Click here to switch to the map view.

The map label for this gene is ydhO [C]

Identifier: 145296150

GI number: 145296150

Start: 2283971

End: 2284606

Strand: Reverse

Name: ydhO [C]

Synonym: cgR_2070

Alternate gene names: 145296150

Gene position: 2284606-2283971 (Counterclockwise)

Preceding gene: 145296151

Following gene: 145296149

Centisome position: 68.93

GC content: 57.86

Gene sequence:

>636_bases
GTGGGTAAGCACCGTCGCAACAATTCAAACGCAACTCGCAAGGCTGTAGCAGCATCTGCAGTTGCGCTTGGAGCAACCGC
AGCTATCGCCTCCCCAGCACAGGCAGCTGAGGTTGTTGTTCCTGGCACCGGAATCAGCGTTGACATCGCTGGCATCGAGA
CCACTCCAGGTCTTAACAACGTTCCAGGAATCGATCAGTGGATCCCTTCCCTTAGCAGCCAGGCAGCTCCTACTGCTTAC
GCAGCCGTCATTGATGCACCTGCAGCAGAGGCACAGGCTGCACCTGCAGCAAGCACCGGTCAGGCAATCGTTGATGCAGC
GCGCACCAAGATTGGTTCGCCATACGGTTGGGGTGCTACCGGTCCTAACGCTTTCGACTGCTCCGGCCTTACCTCATGGG
CATACAGCCAGGTTGGCAAGTCCATCCCACGTACCTCCCAGGCTCAGGCTGCACAGGGCACCCCTGTTGCTTACTCTGAC
CTTCAGGCTGGCGACATCGTTGCGTTCTACTCCGGCGCTACCCACGTTGGTATCTACTCCGGCCACGGCACCGTTATCCA
CGCACTGAACAGCAGCACCCCGCTGTCTGAGCACTCCTTGGATTACATGCCATTCCACTCTGCAGTTCGTTTCTAA

Upstream 100 bases:

>100_bases
GGTTCTCTCGCAGAGAGAGAAGGAGTGGGGATAGGGGCCTTCCGCTCCGAACCCGACAGCTAACTCGGTCAGCAAACAGG
AAGAATTTGGAGTTTCATCA

Downstream 100 bases:

>100_bases
TCTGCATAAAGTCTTTAAGCTTTTGAAGCAAGCCGCACTCCTTGAAAAAGTTGAGAGCGGCTTGCTTCTTTTCCTTGGCT
AGGCTTTCGTGATCGGGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MGKHRRNNSNATRKAVAASAVALGATAAIASPAQAAEVVVPGTGISVDIAGIETTPGLNNVPGIDQWIPSLSSQAAPTAY
AAVIDAPAAEAQAAPAASTGQAIVDAARTKIGSPYGWGATGPNAFDCSGLTSWAYSQVGKSIPRTSQAQAAQGTPVAYSD
LQAGDIVAFYSGATHVGIYSGHGTVIHALNSSTPLSEHSLDYMPFHSAVRF

Sequences:

>Translated_211_residues
MGKHRRNNSNATRKAVAASAVALGATAAIASPAQAAEVVVPGTGISVDIAGIETTPGLNNVPGIDQWIPSLSSQAAPTAY
AAVIDAPAAEAQAAPAASTGQAIVDAARTKIGSPYGWGATGPNAFDCSGLTSWAYSQVGKSIPRTSQAQAAQGTPVAYSD
LQAGDIVAFYSGATHVGIYSGHGTVIHALNSSTPLSEHSLDYMPFHSAVRF
>Mature_210_residues
GKHRRNNSNATRKAVAASAVALGATAAIASPAQAAEVVVPGTGISVDIAGIETTPGLNNVPGIDQWIPSLSSQAAPTAYA
AVIDAPAAEAQAAPAASTGQAIVDAARTKIGSPYGWGATGPNAFDCSGLTSWAYSQVGKSIPRTSQAQAAQGTPVAYSDL
QAGDIVAFYSGATHVGIYSGHGTVIHALNSSTPLSEHSLDYMPFHSAVRF

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Secreted

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family

Homologues:

Organism=Escherichia coli, GI1787944, Length=132, Percent_Identity=34.0909090909091, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2070_CORGB (A4QFQ3)

Other databases:

- EMBL:   AP009044
- RefSeq:   YP_001138971.1
- ProteinModelPortal:   A4QFQ3
- SMR:   A4QFQ3
- STRING:   A4QFQ3
- MEROPS:   C40.006
- GeneID:   4992673
- GenomeReviews:   AP009044_GR
- KEGG:   cgt:cgR_2070
- eggNOG:   COG0791
- HOGENOM:   HBG362075
- OMA:   VGKSIPR
- ProtClustDB:   CLSK633673
- InterPro:   IPR000064

Pfam domain/function: PF00877 NLPC_P60

EC number: NA

Molecular weight: Translated: 21245; Mature: 21113

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKHRRNNSNATRKAVAASAVALGATAAIASPAQAAEVVVPGTGISVDIAGIETTPGLNN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCCCCC
VPGIDQWIPSLSSQAAPTAYAAVIDAPAAEAQAAPAASTGQAIVDAARTKIGSPYGWGAT
CCCHHHHHHHHCCCCCCHHEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCC
GPNAFDCSGLTSWAYSQVGKSIPRTSQAQAAQGTPVAYSDLQAGDIVAFYSGATHVGIYS
CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCEECCCCCCCEEEEECCCCEEEEEC
GHGTVIHALNSSTPLSEHSLDYMPFHSAVRF
CCCEEEEEECCCCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
GKHRRNNSNATRKAVAASAVALGATAAIASPAQAAEVVVPGTGISVDIAGIETTPGLNN
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCCCCC
VPGIDQWIPSLSSQAAPTAYAAVIDAPAAEAQAAPAASTGQAIVDAARTKIGSPYGWGAT
CCCHHHHHHHHCCCCCCHHEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCC
GPNAFDCSGLTSWAYSQVGKSIPRTSQAQAAQGTPVAYSDLQAGDIVAFYSGATHVGIYS
CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCEECCCCCCCEEEEECCCCEEEEEC
GHGTVIHALNSSTPLSEHSLDYMPFHSAVRF
CCCEEEEEECCCCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA