Click here to switch to the map view.

The map label for this gene is lytH [H]

Identifier: 145297086

GI number: 145297086

Start: 3306589

End: 3307779

Strand: Direct

Name: lytH [H]

Synonym: cgR_2982

Alternate gene names: 145297086

Gene position: 3306589-3307779 (Clockwise)

Preceding gene: 145297085

Following gene: NA

Centisome position: 99.77

GC content: 57.51

Gene sequence:

>1191_bases
GTGTCTAAAGTCCTGAGAGTTGGCGATCGCAGCCCGCGCGTGGCAGAAGTGCGCACTACGCTCGCTCGCCTCGGTGTGAT
TGAAGGCTATTCCAGGGAGATGTCTGCAAAGACAGAATCCCAGAAGTTCCACGAAGAAGAGACGCTTTTCGACGAAGAAC
TCAGCCTCAGCATCAAGTCATTCCAGCAAGCTCGAGGAGTCGTTCCCTCCGGGCTTATTGACGACCTCACCCTGCGCGCA
ATCCGCGAAGCCTCCTACACCCTGGGAACCCGCGTGCTGGCCTACCAGCCCGGCAACCAGCTTGTTGGTGACGACGTTGT
AGAAATCCAATCCCATCTCCAAGAGCTCGGCTTCTACGCCGACCGTGTGGATGGACATTTTGGCGAGCTCACACACAAAG
CTGTGATGAACTACCAACTGAACTACGGCATGCAGGTAGACGGCATCTGTGGTCCTGACACCATCCGAGCACTGTCCCGA
CTGGGTCTGCGCATCAAGGGTGGCTCTGCTCAAGCCATCCGTGAGCGCGAACGCATGCGCAATGCAGGCCCACGTCTTGC
TGGCAAGCGTGTGGTCATTGATCCTGCGCTTGGGGGCTCCAACAAGGGTCAGATCGTGAAAGGCCCCTACGGTGAGATCT
CTGAGGAAGAAATCCTCTGGGATTTGGCCACCCGCCTGGAAGGTCGCATGATCGCAACAGGCATGGAAACCATCCTGTCG
CGCCCGCACATGGATGATCCCAGCAGCCGTGATCGCGCGTCGATCGCGAATGCTTTCGGCGCTGACCTCATGCTGAGCCT
GCACTGCGATTCCTACCCGAATGAAAAAGCTAACGGCGTGGCCAGCTTCTACTTCGGTTCGGAAAACGGCACCAACTCCT
TGACCGGTGAAACGCTCTCCGCGTACATCCAAAAAGAGATCGTTGCCCGCACCCCGCTGAACAACTGTGGCAGCCATGCC
CGTACCTGGGATCTGCTGCGCCTCACGCGCATGCCCATGGTGGAAGTTGTCACCGGTTACCTCACCAACCCCGATGACCT
GGCAGTTCTGACTGATCCACAAATGCGTGATCACATTGCCGAAGCCATCGTTGTCGCCGTCAAGCGCCTGTACCTCCTTG
ATGAGGAAGCACAGCCCAAGACCGGAACCTTCAAGTTCTCTGAGCTGTTGCAATCAGAGCAGGCTGGCTAA

Upstream 100 bases:

>100_bases
GAAAAACTAGAGAAGCACCTCTAACTGGTATTCTTACTGCAGTCACGTGGATGAACTATATCCATTGATAATTTTGAACA
TGAATGATGGAAGGAGCAGG

Downstream 100 bases:

>100_bases
ATCGCGCCCATCTCTTGAAGGAGTCGCTGGGCATCCTTGGCTGTGAGCAGCACCGTTGCGGGTGGTAATTCCATCCGCAG
ACGGGGTAACACGGGATGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSKVLRVGDRSPRVAEVRTTLARLGVIEGYSREMSAKTESQKFHEEETLFDEELSLSIKSFQQARGVVPSGLIDDLTLRA
IREASYTLGTRVLAYQPGNQLVGDDVVEIQSHLQELGFYADRVDGHFGELTHKAVMNYQLNYGMQVDGICGPDTIRALSR
LGLRIKGGSAQAIRERERMRNAGPRLAGKRVVIDPALGGSNKGQIVKGPYGEISEEEILWDLATRLEGRMIATGMETILS
RPHMDDPSSRDRASIANAFGADLMLSLHCDSYPNEKANGVASFYFGSENGTNSLTGETLSAYIQKEIVARTPLNNCGSHA
RTWDLLRLTRMPMVEVVTGYLTNPDDLAVLTDPQMRDHIAEAIVVAVKRLYLLDEEAQPKTGTFKFSELLQSEQAG

Sequences:

>Translated_396_residues
MSKVLRVGDRSPRVAEVRTTLARLGVIEGYSREMSAKTESQKFHEEETLFDEELSLSIKSFQQARGVVPSGLIDDLTLRA
IREASYTLGTRVLAYQPGNQLVGDDVVEIQSHLQELGFYADRVDGHFGELTHKAVMNYQLNYGMQVDGICGPDTIRALSR
LGLRIKGGSAQAIRERERMRNAGPRLAGKRVVIDPALGGSNKGQIVKGPYGEISEEEILWDLATRLEGRMIATGMETILS
RPHMDDPSSRDRASIANAFGADLMLSLHCDSYPNEKANGVASFYFGSENGTNSLTGETLSAYIQKEIVARTPLNNCGSHA
RTWDLLRLTRMPMVEVVTGYLTNPDDLAVLTDPQMRDHIAEAIVVAVKRLYLLDEEAQPKTGTFKFSELLQSEQAG
>Mature_395_residues
SKVLRVGDRSPRVAEVRTTLARLGVIEGYSREMSAKTESQKFHEEETLFDEELSLSIKSFQQARGVVPSGLIDDLTLRAI
REASYTLGTRVLAYQPGNQLVGDDVVEIQSHLQELGFYADRVDGHFGELTHKAVMNYQLNYGMQVDGICGPDTIRALSRL
GLRIKGGSAQAIRERERMRNAGPRLAGKRVVIDPALGGSNKGQIVKGPYGEISEEEILWDLATRLEGRMIATGMETILSR
PHMDDPSSRDRASIANAFGADLMLSLHCDSYPNEKANGVASFYFGSENGTNSLTGETLSAYIQKEIVARTPLNNCGSHAR
TWDLLRLTRMPMVEVVTGYLTNPDDLAVLTDPQMRDHIAEAIVVAVKRLYLLDEEAQPKTGTFKFSELLQSEQAG

Specific function: Probably involved in cell-wall metabolism [H]

COG id: COG0860

COG function: function code M; N-acetylmuramoyl-L-alanine amidase

Gene ontology:

Cell location: Secreted (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017273
- InterPro:   IPR002508
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]

EC number: 3.5.1.28

Molecular weight: Translated: 43706; Mature: 43575

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVLRVGDRSPRVAEVRTTLARLGVIEGYSREMSAKTESQKFHEEETLFDEELSLSIKS
CCCCEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQQARGVVPSGLIDDLTLRAIREASYTLGTRVLAYQPGNQLVGDDVVEIQSHLQELGFYA
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
DRVDGHFGELTHKAVMNYQLNYGMQVDGICGPDTIRALSRLGLRIKGGSAQAIRERERMR
HHHCCHHHHHHHHHHHHEEECCCEEECCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHHH
NAGPRLAGKRVVIDPALGGSNKGQIVKGPYGEISEEEILWDLATRLEGRMIATGMETILS
HCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCEEEHHHHHHHHC
RPHMDDPSSRDRASIANAFGADLMLSLHCDSYPNEKANGVASFYFGSENGTNSLTGETLS
CCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHH
AYIQKEIVARTPLNNCGSHARTWDLLRLTRMPMVEVVTGYLTNPDDLAVLTDPQMRDHIA
HHHHHHHHHHCCCHHCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEECCHHHHHHH
EAIVVAVKRLYLLDEEAQPKTGTFKFSELLQSEQAG
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
SKVLRVGDRSPRVAEVRTTLARLGVIEGYSREMSAKTESQKFHEEETLFDEELSLSIKS
CCCEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQQARGVVPSGLIDDLTLRAIREASYTLGTRVLAYQPGNQLVGDDVVEIQSHLQELGFYA
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
DRVDGHFGELTHKAVMNYQLNYGMQVDGICGPDTIRALSRLGLRIKGGSAQAIRERERMR
HHHCCHHHHHHHHHHHHEEECCCEEECCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHHH
NAGPRLAGKRVVIDPALGGSNKGQIVKGPYGEISEEEILWDLATRLEGRMIATGMETILS
HCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCEEEHHHHHHHHC
RPHMDDPSSRDRASIANAFGADLMLSLHCDSYPNEKANGVASFYFGSENGTNSLTGETLS
CCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHH
AYIQKEIVARTPLNNCGSHARTWDLLRLTRMPMVEVVTGYLTNPDDLAVLTDPQMRDHIA
HHHHHHHHHHCCCHHCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEECCHHHHHHH
EAIVVAVKRLYLLDEEAQPKTGTFKFSELLQSEQAG
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Carboxylic acid amide hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA