| Definition | Corynebacterium glutamicum R chromosome, complete genome. |
|---|---|
| Accession | NC_009342 |
| Length | 3,314,179 |
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The map label for this gene is nedA [H]
Identifier: 145295681
GI number: 145295681
Start: 1783436
End: 1786165
Strand: Reverse
Name: nedA [H]
Synonym: cgR_1608
Alternate gene names: 145295681
Gene position: 1786165-1783436 (Counterclockwise)
Preceding gene: 145295683
Following gene: 145295680
Centisome position: 53.89
GC content: 53.19
Gene sequence:
>2730_bases TTGTCTCGACGTAAAGCAGTATTCTCAGCGCTTGGTGCAGCCGCACTCATCGGCGCAGCACTACCCACCATCCCAACGGC CCAAGCTCAAACACCCACGGGCTACGGATTCGATGCAACAGCAAGCATCGGCGAAGAACCAGAGTTTTCAACACAACAAC TCGCTGACGGCGGAACTCTCGGTTTTGATTGCTACCGCATCCCATCGCTTGGCGTCGCACCCAACGGCAACGTCCTCGCA TCGTGGGATGGTCGCCCAAACAACTGTTCAGATGCTCCGCAACCCAACTCCATCGTGGGCAAGGTATCGACCGACAACGG AGCAACCTGGGGCGAACAGCACGACATTTCCGCAGGTATCACCGCCGAACCCAAAACTGGCTATTCCGATCCCAGCATCG TTGTGGACTGGGAGAGGGGCGATGTCTTTAACTTCCACGTGAAGTCATTCGATGCAGGATACTTCACCTCCCAACCAGGC ACGGACCCGGATGATCGCAACGTTGCCCATGTTGCCTACGCCAAATCATCAGATAACGGCTCAACCTGGGTTGCAGACAC CGTCATTACTGATCAAGTGGTTGCTGATGACACCTGGGACAGCCGATTTGCCACATCCGGAAACGGCATCCAACTGCAAT ACGGCGCGTACAAGGGGCGATTGGTTCAGCCATCGGTAACTCGCATGACCAATGGTCGGGTCGCAGCAGTTGCCATGCTG AGTGATGATCACGGCACAACGTGGTACCCCAGTGCTCCTTGGGGAAACTCCATGGATGAAAACAAAATCGTGGAACTCAG CGATGGAACCCTGATGAACAACAGTCGTTCATCAGGAGCCGATACTTACCGCAAGGTGTCTTATTCCACCGACGGCGGCG TCACTTGGACCGAGCCAACTCTTGATACCCAGCTGCCGGATCCTCGCAACAATGCTTCCCTGATTCGAGTATTCCCGACA GCACCTGAGGGAAGTGCGCAGGCAAAGGTTCTGCTGTTCTCCAACACTGCCACCACGAGTGGCCGCACCAATGGTACCGT CCGCATGTCGTGTGATGATGGTCAGACCTGGCCGGTGTCCAAGGTGTTTGAACCAGGCGCAATCCAATACACCTCGATGG CAACGCTTCCCAACGGTGACATCGGCATGCTGTGGGAAAACAGTGGCTCAAATATCGACATCTTCTACTCACAGTTCAAC CTGTCGTGGCTGGAGGCCGGCTGCATTGGTGTCGACGCCGATGAAACGCCCGTGACTGCAGGTGAAACCACCACTATGAA TGTCACGTTGACCAATCCTTTCGCCAACGCAATTTTTGACCGAGCAGTCTCCCTTGAACTTCCCGAAGGATGGCAAGCTG AGGATGTTCGTGTGTCGATCCCATCTGGAGAATCTGTCACAATCCCAGTCCAGGTCACAGCACCGCTGGTAGCCGACAAC GGTGAACTTCCAGTGGAGGTGTCCATTCTTGATGGAGCAGACCGCTACACGGGTCGTCTCAATCTCACTGTTCAGGGTGG GCAAGAACCTGCATCAACTTCAGTGAAGGTGAGCATTCCAAATCTCAAGGACACTTATGTAGCAGGGGAGAAGATCAGCA TTAACTTTGCGGTCAACAACCCGTTTGACGTTACGGTTAATTCGGTGCCAAGCCTGGGGGAAGGCGAGAACTGGATGCCT GCAAACCTACGCGGATTCGATCCAGAACAGGGTGCTCCAAACTGTCGCTACAGAAATTTGGGTGCGAACCAAAGCTACAA CTGCACCACAACTACCTATGAAGTCAGCGATTCGGATGTGGAACGCGGATATGTCGATATTCCAACGGTATGGACCTTTA CTAACTCCGCAGGCGAAACGGTATGGTCCAAAAACGTTGATGTGCCTCGAATTGAACTCAATGGAACACAGGATGCTGTC ACTGATGCAATCGTAACGGTTGATCCCATCAACCCAGTTCATTCCAACGGCCAGAGCCAAACTGTTGAGGTCCAGGCTAA TGTCACCTCAGAGGGAGATCTGCCAGCTGGATCTAAGGTGGCCTTTTATCTAGATTCATCACCCATTGATGCCGCAGCTG TTGATGCGGAAGGGCATGCCAGCATCTCGATTGATGTCGACAACATCGCAAGCGAGCAGCCTGAACGCACATTTGAGGTT CGCGCCCGACTCGTCGTTCCAGAAGATGCACCACGATCAATCGCGCGTGATGCCTTGGCACGTTTTACAGTCCTCCCTGA ACAAGTGCAGCAGAACTCCTTGGTGATCATGAATCATCCAGATGTGGTTTCTGATGGACAAACAAAGACTATTGTCATCG CAGTGAAGGCGACAGCACACGATGGATCGCCGGTGGCTATCGGTACTCTCATTACATTTCGCGTCAATGGTATTGAGCGG GATGTGGTTCCAACTAACGCGCAAGGGACCGCAAAGCTTCAGCTAGACCTCAAGCCAGTAAATACTGAAGATGAAGAATA TGAAGTAACTGTTGAAGCCGAGCTGGATGAATTGACTGCTCAGACCACGTTCAAAGTACTTGCTGGTGAGGAGGAGGAAC CCACCAGCACCGAAGAACAACCGTCAGAAACTGAGCAGCCTTCTGAACCTGAAGAGGAACCGACTGCTCCTACTGGAAGC TCTAATGGTGGCAGTTTTGCTGCGCTTTTAGCGCTGCTGGCAGCGCTTGGTGGCATCGTCGGTGCAGTCCTCGGATTGCT TAAGTTGTAG
Upstream 100 bases:
>100_bases CTGGTGGGTGAAGTGGGGGAGGCATGTCTATGCCCCCAATTAGACATCTGACATCATACTTCCAATCTGGATGGGTCTTC CATTCAAGAAAGCAGGTCCT
Downstream 100 bases:
>100_bases GTGGCTGGGGGCGTCGAAAAGCAGCTTTATTGACCTGGCAACTTCAATTGATAGACTGTTCGGTTGTGATTGTCACCAAT GATTTAGAGGTGCGCGTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: Neuraminidase [H]
Number of amino acids: Translated: 909; Mature: 908
Protein sequence:
>909_residues MSRRKAVFSALGAAALIGAALPTIPTAQAQTPTGYGFDATASIGEEPEFSTQQLADGGTLGFDCYRIPSLGVAPNGNVLA SWDGRPNNCSDAPQPNSIVGKVSTDNGATWGEQHDISAGITAEPKTGYSDPSIVVDWERGDVFNFHVKSFDAGYFTSQPG TDPDDRNVAHVAYAKSSDNGSTWVADTVITDQVVADDTWDSRFATSGNGIQLQYGAYKGRLVQPSVTRMTNGRVAAVAML SDDHGTTWYPSAPWGNSMDENKIVELSDGTLMNNSRSSGADTYRKVSYSTDGGVTWTEPTLDTQLPDPRNNASLIRVFPT APEGSAQAKVLLFSNTATTSGRTNGTVRMSCDDGQTWPVSKVFEPGAIQYTSMATLPNGDIGMLWENSGSNIDIFYSQFN LSWLEAGCIGVDADETPVTAGETTTMNVTLTNPFANAIFDRAVSLELPEGWQAEDVRVSIPSGESVTIPVQVTAPLVADN GELPVEVSILDGADRYTGRLNLTVQGGQEPASTSVKVSIPNLKDTYVAGEKISINFAVNNPFDVTVNSVPSLGEGENWMP ANLRGFDPEQGAPNCRYRNLGANQSYNCTTTTYEVSDSDVERGYVDIPTVWTFTNSAGETVWSKNVDVPRIELNGTQDAV TDAIVTVDPINPVHSNGQSQTVEVQANVTSEGDLPAGSKVAFYLDSSPIDAAAVDAEGHASISIDVDNIASEQPERTFEV RARLVVPEDAPRSIARDALARFTVLPEQVQQNSLVIMNHPDVVSDGQTKTIVIAVKATAHDGSPVAIGTLITFRVNGIER DVVPTNAQGTAKLQLDLKPVNTEDEEYEVTVEAELDELTAQTTFKVLAGEEEEPTSTEEQPSETEQPSEPEEEPTAPTGS SNGGSFAALLALLAALGGIVGAVLGLLKL
Sequences:
>Translated_909_residues MSRRKAVFSALGAAALIGAALPTIPTAQAQTPTGYGFDATASIGEEPEFSTQQLADGGTLGFDCYRIPSLGVAPNGNVLA SWDGRPNNCSDAPQPNSIVGKVSTDNGATWGEQHDISAGITAEPKTGYSDPSIVVDWERGDVFNFHVKSFDAGYFTSQPG TDPDDRNVAHVAYAKSSDNGSTWVADTVITDQVVADDTWDSRFATSGNGIQLQYGAYKGRLVQPSVTRMTNGRVAAVAML SDDHGTTWYPSAPWGNSMDENKIVELSDGTLMNNSRSSGADTYRKVSYSTDGGVTWTEPTLDTQLPDPRNNASLIRVFPT APEGSAQAKVLLFSNTATTSGRTNGTVRMSCDDGQTWPVSKVFEPGAIQYTSMATLPNGDIGMLWENSGSNIDIFYSQFN LSWLEAGCIGVDADETPVTAGETTTMNVTLTNPFANAIFDRAVSLELPEGWQAEDVRVSIPSGESVTIPVQVTAPLVADN GELPVEVSILDGADRYTGRLNLTVQGGQEPASTSVKVSIPNLKDTYVAGEKISINFAVNNPFDVTVNSVPSLGEGENWMP ANLRGFDPEQGAPNCRYRNLGANQSYNCTTTTYEVSDSDVERGYVDIPTVWTFTNSAGETVWSKNVDVPRIELNGTQDAV TDAIVTVDPINPVHSNGQSQTVEVQANVTSEGDLPAGSKVAFYLDSSPIDAAAVDAEGHASISIDVDNIASEQPERTFEV RARLVVPEDAPRSIARDALARFTVLPEQVQQNSLVIMNHPDVVSDGQTKTIVIAVKATAHDGSPVAIGTLITFRVNGIER DVVPTNAQGTAKLQLDLKPVNTEDEEYEVTVEAELDELTAQTTFKVLAGEEEEPTSTEEQPSETEQPSEPEEEPTAPTGS SNGGSFAALLALLAALGGIVGAVLGLLKL >Mature_908_residues SRRKAVFSALGAAALIGAALPTIPTAQAQTPTGYGFDATASIGEEPEFSTQQLADGGTLGFDCYRIPSLGVAPNGNVLAS WDGRPNNCSDAPQPNSIVGKVSTDNGATWGEQHDISAGITAEPKTGYSDPSIVVDWERGDVFNFHVKSFDAGYFTSQPGT DPDDRNVAHVAYAKSSDNGSTWVADTVITDQVVADDTWDSRFATSGNGIQLQYGAYKGRLVQPSVTRMTNGRVAAVAMLS DDHGTTWYPSAPWGNSMDENKIVELSDGTLMNNSRSSGADTYRKVSYSTDGGVTWTEPTLDTQLPDPRNNASLIRVFPTA PEGSAQAKVLLFSNTATTSGRTNGTVRMSCDDGQTWPVSKVFEPGAIQYTSMATLPNGDIGMLWENSGSNIDIFYSQFNL SWLEAGCIGVDADETPVTAGETTTMNVTLTNPFANAIFDRAVSLELPEGWQAEDVRVSIPSGESVTIPVQVTAPLVADNG ELPVEVSILDGADRYTGRLNLTVQGGQEPASTSVKVSIPNLKDTYVAGEKISINFAVNNPFDVTVNSVPSLGEGENWMPA NLRGFDPEQGAPNCRYRNLGANQSYNCTTTTYEVSDSDVERGYVDIPTVWTFTNSAGETVWSKNVDVPRIELNGTQDAVT DAIVTVDPINPVHSNGQSQTVEVQANVTSEGDLPAGSKVAFYLDSSPIDAAAVDAEGHASISIDVDNIASEQPERTFEVR ARLVVPEDAPRSIARDALARFTVLPEQVQQNSLVIMNHPDVVSDGQTKTIVIAVKATAHDGSPVAIGTLITFRVNGIERD VVPTNAQGTAKLQLDLKPVNTEDEEYEVTVEAELDELTAQTTFKVLAGEEEEPTSTEEQPSETEQPSEPEEEPTAPTGSS NGGSFAALLALLAALGGIVGAVLGLLKL
Specific function: To release sialic acids for use as carbon and energy sources for this non-pathogenic bacterium while in pathogenic microorganisms, sialidases have been suggested to be pathogenic factors [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 F5/8 type C domain [H]
Homologues:
Organism=Homo sapiens, GI4557791, Length=353, Percent_Identity=28.328611898017, Blast_Score=75, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018905 - InterPro: IPR002860 - InterPro: IPR000421 - InterPro: IPR008979 - InterPro: IPR013783 - InterPro: IPR014756 - InterPro: IPR011040 - InterPro: IPR006311 [H]
Pfam domain/function: PF02012 BNR; PF00754 F5_F8_type_C; PF10633 NPCBM_assoc [H]
EC number: =3.2.1.18 [H]
Molecular weight: Translated: 96617; Mature: 96486
Theoretical pI: Translated: 4.01; Mature: 4.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRRKAVFSALGAAALIGAALPTIPTAQAQTPTGYGFDATASIGEEPEFSTQQLADGGTL CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC GFDCYRIPSLGVAPNGNVLASWDGRPNNCSDAPQPNSIVGKVSTDNGATWGEQHDISAGI CEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC TAEPKTGYSDPSIVVDWERGDVFNFHVKSFDAGYFTSQPGTDPDDRNVAHVAYAKSSDNG EECCCCCCCCCCEEEEECCCCEEEEEEEEECCCEECCCCCCCCCCCCEEEEEEEECCCCC STWVADTVITDQVVADDTWDSRFATSGNGIQLQYGAYKGRLVQPSVTRMTNGRVAAVAML CEEEEEEEEECEEEECCCCCCCEEECCCCEEEEECCCCCEEECCHHHHCCCCCEEEEEEE SDDHGTTWYPSAPWGNSMDENKIVELSDGTLMNNSRSSGADTYRKVSYSTDGGVTWTEPT ECCCCCEECCCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCEEEEEECCCCCEEECCCC LDTQLPDPRNNASLIRVFPTAPEGSAQAKVLLFSNTATTSGRTNGTVRMSCDDGQTWPVS CCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCHH KVFEPGAIQYTSMATLPNGDIGMLWENSGSNIDIFYSQFNLSWLEAGCIGVDADETPVTA HHCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCEEEECCEEECCCCCCCCCC GETTTMNVTLTNPFANAIFDRAVSLELPEGWQAEDVRVSIPSGESVTIPVQVTAPLVADN CCEEEEEEEECCHHHHHHHHCEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEEEEEECC GELPVEVSILDGADRYTGRLNLTVQGGQEPASTSVKVSIPNLKDTYVAGEKISINFAVNN CCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCEEECCCEEEEEEEECC PFDVTVNSVPSLGEGENWMPANLRGFDPEQGAPNCRYRNLGANQSYNCTTTTYEVSDSDV CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCC ERGYVDIPTVWTFTNSAGETVWSKNVDVPRIELNGTQDAVTDAIVTVDPINPVHSNGQSQ CCCEEECCEEEEEECCCCCEEECCCCCCCEEEECCCHHHHCEEEEEECCCCHHHCCCCCE