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The map label for this gene is ydiF [H]

Identifier: 145295680

GI number: 145295680

Start: 1781739

End: 1783370

Strand: Reverse

Name: ydiF [H]

Synonym: cgR_1607

Alternate gene names: 145295680

Gene position: 1783370-1781739 (Counterclockwise)

Preceding gene: 145295681

Following gene: 145295679

Centisome position: 53.81

GC content: 59.93

Gene sequence:

>1632_bases
GTGATTGTCACCAATGATTTAGAGGTGCGCGTTGGCGCACGTACCCTTCTCGATGCCCCAGGTCAGCTCCTTCGGGTACA
GCCAGGCGACCGTATCGGCCTGGTTGGTAGAAATGGTGCGGGCAAAACCACCACCATGCGAATCCTCTCGGGCGAAACCA
AGCCCTACGGAGGATCCGTAACTACATCTGGTGAAATCGGCTACCTGCCCCAGGATTCCCGCGAAGGTAACATCGAACAA
ACCGCCCGCGACCGAGTTCTCTCCGCCCGCGGTCTTGACCAGCTACGATCCTCTATGGAACGCCAGCAGGAGATCATGGA
AACCGCGACCGACCCCGGCAAGCTCGACGCCGCGATCCGCAAGTACTCCAGGCTCGAGGAGCAATTCCAGTCGCTCGGTG
GCTACGAAGCTGACGCCGAAGCAGCCCAGATCTGCGACAACCTCGGCCTCGAGGCACGCATCCTCGACCAGCAGCTTAAA
ACCCTGTCCGGCGGCCAGCGCCGTCGCGTCGAGCTGGCGCAGATCCTCTTCGCCGCCACCAACGGCTCCGGCAAATCAAA
AACCACATTGCTTCTCGACGAGCCCACCAACCACTTGGACGCAGACTCGATCACCTGGCTCCGTGACTTCCTGGCGAAGC
ACGAAGGTGGACTGATCATGATTTCGCACGACGTCGAACTGCTTGGCGCCGTATGTAACAAGATTTGGTACCTCGACGCA
GTGCGCAGCGAAGCCGATGTCTACAACATGGGCTTTGCCAAATATGTCGATGCACGTGCACTCGATGAAGCACGCCGACG
CCGTGAGCGCGCAAACGCCGAGAAGAAAGCCGGAGCCCTCAAGGATCAAGCTGCACGCCTCGGCGCGAAAGCAACTAAGG
CTGCCGCAGCTAAGCAGATGATCGCCCGTGCGGAACGCATGATCGACAACCTCGATGAAATCCGCGTAGCCGACCGCGCC
GCCAACATCGTCTTCCCAGAACCAGCCCCCTGCGGAAAAACCCCACTGAACGCCAAGGGACTGACCAAGATGTACGGCTC
CCTCGAAGTCTTCGCAGGCGTCGACCTAGCCATCGACAAAGGCTCCCGCGTAGTCGTCCTCGGATTCAACGGTGCAGGTA
AAACCACCCTGCTTAAACTCCTCGCCGGCGTCGAACGCACCGACGGCGAAGGCGGCATCGTCACCGGATACGGCCTTAAA
ATCGGCTACTTCGCCCAGGAACACGACACCATCGACCCCGACAAATCCGTCTGGCAAAACACCATCGAAGCCTGCGCCGA
CGCCGACCAACAAAGCCTCCGCAGCCTCCTTGGATCCTTCATGTTCTCTGGAGAACAACTCGACCAACCAGCAGGAACAC
TCTCCGGCGGTGAAAAAACCCGCCTCGCACTGGCCACCCTCGTGTCCTCCCGCGCAAACGTCCTGCTTCTCGACGAGCCC
ACCAACAACCTTGACCCCATCTCCCGCGAACAGGTCCTCGACGCACTACGCACCTACACCGGCGCAGTCGTCCTGGTTAC
CCACGACCCGGGTGCAGTCAAGGCCCTTGAGCCAGAACGCGTCATCGTGCTTCCCGACGGCACCGAGGATCTTTGGAATG
ATAACTACATGGAGATTGTGGAGCTGGCTTAG

Upstream 100 bases:

>100_bases
TCGTCGGTGCAGTCCTCGGATTGCTTAAGTTGTAGGTGGCTGGGGGCGTCGAAAAGCAGCTTTATTGACCTGGCAACTTC
AATTGATAGACTGTTCGGTT

Downstream 100 bases:

