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The map label for this gene is rtcB [H]

Identifier: 145296991

GI number: 145296991

Start: 3206205

End: 3207356

Strand: Direct

Name: rtcB [H]

Synonym: cgR_2890

Alternate gene names: 145296991

Gene position: 3206205-3207356 (Clockwise)

Preceding gene: 145296990

Following gene: 145296994

Centisome position: 96.74

GC content: 55.3

Gene sequence:

>1152_bases
ATGAATCATGTTGTTAATTTTGCTTCACATTTGGAAGACGCAGCCCTGAAGCAAGCCGAAGCTACTGCCACCATGCCGTT
TATTTACCCGCATGTGGCGTTGATGCCTGATGCTCACTTTGGGTTGGGTTCATCGGTGGGAACGGTGTTCGGCACCAAGG
GTGCGATCATTCCGGCGGCTGTGGGTGTGGATATAGGTTGCGGAATGATAGGAGTGTGTACCAATTACACGGCCTCTGAC
CTGGAGGGACGTGATTTGGTGACGCTTCGGGATTACATCGAGCGGGTGATTCCGTTGTCTCCTGGAAATTACAATTCCAC
CACCTTGAAGGAAACCGCGAAGGTGAAGGTCGCGGAGTTGGAGGAGCTCGCGGAGCGCGATGGTGTGGATTTGTCGCACT
CTCCGACGTGGAAGCGCCAGTTGGGTTCGCTTGGTGGAGGTAATCACTTCATTGAGTTGTGTCTTGATGAGTTGGATCGG
GTGTGGATGTTTTTGCACTCTGGTTCCCGTGGTGTGGGTAATAAAATTGCGCAGAAGCACATCAAGATCGCGCAGGCTGA
GTGTAAGAATGAGGAGCTTCCCGATAAGGATCTTGCGTACTTGACCGAGGGGACTGAGGAGTTTGAGTCTTACATCAAGG
AACTGAATTGGGCGCAGCGTTTTGCGTTCCTCAACAGGGAAGAAATGATGGACAGATTCGCACGGGAGCTGGGTTTTTTC
GTCGAAAAGCAGCTTGAAGAGGTCGAGCGCATCAACTGCCACCACAACTACACGGTCCGGGAGGAGCACTACGGCGAGAC
CATTTGGCTCACCCGTAAGGGTGCCGTGTTGGCGGACGAAGGCACGCCGGCGTTGATTCCGGGGTCGATGGGCACCGCGT
CGTACGTGGTCAGTGGCAAGGGCAACGCCGAGGCACTGCGGTCGGCGCCGCACGGGGCGGGCCGGAGGATGTCGCGCAAC
CAAGCTAAAAAGCGCTTCTCGACGGCCGACCTGGATTCTCGGATGGCGGGCATTGTCTACCGGCCCGGCAAGGAGTGGAT
CGATGAAATTCCCGACGCTTACAAAGACATCGATCAGGTGATGGCCGATGCTGCCGATTTGGTGACAATTCGCCATAAAT
TGCGCCAGATCGTCAACGTGAAAGGCACCTAG

Upstream 100 bases:

>100_bases
TCTAAAAACACATTTTTAAGCCCTCCCGGCGCAGCTGAAAACTCAGTCGCCGGGAGGGCTTTTTTGTACCCGAATTTGTA
CCCGAATTTAAGGAATCGCT

Downstream 100 bases:

>100_bases
TTTTCCTTAAGGGTGCTCGAGCTTCAACAACCACTGTTTCGCTTCCAAGCCACCTCGGTATCCGCCTAAAGCTCCATCAG
TGCGCAACACTCTGTGGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MNHVVNFASHLEDAALKQAEATATMPFIYPHVALMPDAHFGLGSSVGTVFGTKGAIIPAAVGVDIGCGMIGVCTNYTASD
LEGRDLVTLRDYIERVIPLSPGNYNSTTLKETAKVKVAELEELAERDGVDLSHSPTWKRQLGSLGGGNHFIELCLDELDR
VWMFLHSGSRGVGNKIAQKHIKIAQAECKNEELPDKDLAYLTEGTEEFESYIKELNWAQRFAFLNREEMMDRFARELGFF
VEKQLEEVERINCHHNYTVREEHYGETIWLTRKGAVLADEGTPALIPGSMGTASYVVSGKGNAEALRSAPHGAGRRMSRN
QAKKRFSTADLDSRMAGIVYRPGKEWIDEIPDAYKDIDQVMADAADLVTIRHKLRQIVNVKGT

Sequences:

