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The map label for this gene is ribD [H]

Identifier: 145295718

GI number: 145295718

Start: 1830456

End: 1831442

Strand: Reverse

Name: ribD [H]

Synonym: cgR_1645

Alternate gene names: 145295718

Gene position: 1831442-1830456 (Counterclockwise)

Preceding gene: 145295719

Following gene: 145295717

Centisome position: 55.26

GC content: 57.85

Gene sequence:

>987_bases
ATGGATATTGCGCACGCGTTAGATCTGGCCCACCACGCGTCAGATCAAGTCCGAGGCACCACCAGCCCTAATCCGCCAGT
CGGCGCTGTCATTTTGGACGCCGACGGCGAGGTCGTTGGCGTTGGCGCCACGGCACCTCCTGGTGGCCCGCACGCCGAAG
TGGTGGCGCTTGCAGCTGCCGGAGCGCGTGCCAACGGGGGCACGGCGGTGGTCACCCTCGAGCCGTGCAACCATTACGGC
CGCACGGGTCCATGTTCCAAGGCGCTTCTCGACGCCGGGATCGCACACGTGTTTTACGCCAATGCGGATCCCTTCCCGTC
AGCCGCTGGGGGCGGTGCCTTTTTGGCGGAGGCGGGCGTCGATACGCATTTTTTAGATGAGCGGATCAGAGTACTGGAGC
CCTGGTTGCAGGCGACGCGTCTGGGCAGGCCCCATGTCACGTTGAAATTTGCCTCCACTGTGGACGGTTTTGCCGGTGCC
ACCGATGGCACCAGCCAGTGGATTACCGGGCCGGACGCGCGGGCGTTTGTGCACGAAGATCGAAGTAAAAGAGATGCGAT
CATCGTGGGCACCGGTACTGCGTTGACTGATAATCCCTCTTTGACGGCGCGTACGGAAGATGGTCTTTATGAAAATCAAC
CCAGGCGCGTTGTTATTGGCTCCCGCGAGGTTCCAGCAGATTCCAACTTGGCTCGCTTGGGTTATGAACAGTATGCGGGA
ATACCAGAGGCTTTATCAGTGCTGTGGGATAAAGGGTGCCGAGACATTTTAATCGAAGGTGGCCCAACGTTAGCTGGGGC
AGCGCTGCGCTTAGGAATTGTCGATCAGGTGCAGGCATATGTTGCCCCCGCTTTGTTGGGCGCTGGACGATCAGTGATTA
ACTGGCCACAAGAAACCACAATGGATCAGATTATGCGTTTTGACACCACGTCCGTGAGACAGTTGGGTTCAGATGTATTG
ATAGAAATGATGAGAAAGGAACACTAA

Upstream 100 bases:

>100_bases
TGCCGACGCTGGCGTGGATGCCTTCGTTGCAGGTTCCGCTGTGTACGGCGCTGAGGATCCCAACAAGGCGATCCAGGAGT
TGCGAGCACTCGCGCACTAA

Downstream 100 bases:

>100_bases
ATGTTCACAGGTATCGTCGAGGAGCTTGGCTCCGTTGCAGGCGTGGAACATCTGGGAGATTCCATCCGGATGCAGATTTC
CGCGTCCACCGTTTTAGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MDIAHALDLAHHASDQVRGTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAAGARANGGTAVVTLEPCNHYG
RTGPCSKALLDAGIAHVFYANADPFPSAAGGGAFLAEAGVDTHFLDERIRVLEPWLQATRLGRPHVTLKFASTVDGFAGA
TDGTSQWITGPDARAFVHEDRSKRDAIIVGTGTALTDNPSLTARTEDGLYENQPRRVVIGSREVPADSNLARLGYEQYAG
IPEALSVLWDKGCRDILIEGGPTLAGAALRLGIVDQVQAYVAPALLGAGRSVINWPQETTMDQIMRFDTTSVRQLGSDVL
IEMMRKEH

Sequences:

>Translated_328_residues
MDIAHALDLAHHASDQVRGTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAAGARANGGTAVVTLEPCNHYG
RTGPCSKALLDAGIAHVFYANADPFPSAAGGGAFLAEAGVDTHFLDERIRVLEPWLQATRLGRPHVTLKFASTVDGFAGA
TDGTSQWITGPDARAFVHEDRSKRDAIIVGTGTALTDNPSLTARTEDGLYENQPRRVVIGSREVPADSNLARLGYEQYAG
IPEALSVLWDKGCRDILIEGGPTLAGAALRLGIVDQVQAYVAPALLGAGRSVINWPQETTMDQIMRFDTTSVRQLGSDVL
IEMMRKEH
>Mature_328_residues
MDIAHALDLAHHASDQVRGTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAAGARANGGTAVVTLEPCNHYG
RTGPCSKALLDAGIAHVFYANADPFPSAAGGGAFLAEAGVDTHFLDERIRVLEPWLQATRLGRPHVTLKFASTVDGFAGA
TDGTSQWITGPDARAFVHEDRSKRDAIIVGTGTALTDNPSLTARTEDGLYENQPRRVVIGSREVPADSNLARLGYEQYAG
IPEALSVLWDKGCRDILIEGGPTLAGAALRLGIVDQVQAYVAPALLGAGRSVINWPQETTMDQIMRFDTTSVRQLGSDVL
IEMMRKEH

Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]

COG id: COG1985

COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the HTP reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786616, Length=365, Percent_Identity=37.2602739726027, Blast_Score=194, Evalue=5e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193
- InterPro:   IPR004794
- InterPro:   IPR002734 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]

EC number: =3.5.4.26; =1.1.1.193 [H]

Molecular weight: Translated: 34437; Mature: 34437

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIAHALDLAHHASDQVRGTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAA
CCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCHHEEEEEEC
GARANGGTAVVTLEPCNHYGRTGPCSKALLDAGIAHVFYANADPFPSAAGGGAFLAEAGV
CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEECCCC
DTHFLDERIRVLEPWLQATRLGRPHVTLKFASTVDGFAGATDGTSQWITGPDARAFVHED
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
RSKRDAIIVGTGTALTDNPSLTARTEDGLYENQPRRVVIGSREVPADSNLARLGYEQYAG
CCCCCEEEEECCCEECCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCHHHHCHHHHCC
IPEALSVLWDKGCRDILIEGGPTLAGAALRLGIVDQVQAYVAPALLGAGRSVINWPQETT
CHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHH
MDQIMRFDTTSVRQLGSDVLIEMMRKEH
HHHHHHCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDIAHALDLAHHASDQVRGTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAA
CCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCHHEEEEEEC
GARANGGTAVVTLEPCNHYGRTGPCSKALLDAGIAHVFYANADPFPSAAGGGAFLAEAGV
CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEECCCC
DTHFLDERIRVLEPWLQATRLGRPHVTLKFASTVDGFAGATDGTSQWITGPDARAFVHED
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
RSKRDAIIVGTGTALTDNPSLTARTEDGLYENQPRRVVIGSREVPADSNLARLGYEQYAG
CCCCCEEEEECCCEECCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCHHHHCHHHHCC
IPEALSVLWDKGCRDILIEGGPTLAGAALRLGIVDQVQAYVAPALLGAGRSVINWPQETT
CHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHH
MDQIMRFDTTSVRQLGSDVLIEMMRKEH
HHHHHHCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA