Click here to switch to the map view.

The map label for this gene is ybfM [H]

Identifier: 145300143

GI number: 145300143

Start: 3512050

End: 3513486

Strand: Direct

Name: ybfM [H]

Synonym: ASA_3246

Alternate gene names: 145300143

Gene position: 3512050-3513486 (Clockwise)

Preceding gene: 145300142

Following gene: 145300144

Centisome position: 74.69

GC content: 48.36

Gene sequence:

>1437_bases
ATGGAAAAAGTGATCTTCAAGCGTGCCGCATTGAGCGCAGCTGTTGTTGCCGCCTTGGTAGCCCCCGGTATGGCATTTGC
TGCCCAGGATATGATGAGCCCGACCTATGGCAAGTCATATGAGGCTTTTGCTGATGATGCCAAGCTGAGCGGCGGAGTTT
TCTACTTTCAGCGCGAACGTGATCGCAAACAAGCTCAGGATGCGCATTACAACGACAAAGGCGAATATGTGCCTGCTCAG
GATGGCAAGTATCACTCCAACCTGAGCCATTCGACAGCTCAGCTTGCCCTGAATTTTAACTCTGGATACGCTTGGGATGT
TGTCGGTATAGATATCGGTGGTTTTGGTGCCGCTAATTTGGCTGTTGACGAAAGTAATGGTGTTAACGAAGAAAATGAGT
TCTCTTTCTGGGGTAACAGTTGGGGGGCTGGTGGTGACGGTTTGTCTGAAAATGGTGCCAGCCTCTCGACTGCCGCACTG
AAACTTAAGTTTATGGATGGTGCAGTTACTGCAAAAGGTGGTTTTACTCAACTGAATGTACCAGGCATATTAGGCGTGAA
CTGGTCTTATCAGCCAGGTACCTACCGTGGTGGTCAAATCGAGGGAAACTTCGGTGGTCTCTACCTCACCTATGCTATTG
CAGACGAATACAAGGCTCCTTGGTTTAGAAATACCAATGGTTTCTCCAAAAGCAACCCGTATGCATCAGACTCATATTCA
GATGCTAACCAGATTGACTACATCCATGGCTTGGCAGCCCGTTATACCTTCGAAAACGGTACTGCTGTAACAGGCTCATA
TGGTCAGTCTGAAGGCTATATGGATAGCTATCATTTCAAACTTGCCCAGAAATTTGATGTGCTCGGTGGTCTTAATACCA
GTTATCAATTTTATGGCTCTGACACCGATAACAATGACTATGACGGTTTAGCTTGGCAGCAAGCATTGACTGCTGGTTGG
GCCATAGGGCCTTACGGCTTCCGTATTGAAGGTTTATGGACCAAAGCTGAAGGTGACCTCGGCAACTACCTGCCCCGCTT
GACCCGTGGCTACGGCAACTCCCAGGGCGCAAACGAAATCTGGTGGGATTCCCGTTCTGACTGGAACCACAATAATGAAA
AAGCATTATTTGCTGGTGTAAATCGTTCGCTGGATGATCTAGTAGGTGCACCAGGCTGGTCCGTCGGTGTCTCTGGTGCT
TATGGTTGGGATGCAGAAAACGGTGATGGTACTCGTACTGATGGCACAGAGTGGGCGGCCAACTTCGACGTCATGTACAC
GGTGCAAGATGGCAAGCTGAAAGGCACCCTGTTCAAATTGCACTACACAGATTACAACAACGAACAAGACGATAAGGGGA
GTTGGTATTATCCGAACATGTTCAGTTCCGAGCATGACGTCAAGTTCCACATCATAATGCCGTTCACCATACTGTAA

Upstream 100 bases:

>100_bases
TGCCCTACGGGGTCTTGATTGCAATGCCAATACCGAGCGGCGGGCCCTTGCCTGACTGCCGGACAAAAAGCTAAGTCCAT
AAAATCAGGAGCAATACAAA

Downstream 100 bases:

>100_bases
GCAGGCGGTGCAACCTCAGCAAACCGGGCCCCTTGGCCCGGTTTTCTTTTTGGCCGCACTCAGGCTACCATGCCCACCTT
GGCCACACTCAGGCCGCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MEKVIFKRAALSAAVVAALVAPGMAFAAQDMMSPTYGKSYEAFADDAKLSGGVFYFQRERDRKQAQDAHYNDKGEYVPAQ
DGKYHSNLSHSTAQLALNFNSGYAWDVVGIDIGGFGAANLAVDESNGVNEENEFSFWGNSWGAGGDGLSENGASLSTAAL
KLKFMDGAVTAKGGFTQLNVPGILGVNWSYQPGTYRGGQIEGNFGGLYLTYAIADEYKAPWFRNTNGFSKSNPYASDSYS
DANQIDYIHGLAARYTFENGTAVTGSYGQSEGYMDSYHFKLAQKFDVLGGLNTSYQFYGSDTDNNDYDGLAWQQALTAGW
AIGPYGFRIEGLWTKAEGDLGNYLPRLTRGYGNSQGANEIWWDSRSDWNHNNEKALFAGVNRSLDDLVGAPGWSVGVSGA
YGWDAENGDGTRTDGTEWAANFDVMYTVQDGKLKGTLFKLHYTDYNNEQDDKGSWYYPNMFSSEHDVKFHIIMPFTIL

Sequences:

>Translated_478_residues
MEKVIFKRAALSAAVVAALVAPGMAFAAQDMMSPTYGKSYEAFADDAKLSGGVFYFQRERDRKQAQDAHYNDKGEYVPAQ
DGKYHSNLSHSTAQLALNFNSGYAWDVVGIDIGGFGAANLAVDESNGVNEENEFSFWGNSWGAGGDGLSENGASLSTAAL
KLKFMDGAVTAKGGFTQLNVPGILGVNWSYQPGTYRGGQIEGNFGGLYLTYAIADEYKAPWFRNTNGFSKSNPYASDSYS
DANQIDYIHGLAARYTFENGTAVTGSYGQSEGYMDSYHFKLAQKFDVLGGLNTSYQFYGSDTDNNDYDGLAWQQALTAGW
AIGPYGFRIEGLWTKAEGDLGNYLPRLTRGYGNSQGANEIWWDSRSDWNHNNEKALFAGVNRSLDDLVGAPGWSVGVSGA
YGWDAENGDGTRTDGTEWAANFDVMYTVQDGKLKGTLFKLHYTDYNNEQDDKGSWYYPNMFSSEHDVKFHIIMPFTIL
>Mature_478_residues
MEKVIFKRAALSAAVVAALVAPGMAFAAQDMMSPTYGKSYEAFADDAKLSGGVFYFQRERDRKQAQDAHYNDKGEYVPAQ
DGKYHSNLSHSTAQLALNFNSGYAWDVVGIDIGGFGAANLAVDESNGVNEENEFSFWGNSWGAGGDGLSENGASLSTAAL
KLKFMDGAVTAKGGFTQLNVPGILGVNWSYQPGTYRGGQIEGNFGGLYLTYAIADEYKAPWFRNTNGFSKSNPYASDSYS
DANQIDYIHGLAARYTFENGTAVTGSYGQSEGYMDSYHFKLAQKFDVLGGLNTSYQFYGSDTDNNDYDGLAWQQALTAGW
AIGPYGFRIEGLWTKAEGDLGNYLPRLTRGYGNSQGANEIWWDSRSDWNHNNEKALFAGVNRSLDDLVGAPGWSVGVSGA
YGWDAENGDGTRTDGTEWAANFDVMYTVQDGKLKGTLFKLHYTDYNNEQDDKGSWYYPNMFSSEHDVKFHIIMPFTIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786897, Length=497, Percent_Identity=39.2354124748491, Blast_Score=295, Evalue=3e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 52428; Mature: 52428

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKVIFKRAALSAAVVAALVAPGMAFAAQDMMSPTYGKSYEAFADDAKLSGGVFYFQRER
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHCCCCCCCCCEEEEECHH
DRKQAQDAHYNDKGEYVPAQDGKYHSNLSHSTAQLALNFNSGYAWDVVGIDIGGFGAANL
HHHHHHHCCCCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCEE
AVDESNGVNEENEFSFWGNSWGAGGDGLSENGASLSTAALKLKFMDGAVTAKGGFTQLNV
EEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEECCCCEEEECC
PGILGVNWSYQPGTYRGGQIEGNFGGLYLTYAIADEYKAPWFRNTNGFSKSNPYASDSYS
CEEEECCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCC
DANQIDYIHGLAARYTFENGTAVTGSYGQSEGYMDSYHFKLAQKFDVLGGLNTSYQFYGS
CCCHHHHHHCEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
DTDNNDYDGLAWQQALTAGWAIGPYGFRIEGLWTKAEGDLGNYLPRLTRGYGNSQGANEI
CCCCCCCCCHHHHHHHHCCCEECCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCC
WWDSRSDWNHNNEKALFAGVNRSLDDLVGAPGWSVGVSGAYGWDAENGDGTRTDGTEWAA
CCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
NFDVMYTVQDGKLKGTLFKLHYTDYNNEQDDKGSWYYPNMFSSEHDVKFHIIMPFTIL
CEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCEEEEEEEEEEEC
>Mature Secondary Structure
MEKVIFKRAALSAAVVAALVAPGMAFAAQDMMSPTYGKSYEAFADDAKLSGGVFYFQRER
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHCCCCCCCCCEEEEECHH
DRKQAQDAHYNDKGEYVPAQDGKYHSNLSHSTAQLALNFNSGYAWDVVGIDIGGFGAANL
HHHHHHHCCCCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCEE
AVDESNGVNEENEFSFWGNSWGAGGDGLSENGASLSTAALKLKFMDGAVTAKGGFTQLNV
EEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEECCCCEEEECC
PGILGVNWSYQPGTYRGGQIEGNFGGLYLTYAIADEYKAPWFRNTNGFSKSNPYASDSYS
CEEEECCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCC
DANQIDYIHGLAARYTFENGTAVTGSYGQSEGYMDSYHFKLAQKFDVLGGLNTSYQFYGS
CCCHHHHHHCEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
DTDNNDYDGLAWQQALTAGWAIGPYGFRIEGLWTKAEGDLGNYLPRLTRGYGNSQGANEI
CCCCCCCCCHHHHHHHHCCCEECCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCC
WWDSRSDWNHNNEKALFAGVNRSLDDLVGAPGWSVGVSGAYGWDAENGDGTRTDGTEWAA
CCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
NFDVMYTVQDGKLKGTLFKLHYTDYNNEQDDKGSWYYPNMFSSEHDVKFHIIMPFTIL
CEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]