>Translated_383_residues
MNHVVNFASHLEDAALKQAEATATMPFIYPHVALMPDAHFGLGSSVGTVFGTKGAIIPAAVGVDIGCGMIGVCTNYTASD
LEGRDLVTLRDYIERVIPLSPGNYNSTTLKETAKVKVAELEELAERDGVDLSHSPTWKRQLGSLGGGNHFIELCLDELDR
VWMFLHSGSRGVGNKIAQKHIKIAQAECKNEELPDKDLAYLTEGTEEFESYIKELNWAQRFAFLNREEMMDRFARELGFF
VEKQLEEVERINCHHNYTVREEHYGETIWLTRKGAVLADEGTPALIPGSMGTASYVVSGKGNAEALRSAPHGAGRRMSRN
QAKKRFSTADLDSRMAGIVYRPGKEWIDEIPDAYKDIDQVMADAADLVTIRHKLRQIVNVKGT
>Mature_383_residues
MNHVVNFASHLEDAALKQAEATATMPFIYPHVALMPDAHFGLGSSVGTVFGTKGAIIPAAVGVDIGCGMIGVCTNYTASD
LEGRDLVTLRDYIERVIPLSPGNYNSTTLKETAKVKVAELEELAERDGVDLSHSPTWKRQLGSLGGGNHFIELCLDELDR
VWMFLHSGSRGVGNKIAQKHIKIAQAECKNEELPDKDLAYLTEGTEEFESYIKELNWAQRFAFLNREEMMDRFARELGFF
VEKQLEEVERINCHHNYTVREEHYGETIWLTRKGAVLADEGTPALIPGSMGTASYVVSGKGNAEALRSAPHGAGRRMSRN
QAKKRFSTADLDSRMAGIVYRPGKEWIDEIPDAYKDIDQVMADAADLVTIRHKLRQIVNVKGT

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=442, Percent_Identity=27.6018099547511, Blast_Score=119, Evalue=7e-27,
Organism=Escherichia coli, GI2367224, Length=391, Percent_Identity=48.3375959079284, Blast_Score=336, Evalue=2e-93,
Organism=Caenorhabditis elegans, GI17506665, Length=446, Percent_Identity=27.3542600896861, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24585217, Length=446, Percent_Identity=27.5784753363229, Blast_Score=102, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 42469; Mature: 42469

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHVVNFASHLEDAALKQAEATATMPFIYPHVALMPDAHFGLGSSVGTVFGTKGAIIPAA
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEECCCCCCCCCCCHHHHHCCCCCEEHHH
VGVDIGCGMIGVCTNYTASDLEGRDLVTLRDYIERVIPLSPGNYNSTTLKETAKVKVAEL
HCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
EELAERDGVDLSHSPTWKRQLGSLGGGNHFIELCLDELDRVWMFLHSGSRGVGNKIAQKH
HHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IKIAQAECKNEELPDKDLAYLTEGTEEFESYIKELNWAQRFAFLNREEMMDRFARELGFF
HHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
VEKQLEEVERINCHHNYTVREEHYGETIWLTRKGAVLADEGTPALIPGSMGTASYVVSGK
HHHHHHHHHHHCCCCCCEECHHHCCCEEEEEECCCEEECCCCCEEECCCCCCCEEEEECC
GNAEALRSAPHGAGRRMSRNQAKKRFSTADLDSRMAGIVYRPGKEWIDEIPDAYKDIDQV
CCHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHCCEEECCCHHHHHHCCHHHHHHHHH
MADAADLVTIRHKLRQIVNVKGT
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNHVVNFASHLEDAALKQAEATATMPFIYPHVALMPDAHFGLGSSVGTVFGTKGAIIPAA
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEECCCCCCCCCCCHHHHHCCCCCEEHHH
VGVDIGCGMIGVCTNYTASDLEGRDLVTLRDYIERVIPLSPGNYNSTTLKETAKVKVAEL
HCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
EELAERDGVDLSHSPTWKRQLGSLGGGNHFIELCLDELDRVWMFLHSGSRGVGNKIAQKH
HHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IKIAQAECKNEELPDKDLAYLTEGTEEFESYIKELNWAQRFAFLNREEMMDRFARELGFF
HHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
VEKQLEEVERINCHHNYTVREEHYGETIWLTRKGAVLADEGTPALIPGSMGTASYVVSGK
HHHHHHHHHHHCCCCCCEECHHHCCCEEEEEECCCEEECCCCCEEECCCCCCCEEEEECC
GNAEALRSAPHGAGRRMSRNQAKKRFSTADLDSRMAGIVYRPGKEWIDEIPDAYKDIDQV
CCHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHCCEEECCCHHHHHHCCHHHHHHHHH
MADAADLVTIRHKLRQIVNVKGT
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]