>100_bases
TTTTTAAGTCTGTTTGTACAGGTCAGAAAGTCTCAAAAAAGGGGCGCTCTTCTTGCTAATTGCTACAAGAAGAGCGCCCT
TTTTGGTGCAATGAGAACTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MIVTNDLEVRVGARTLLDAPGQLLRVQPGDRIGLVGRNGAGKTTTMRILSGETKPYGGSVTTSGEIGYLPQDSREGNIEQ
TARDRVLSARGLDQLRSSMERQQEIMETATDPGKLDAAIRKYSRLEEQFQSLGGYEADAEAAQICDNLGLEARILDQQLK
TLSGGQRRRVELAQILFAATNGSGKSKTTLLLDEPTNHLDADSITWLRDFLAKHEGGLIMISHDVELLGAVCNKIWYLDA
VRSEADVYNMGFAKYVDARALDEARRRRERANAEKKAGALKDQAARLGAKATKAAAAKQMIARAERMIDNLDEIRVADRA
ANIVFPEPAPCGKTPLNAKGLTKMYGSLEVFAGVDLAIDKGSRVVVLGFNGAGKTTLLKLLAGVERTDGEGGIVTGYGLK
IGYFAQEHDTIDPDKSVWQNTIEACADADQQSLRSLLGSFMFSGEQLDQPAGTLSGGEKTRLALATLVSSRANVLLLDEP
TNNLDPISREQVLDALRTYTGAVVLVTHDPGAVKALEPERVIVLPDGTEDLWNDNYMEIVELA

Sequences:

>Translated_543_residues
MIVTNDLEVRVGARTLLDAPGQLLRVQPGDRIGLVGRNGAGKTTTMRILSGETKPYGGSVTTSGEIGYLPQDSREGNIEQ
TARDRVLSARGLDQLRSSMERQQEIMETATDPGKLDAAIRKYSRLEEQFQSLGGYEADAEAAQICDNLGLEARILDQQLK
TLSGGQRRRVELAQILFAATNGSGKSKTTLLLDEPTNHLDADSITWLRDFLAKHEGGLIMISHDVELLGAVCNKIWYLDA
VRSEADVYNMGFAKYVDARALDEARRRRERANAEKKAGALKDQAARLGAKATKAAAAKQMIARAERMIDNLDEIRVADRA
ANIVFPEPAPCGKTPLNAKGLTKMYGSLEVFAGVDLAIDKGSRVVVLGFNGAGKTTLLKLLAGVERTDGEGGIVTGYGLK
IGYFAQEHDTIDPDKSVWQNTIEACADADQQSLRSLLGSFMFSGEQLDQPAGTLSGGEKTRLALATLVSSRANVLLLDEP
TNNLDPISREQVLDALRTYTGAVVLVTHDPGAVKALEPERVIVLPDGTEDLWNDNYMEIVELA
>Mature_543_residues
MIVTNDLEVRVGARTLLDAPGQLLRVQPGDRIGLVGRNGAGKTTTMRILSGETKPYGGSVTTSGEIGYLPQDSREGNIEQ
TARDRVLSARGLDQLRSSMERQQEIMETATDPGKLDAAIRKYSRLEEQFQSLGGYEADAEAAQICDNLGLEARILDQQLK
TLSGGQRRRVELAQILFAATNGSGKSKTTLLLDEPTNHLDADSITWLRDFLAKHEGGLIMISHDVELLGAVCNKIWYLDA
VRSEADVYNMGFAKYVDARALDEARRRRERANAEKKAGALKDQAARLGAKATKAAAAKQMIARAERMIDNLDEIRVADRA
ANIVFPEPAPCGKTPLNAKGLTKMYGSLEVFAGVDLAIDKGSRVVVLGFNGAGKTTLLKLLAGVERTDGEGGIVTGYGLK
IGYFAQEHDTIDPDKSVWQNTIEACADADQQSLRSLLGSFMFSGEQLDQPAGTLSGGEKTRLALATLVSSRANVLLLDEP
TNNLDPISREQVLDALRTYTGAVVLVTHDPGAVKALEPERVIVLPDGTEDLWNDNYMEIVELA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=517, Percent_Identity=29.4003868471954, Blast_Score=189, Evalue=6e-48,
Organism=Homo sapiens, GI10947137, Length=495, Percent_Identity=28.8888888888889, Blast_Score=179, Evalue=5e-45,
Organism=Homo sapiens, GI27881506, Length=496, Percent_Identity=29.4354838709677, Blast_Score=179, Evalue=8e-45,
Organism=Homo sapiens, GI10947135, Length=501, Percent_Identity=30.3393213572854, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI69354671, Length=501, Percent_Identity=30.3393213572854, Blast_Score=150, Evalue=3e-36,
Organism=Homo sapiens, GI116734710, Length=228, Percent_Identity=29.3859649122807, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI31657092, Length=213, Percent_Identity=27.6995305164319, Blast_Score=70, Evalue=7e-12,
Organism=Escherichia coli, GI1789751, Length=519, Percent_Identity=34.8747591522158, Blast_Score=250, Evalue=1e-67,
Organism=Escherichia coli, GI1787041, Length=548, Percent_Identity=33.3941605839416, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI2367384, Length=526, Percent_Identity=31.1787072243346, Blast_Score=222, Evalue=5e-59,
Organism=Escherichia coli, GI1787182, Length=504, Percent_Identity=30.952380952381, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI87081782, Length=562, Percent_Identity=25.6227758007117, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788225, Length=202, Percent_Identity=29.2079207920792, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787758, Length=202, Percent_Identity=28.2178217821782, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1789672, Length=218, Percent_Identity=26.1467889908257, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=33.0143540669856, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787792, Length=210, Percent_Identity=27.1428571428571, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789873, Length=211, Percent_Identity=30.3317535545024, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787105, Length=202, Percent_Identity=29.7029702970297, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI48995001, Length=216, Percent_Identity=28.7037037037037, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1789593, Length=194, Percent_Identity=30.4123711340206, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=495, Percent_Identity=30.5050505050505, Blast_Score=192, Evalue=3e-49,
Organism=Caenorhabditis elegans, GI17559834, Length=546, Percent_Identity=27.2893772893773, Blast_Score=178, Evalue=6e-45,
Organism=Caenorhabditis elegans, GI17553372, Length=529, Percent_Identity=29.3005671077505, Blast_Score=163, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI17565586, Length=237, Percent_Identity=28.2700421940928, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6320874, Length=522, Percent_Identity=27.3946360153257, Blast_Score=176, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6321121, Length=535, Percent_Identity=28.5981308411215, Blast_Score=168, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6325030, Length=415, Percent_Identity=26.5060240963855, Blast_Score=110, Evalue=8e-25,
Organism=Saccharomyces cerevisiae, GI6324314, Length=168, Percent_Identity=34.5238095238095, Blast_Score=84, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6323278, Length=166, Percent_Identity=30.7228915662651, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24666836, Length=528, Percent_Identity=31.4393939393939, Blast_Score=213, Evalue=3e-55,
Organism=Drosophila melanogaster, GI24642252, Length=497, Percent_Identity=30.1810865191147, Blast_Score=197, Evalue=2e-50,
Organism=Drosophila melanogaster, GI18859989, Length=497, Percent_Identity=30.1810865191147, Blast_Score=197, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24641342, Length=499, Percent_Identity=32.4649298597194, Blast_Score=189, Evalue=3e-48,
Organism=Drosophila melanogaster, GI24666092, Length=221, Percent_Identity=30.316742081448, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI221512771, Length=210, Percent_Identity=30, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 58837; Mature: 58837

