGCGCCAGATTTTCTCCTCCATTT TGAGCAAGCAGACCCCACCC
Downstream 100 bases:
>100_bases TGACCCGCTGATAGCGACCGAGCGGGTCGCCGTACACGAATTGCCAACGCCCATCGGCTTCTGGCACTGGAGCGGCAAGG TCTATGGCGAGCGCAGCCAG
Product: ABC-type transporter, ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 636; Mature: 636
Protein sequence:
>636_residues MIVASQIELIRGGRKLLDNASATIHPGHKVGLVGKNGSGKSTFFALVRGELAIDSGSFSLPAGWQIAGVAQETPALDCSA LDYVIDGDKEFRSLEAQLAQAELDDNGILVAELHGKLDTIGAYSIRARAAELLHGLGFGDEQLGSPVRSFSGGWRMRLNL AQALLCRSDLLLLDEPTNHLDLDAVIWLEKWLKGYQGTLVLISHDRDFLDSVISRIIHIENGKLNEYTGGYSDFELQRAE QLAQQQSMYEKQQREVSHMQAYVDRFRYKASKARQAQSRLKAMERMEKLLPAHADSEFSFEFREPSALPTPLIAMENLCA GYGDKVILEKIKMNLVPGSRIGLLGRNGAGKSTFIKMLSGTNPPLSGKLEVSAGVSIGYFAQHQLETLRLDDTPLDHLAR LAPDKSEQELRNYLGSFGFHGDKALDKVAPFSGGEKARLVLALVTWQKPNLLLLDEPTNHLDLEMRHALTMALQGFEGAM VVVSHDRHLLRTTTDDFYLVHGGRVEAFDGDLDDYHKWLGEQEKEANAKPSDGIISANSALARKDQKRREAEFRQQTRPL RQKLEKLEASMAKLQTRLAAVEEQLADPAIYEEAAKNKLSELLKSQGPIKEELDGVEQEWMSLSEELETMEQTFLA
Sequences:
>Translated_636_residues MIVASQIELIRGGRKLLDNASATIHPGHKVGLVGKNGSGKSTFFALVRGELAIDSGSFSLPAGWQIAGVAQETPALDCSA LDYVIDGDKEFRSLEAQLAQAELDDNGILVAELHGKLDTIGAYSIRARAAELLHGLGFGDEQLGSPVRSFSGGWRMRLNL AQALLCRSDLLLLDEPTNHLDLDAVIWLEKWLKGYQGTLVLISHDRDFLDSVISRIIHIENGKLNEYTGGYSDFELQRAE QLAQQQSMYEKQQREVSHMQAYVDRFRYKASKARQAQSRLKAMERMEKLLPAHADSEFSFEFREPSALPTPLIAMENLCA GYGDKVILEKIKMNLVPGSRIGLLGRNGAGKSTFIKMLSGTNPPLSGKLEVSAGVSIGYFAQHQLETLRLDDTPLDHLAR LAPDKSEQELRNYLGSFGFHGDKALDKVAPFSGGEKARLVLALVTWQKPNLLLLDEPTNHLDLEMRHALTMALQGFEGAM VVVSHDRHLLRTTTDDFYLVHGGRVEAFDGDLDDYHKWLGEQEKEANAKPSDGIISANSALARKDQKRREAEFRQQTRPL RQKLEKLEASMAKLQTRLAAVEEQLADPAIYEEAAKNKLSELLKSQGPIKEELDGVEQEWMSLSEELETMEQTFLA >Mature_636_residues MIVASQIELIRGGRKLLDNASATIHPGHKVGLVGKNGSGKSTFFALVRGELAIDSGSFSLPAGWQIAGVAQETPALDCSA LDYVIDGDKEFRSLEAQLAQAELDDNGILVAELHGKLDTIGAYSIRARAAELLHGLGFGDEQLGSPVRSFSGGWRMRLNL AQALLCRSDLLLLDEPTNHLDLDAVIWLEKWLKGYQGTLVLISHDRDFLDSVISRIIHIENGKLNEYTGGYSDFELQRAE QLAQQQSMYEKQQREVSHMQAYVDRFRYKASKARQAQSRLKAMERMEKLLPAHADSEFSFEFREPSALPTPLIAMENLCA GYGDKVILEKIKMNLVPGSRIGLLGRNGAGKSTFIKMLSGTNPPLSGKLEVSAGVSIGYFAQHQLETLRLDDTPLDHLAR LAPDKSEQELRNYLGSFGFHGDKALDKVAPFSGGEKARLVLALVTWQKPNLLLLDEPTNHLDLEMRHALTMALQGFEGAM VVVSHDRHLLRTTTDDFYLVHGGRVEAFDGDLDDYHKWLGEQEKEANAKPSDGIISANSALARKDQKRREAEFRQQTRPL RQKLEKLEASMAKLQTRLAAVEEQLADPAIYEEAAKNKLSELLKSQGPIKEELDGVEQEWMSLSEELETMEQTFLA
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=521, Percent_Identity=38.7715930902111, Blast_Score=367, Evalue=1e-101, Organism=Homo sapiens, GI10947137, Length=518, Percent_Identity=36.2934362934363, Blast_Score=327, Evalue=2e-89, Organism=Homo sapiens, GI27881506, Length=518, Percent_Identity=36.2934362934363, Blast_Score=327, Evalue=3e-89, Organism=Homo sapiens, GI10947135, Length=536, Percent_Identity=33.5820895522388, Blast_Score=267, Evalue=2e-71, Organism=Homo sapiens, GI69354671, Length=536, Percent_Identity=33.5820895522388, Blast_Score=266, Evalue=3e-71, Organism=Escherichia coli, GI1789751, Length=630, Percent_Identity=63.3333333333333, Blast_Score=839, Evalue=0.0, Organism=Escherichia coli, GI1787041, Length=524, Percent_Identity=34.5419847328244, Blast_Score=301, Evalue=1e-82, Organism=Escherichia coli, GI1787182, Length=624, Percent_Identity=29.0064102564103, Blast_Score=258, Evalue=1e-69, Organism=Escherichia coli, GI2367384, Length=529, Percent_Identity=31.3799621928166, Blast_Score=224, Evalue=2e-59, Organism=Escherichia coli, GI1788165, Length=197, Percent_Identity=32.48730964467, Blast_Score=89, Evalue=8e-19, Organism=Escherichia coli, GI1787164, Length=216, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1787029, Length=222, Percent_Identity=26.5765765765766, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1789672, Length=217, Percent_Identity=26.2672811059908, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1788506, Length=228, Percent_Identity=26.7543859649123, Blast_Score=65, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17553372, Length=530, Percent_Identity=37.1698113207547, Blast_Score=359, Evalue=3e-99, Organism=Caenorhabditis elegans, GI17555318, Length=523, Percent_Identity=36.3288718929254, Blast_Score=325, Evalue=5e-89, Organism=Caenorhabditis elegans, GI17559834, Length=533, Percent_Identity=34.8968105065666, Blast_Score=308, Evalue=6e-84, Organism=Caenorhabditis elegans, GI212646699, Length=340, Percent_Identity=25.8823529411765, Blast_Score=66, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=536, Percent_Identity=35.8208955223881, Blast_Score=348, Evalue=2e-96, Organism=Saccharomyces cerevisiae, GI6320874, Length=532, Percent_Identity=33.6466165413534, Blast_Score=308, Evalue=2e-84, Organism=Saccharomyces cerevisiae, GI6325030, Length=387, Percent_Identity=32.2997416020672, Blast_Score=158, Evalue=2e-39, Organism=Saccharomyces cerevisiae, GI6324314, Length=412, Percent_Identity=28.6407766990291, Blast_Score=140, Evalue=8e-34, Organism=Saccharomyces cerevisiae, GI6323278, Length=410, Percent_Identity=27.0731707317073, Blast_Score=134, Evalue=5e-32, Organism=Drosophila melanogaster, GI24666836, Length=540, Percent_Identity=37.4074074074074, Blast_Score=369, Evalue=1e-102, Organism=Drosophila melanogaster, GI24642252, Length=534, Percent_Identity=38.3895131086142, Blast_Score=352, Evalue=3e-97, Organism=Drosophila melanogaster, GI18859989, Length=534, Percent_Identity=38.3895131086142, Blast_Score=352, Evalue=3e-97, Organism=Drosophila melanogaster, GI24641342, Length=554, Percent_Identity=35.1985559566787, Blast_Score=316, Evalue=4e-86,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 70670; Mature: 70670
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVASQIELIRGGRKLLDNASATIHPGHKVGLVGKNGSGKSTFFALVRGELAIDSGSFSL CCCHHHHHHHHCCHHHHCCCCCEECCCCEEEEEECCCCCCCEEEEEEECCEEECCCCCCC PAGWQIAGVAQETPALDCSALDYVIDGDKEFRSLEAQLAQAELDDNGILVAELHGKLDTI CCCCEEECCCCCCCCCCCCHHHEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC GAYSIRARAAELLHGLGFGDEQLGSPVRSFSGGWRMRLNLAQALLCRSDLLLLDEPTNHL CHHHHHHHHHHHHHHCCCCHHHHCCHHHHCCCCCEEEHHHHHHHHHHCCEEEEECCCCCC DLDAVIWLEKWLKGYQGTLVLISHDRDFLDSVISRIIHIENGKLNEYTGGYSDFELQRAE CHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHH QLAQQQSMYEKQQREVSHMQAYVDRFRYKASKARQAQSRLKAMERMEKLLPAHADSEFSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE EFREPSALPTPLIAMENLCAGYGDKVILEKIKMNLVPGSRIGLLGRNGAGKSTFIKMLSG EECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCC TNPPLSGKLEVSAGVSIGYFAQHQLETLRLDDTPLDHLARLAPDKSEQELRNYLGSFGFH CCCCCCCEEEEECCCEEHHHHHHHHHHEECCCCCHHHHHHHCCCCCHHHHHHHHHHCCCC GDKALDKVAPFSGGEKARLVLALVTWQKPNLLLLDEPTNHLDLEMRHALTMALQGFEGAM CCHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE VVVSHDRHLLRTTTDDFYLVHGGRVEAFDGDLDDYHKWLGEQEKEANAKPSDGIISANSA EEEECCCEEEEECCCCEEEEECCEEEECCCCHHHHHHHCCCCHHHCCCCCCCCEEECCHH LARKDQKRREAEFRQQTRPLRQKLEKLEASMAKLQTRLAAVEEQLADPAIYEEAAKNKLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ELLKSQGPIKEELDGVEQEWMSLSEELETMEQTFLA HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIVASQIELIRGGRKLLDNASATIHPGHKVGLVGKNGSGKSTFFALVRGELAIDSGSFSL CCCHHHHHHHHCCHHHHCCCCCEECCCCEEEEEECCCCCCCEEEEEEECCEEECCCCCCC PAGWQIAGVAQETPALDCSALDYVIDGDKEFRSLEAQLAQAELDDNGILVAELHGKLDTI CCCCEEECCCCCCCCCCCCHHHEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC GAYSIRARAAELLHGLGFGDEQLGSPVRSFSGGWRMRLNLAQALLCRSDLLLLDEPTNHL CHHHHHHHHHHHHHHCCCCHHHHCCHHHHCCCCCEEEHHHHHHHHHHCCEEEEECCCCCC DLDAVIWLEKWLKGYQGTLVLISHDRDFLDSVISRIIHIENGKLNEYTGGYSDFELQRAE CHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHH QLAQQQSMYEKQQREVSHMQAYVDRFRYKASKARQAQSRLKAMERMEKLLPAHADSEFSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE EFREPSALPTPLIAMENLCAGYGDKVILEKIKMNLVPGSRIGLLGRNGAGKSTFIKMLSG EECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCC TNPPLSGKLEVSAGVSIGYFAQHQLETLRLDDTPLDHLARLAPDKSEQELRNYLGSFGFH CCCCCCCEEEEECCCEEHHHHHHHHHHEECCCCCHHHHHHHCCCCCHHHHHHHHHHCCCC GDKALDKVAPFSGGEKARLVLALVTWQKPNLLLLDEPTNHLDLEMRHALTMALQGFEGAM CCHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE VVVSHDRHLLRTTTDDFYLVHGGRVEAFDGDLDDYHKWLGEQEKEANAKPSDGIISANSA EEEECCCEEEEECCCCEEEEECCEEEECCCCHHHHHHHCCCCHHHCCCCCCCCEEECCHH LARKDQKRREAEFRQQTRPLRQKLEKLEASMAKLQTRLAAVEEQLADPAIYEEAAKNKLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ELLKSQGPIKEELDGVEQEWMSLSEELETMEQTFLA HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]