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The map label for this gene is ybcJ [H]

Identifier: 145299240

GI number: 145299240

Start: 2407780

End: 2408013

Strand: Direct

Name: ybcJ [H]

Synonym: ASA_2282

Alternate gene names: 145299240

Gene position: 2407780-2408013 (Clockwise)

Preceding gene: 145299239

Following gene: 145299244

Centisome position: 51.2

GC content: 58.55

Gene sequence:

>234_bases
ATGGAGACGTTTCTGCTCGAAGGCCACCCCTTCGTTGCCTTGTGTGACCTTATCAAGCATCAGGGTTGGGCCGATTGTGG
CGGCGCGGCCAAGGCGCTCGTCGCCGACGGTCTGGTGGAAGTGGACGGTCAGGTCGAGACCCGCAAACGCTGCAAGATAG
TGGCCGAGCAAGTGGTCAACTTCAACGGCATGAAAGTCGTGGTAAAAGAGGGCGTAAGCCCTGAGATCCTCTGA

Upstream 100 bases:

>100_bases
TTTATGATGCCTTCTCTACCCCGCCCTTTCATTGCTGGCCTGAACTGCCTAAAATACTCGCCCTGCTGTTTCAGCCATTC
ATCCATCTAGAGGATTTCCC

Downstream 100 bases:

>100_bases
TCCCCGCAAGCACTACCAGCAGATCAGAAAAATGACCTAGTCAGTGGCTGGCATCCGCGACATGACAGTCGTGATGCAAG
CGGAACCGAGCCAGAAGACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 77

Protein sequence:

>77_residues
METFLLEGHPFVALCDLIKHQGWADCGGAAKALVADGLVEVDGQVETRKRCKIVAEQVVNFNGMKVVVKEGVSPEIL

Sequences:

>Translated_77_residues
METFLLEGHPFVALCDLIKHQGWADCGGAAKALVADGLVEVDGQVETRKRCKIVAEQVVNFNGMKVVVKEGVSPEIL
>Mature_77_residues
METFLLEGHPFVALCDLIKHQGWADCGGAAKALVADGLVEVDGQVETRKRCKIVAEQVVNFNGMKVVVKEGVSPEIL

Specific function: Its structure and the presence of conserved basic residues indicates that it probably binds RNA [H]

COG id: COG2501

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081752, Length=68, Percent_Identity=58.8235294117647, Blast_Score=81, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8309; Mature: 8309

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METFLLEGHPFVALCDLIKHQGWADCGGAAKALVADGLVEVDGQVETRKRCKIVAEQVVN
CCCEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHC
FNGMKVVVKEGVSPEIL
CCCEEEEEECCCCCCCC
>Mature Secondary Structure
METFLLEGHPFVALCDLIKHQGWADCGGAAKALVADGLVEVDGQVETRKRCKIVAEQVVN
CCCEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHC
FNGMKVVVKEGVSPEIL
CCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 1748668; 7567469 [H]