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVTNDLEVRVGARTLLDAPGQLLRVQPGDRIGLVGRNGAGKTTTMRILSGETKPYGGSV
CEECCCCEEEECCHHHHCCCCCEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCE
TTSGEIGYLPQDSREGNIEQTARDRVLSARGLDQLRSSMERQQEIMETATDPGKLDAAIR
ECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
KYSRLEEQFQSLGGYEADAEAAQICDNLGLEARILDQQLKTLSGGQRRRVELAQILFAAT
HHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
NGSGKSKTTLLLDEPTNHLDADSITWLRDFLAKHEGGLIMISHDVELLGAVCNKIWYLDA
CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
VRSEADVYNMGFAKYVDARALDEARRRRERANAEKKAGALKDQAARLGAKATKAAAAKQM
HHCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHCCHHHHHHHHHHH
IARAERMIDNLDEIRVADRAANIVFPEPAPCGKTPLNAKGLTKMYGSLEVFAGVDLAIDK
HHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCEEEECC
GSRVVVLGFNGAGKTTLLKLLAGVERTDGEGGIVTGYGLKIGYFAQEHDTIDPDKSVWQN
CCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCHHHHHH
TIEACADADQQSLRSLLGSFMFSGEQLDQPAGTLSGGEKTRLALATLVSSRANVLLLDEP
HHHHHHCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC
TNNLDPISREQVLDALRTYTGAVVLVTHDPGAVKALEPERVIVLPDGTEDLWNDNYMEIV
CCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEECCCEEEEEECCCHHHCCCCCEEEE
ELA
ECC
>Mature Secondary Structure
MIVTNDLEVRVGARTLLDAPGQLLRVQPGDRIGLVGRNGAGKTTTMRILSGETKPYGGSV
CEECCCCEEEECCHHHHCCCCCEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCE
TTSGEIGYLPQDSREGNIEQTARDRVLSARGLDQLRSSMERQQEIMETATDPGKLDAAIR
ECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
KYSRLEEQFQSLGGYEADAEAAQICDNLGLEARILDQQLKTLSGGQRRRVELAQILFAAT
HHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
NGSGKSKTTLLLDEPTNHLDADSITWLRDFLAKHEGGLIMISHDVELLGAVCNKIWYLDA
CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
VRSEADVYNMGFAKYVDARALDEARRRRERANAEKKAGALKDQAARLGAKATKAAAAKQM
HHCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHCCHHHHHHHHHHH
IARAERMIDNLDEIRVADRAANIVFPEPAPCGKTPLNAKGLTKMYGSLEVFAGVDLAIDK
HHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCEEEECC
GSRVVVLGFNGAGKTTLLKLLAGVERTDGEGGIVTGYGLKIGYFAQEHDTIDPDKSVWQN
CCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCHHHHHH
TIEACADADQQSLRSLLGSFMFSGEQLDQPAGTLSGGEKTRLALATLVSSRANVLLLDEP
HHHHHHCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC
TNNLDPISREQVLDALRTYTGAVVLVTHDPGAVKALEPERVIVLPDGTEDLWNDNYMEIV
CCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEECCCEEEEEECCCHHHCCCCCEEEE
ELA
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]