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The map label for this gene is ytbD [H]

Identifier: 145299644

GI number: 145299644

Start: 2915843

End: 2917015

Strand: Direct

Name: ytbD [H]

Synonym: ASA_2718

Alternate gene names: 145299644

Gene position: 2915843-2917015 (Clockwise)

Preceding gene: 145299643

Following gene: 145299648

Centisome position: 62.01

GC content: 63.85

Gene sequence:

>1173_bases
ATGCCACTGGCATTATTTGCCCTCACCCTGAGTGCCTTTGCGATCGGCACCACCGAGTTCGTGATCGTGGGGCTCATTCC
CACCATCGCCGAACAACTCAATGTCTCGCTCCCCTCGGCGGGCCTGCTGGTCAGCCTCTATGCAATGGGGGTCGCCATCG
GTGCCCCCGTGCTGACGGCGCTCACCGGCAAGCTGCCACGCAAGTGGCTGCTGGTGGGGCTGATGGCGCTCTTTACCGCC
GGTAACCTGCTGGCCTGGCAGGCTCCAGGCTACGAGAGCCTGATCGTTGCCCGCGTGCTGACCGGTCTGGCCCACGGGGT
CTTCTTCTCGGTGGGGAGCACCATAGCCACCGGCCTAGTGGCCAAAGAGAAGGCGGCGAGCGCCATCGCCATCATGTTCA
GCGGCCTGACAGTGGCGCTGGTAACCGGCGTGCCACTCGGCACCTGGATTGGTCAGGTATTTGGCTGGCGTGAAACCTTT
CTGGTAGTGAGCCTGCTCGGGGTCATCGCCATGGTGGGCAGCCTGCTGCTGATCCCGAGTAACCTGCCCAAGGGGACGGC
CTCAACCATCCGCGAACAGCTCGCTGTGCTGACCAAGAAACCGCTGCTGCTGGTGTATGCCAAGACAGCCCTGGGTTACG
GCGGCGCCTTCACCGCCTTTACTTTCCTCGCCCCCATCTTGCAGCAGGTGAGCGGCTTTGGTGCCGGTGCCGTGAGCCTG
ATCCTGCTGGTGTACGGTGTCTCTGTGGCCTTTGGCAATATCTGGGGTGGCAAGCTGGCAGACCGACTCGGCCCCCTGCC
CGCCCTGAAACTGCTGTTCGGTGGTCTGGCGCTGGTGTTGCTGGTGCTGACCTTCACTGCGCCACACCCTGTGCTGGCGG
TGCTGACCGTGCTGGTGTGGGGCGCCTTTGCCTTTGGCAACGTGCCAGGTTTGCAGGTGCTGGTGGTGCAACAGGCCGAG
CGCCATACCCCCAATGCGGTGGATGTCGCCTCCGGCCTCAACATCGCCGCCTTCAACGTCGGCATAGCACTGGGATCCGT
GGTGGGTGGCTTAGTGGTGGAACACCTGGGCCTGATGCACACCCCCTGGATTGGCGCCCTCATCGTGCTGCTGGCCTATG
GGCTGACCCATGTCAGCGAGCGCCGCGAAGCCAGACTGGCGCTGGCACTCTAA

Upstream 100 bases:

>100_bases
TTGGCAAAAGTAATTTGATGTCACCGTCATTTTTGCCAACAAAGTGACTCGGCATACTGGCCACCTTCTCCCGTCGGGAG
TCACTATCCAAGGAGTTTGT

Downstream 100 bases:

>100_bases
ACCCTTGTGCAGACAAAAGGCCGACACTGGGTGTCGGCCTTTTCCATATCCAAAAAAGCTATAGCGGACTCAAGACTCCT
TGAGATCCTCGTCAGCGGCC

Product: major facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MPLALFALTLSAFAIGTTEFVIVGLIPTIAEQLNVSLPSAGLLVSLYAMGVAIGAPVLTALTGKLPRKWLLVGLMALFTA
GNLLAWQAPGYESLIVARVLTGLAHGVFFSVGSTIATGLVAKEKAASAIAIMFSGLTVALVTGVPLGTWIGQVFGWRETF
LVVSLLGVIAMVGSLLLIPSNLPKGTASTIREQLAVLTKKPLLLVYAKTALGYGGAFTAFTFLAPILQQVSGFGAGAVSL
ILLVYGVSVAFGNIWGGKLADRLGPLPALKLLFGGLALVLLVLTFTAPHPVLAVLTVLVWGAFAFGNVPGLQVLVVQQAE
RHTPNAVDVASGLNIAAFNVGIALGSVVGGLVVEHLGLMHTPWIGALIVLLAYGLTHVSERREARLALAL

Sequences:

>Translated_390_residues
MPLALFALTLSAFAIGTTEFVIVGLIPTIAEQLNVSLPSAGLLVSLYAMGVAIGAPVLTALTGKLPRKWLLVGLMALFTA
GNLLAWQAPGYESLIVARVLTGLAHGVFFSVGSTIATGLVAKEKAASAIAIMFSGLTVALVTGVPLGTWIGQVFGWRETF
LVVSLLGVIAMVGSLLLIPSNLPKGTASTIREQLAVLTKKPLLLVYAKTALGYGGAFTAFTFLAPILQQVSGFGAGAVSL
ILLVYGVSVAFGNIWGGKLADRLGPLPALKLLFGGLALVLLVLTFTAPHPVLAVLTVLVWGAFAFGNVPGLQVLVVQQAE
RHTPNAVDVASGLNIAAFNVGIALGSVVGGLVVEHLGLMHTPWIGALIVLLAYGLTHVSERREARLALAL
>Mature_389_residues
PLALFALTLSAFAIGTTEFVIVGLIPTIAEQLNVSLPSAGLLVSLYAMGVAIGAPVLTALTGKLPRKWLLVGLMALFTAG
NLLAWQAPGYESLIVARVLTGLAHGVFFSVGSTIATGLVAKEKAASAIAIMFSGLTVALVTGVPLGTWIGQVFGWRETFL
VVSLLGVIAMVGSLLLIPSNLPKGTASTIREQLAVLTKKPLLLVYAKTALGYGGAFTAFTFLAPILQQVSGFGAGAVSLI
LLVYGVSVAFGNIWGGKLADRLGPLPALKLLFGGLALVLLVLTFTAPHPVLAVLTVLVWGAFAFGNVPGLQVLVVQQAER
HTPNAVDVASGLNIAAFNVGIALGSVVGGLVVEHLGLMHTPWIGALIVLLAYGLTHVSERREARLALAL

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=385, Percent_Identity=43.1168831168831, Blast_Score=242, Evalue=4e-65,
Organism=Escherichia coli, GI1786595, Length=361, Percent_Identity=30.1939058171745, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1787808, Length=366, Percent_Identity=28.9617486338798, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI145693198, Length=361, Percent_Identity=24.9307479224377, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40248; Mature: 40117

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLALFALTLSAFAIGTTEFVIVGLIPTIAEQLNVSLPSAGLLVSLYAMGVAIGAPVLTA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LTGKLPRKWLLVGLMALFTAGNLLAWQAPGYESLIVARVLTGLAHGVFFSVGSTIATGLV
HHHCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKEKAASAIAIMFSGLTVALVTGVPLGTWIGQVFGWRETFLVVSLLGVIAMVGSLLLIPS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
NLPKGTASTIREQLAVLTKKPLLLVYAKTALGYGGAFTAFTFLAPILQQVSGFGAGAVSL
CCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
ILLVYGVSVAFGNIWGGKLADRLGPLPALKLLFGGLALVLLVLTFTAPHPVLAVLTVLVW
HHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GAFAFGNVPGLQVLVVQQAERHTPNAVDVASGLNIAAFNVGIALGSVVGGLVVEHLGLMH
HHHHHCCCCCCEEEEEEHHHCCCCCHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHC
TPWIGALIVLLAYGLTHVSERREARLALAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PLALFALTLSAFAIGTTEFVIVGLIPTIAEQLNVSLPSAGLLVSLYAMGVAIGAPVLTA
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LTGKLPRKWLLVGLMALFTAGNLLAWQAPGYESLIVARVLTGLAHGVFFSVGSTIATGLV
HHHCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKEKAASAIAIMFSGLTVALVTGVPLGTWIGQVFGWRETFLVVSLLGVIAMVGSLLLIPS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
NLPKGTASTIREQLAVLTKKPLLLVYAKTALGYGGAFTAFTFLAPILQQVSGFGAGAVSL
CCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
ILLVYGVSVAFGNIWGGKLADRLGPLPALKLLFGGLALVLLVLTFTAPHPVLAVLTVLVW
HHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GAFAFGNVPGLQVLVVQQAERHTPNAVDVASGLNIAAFNVGIALGSVVGGLVVEHLGLMH
HHHHHCCCCCCEEEEEEHHHCCCCCHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHC
TPWIGALIVLLAYGLTHVSERREARLALAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]