TVEVQANVTSEGDLPAGSKVAFYLDSSPIDAAAVDAEGHASISIDVDNIASEQPERTFEV EEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEHHHCCCCCCCCEEEE RARLVVPEDAPRSIARDALARFTVLPEQVQQNSLVIMNHPDVVSDGQTKTIVIAVKATAH EEEEECCCCCHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCCCCCEEEEEEEEEECC DGSPVAIGTLITFRVNGIERDVVPTNAQGTAKLQLDLKPVNTEDEEYEVTVEAELDELTA CCCCEEEEEEEEEEECCCEECCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECHHHHHH QTTFKVLAGEEEEPTSTEEQPSETEQPSEPEEEPTAPTGSSNGGSFAALLALLAALGGIV HEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH GAVLGLLKL HHHHHHHCC >Mature Secondary Structure SRRKAVFSALGAAALIGAALPTIPTAQAQTPTGYGFDATASIGEEPEFSTQQLADGGTL CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC GFDCYRIPSLGVAPNGNVLASWDGRPNNCSDAPQPNSIVGKVSTDNGATWGEQHDISAGI CEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC TAEPKTGYSDPSIVVDWERGDVFNFHVKSFDAGYFTSQPGTDPDDRNVAHVAYAKSSDNG EECCCCCCCCCCEEEEECCCCEEEEEEEEECCCEECCCCCCCCCCCCEEEEEEEECCCCC STWVADTVITDQVVADDTWDSRFATSGNGIQLQYGAYKGRLVQPSVTRMTNGRVAAVAML CEEEEEEEEECEEEECCCCCCCEEECCCCEEEEECCCCCEEECCHHHHCCCCCEEEEEEE SDDHGTTWYPSAPWGNSMDENKIVELSDGTLMNNSRSSGADTYRKVSYSTDGGVTWTEPT ECCCCCEECCCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCEEEEEECCCCCEEECCCC LDTQLPDPRNNASLIRVFPTAPEGSAQAKVLLFSNTATTSGRTNGTVRMSCDDGQTWPVS CCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCHH KVFEPGAIQYTSMATLPNGDIGMLWENSGSNIDIFYSQFNLSWLEAGCIGVDADETPVTA HHCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCEEEECCEEECCCCCCCCCC GETTTMNVTLTNPFANAIFDRAVSLELPEGWQAEDVRVSIPSGESVTIPVQVTAPLVADN CCEEEEEEEECCHHHHHHHHCEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEEEEEECC GELPVEVSILDGADRYTGRLNLTVQGGQEPASTSVKVSIPNLKDTYVAGEKISINFAVNN CCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCEEECCCEEEEEEEECC PFDVTVNSVPSLGEGENWMPANLRGFDPEQGAPNCRYRNLGANQSYNCTTTTYEVSDSDV CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCC ERGYVDIPTVWTFTNSAGETVWSKNVDVPRIELNGTQDAVTDAIVTVDPINPVHSNGQSQ CCCEEECCEEEEEECCCCCEEECCCCCCCEEEECCCHHHHCEEEEEECCCCHHHCCCCCE TVEVQANVTSEGDLPAGSKVAFYLDSSPIDAAAVDAEGHASISIDVDNIASEQPERTFEV EEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEHHHCCCCCCCCEEEE RARLVVPEDAPRSIARDALARFTVLPEQVQQNSLVIMNHPDVVSDGQTKTIVIAVKATAH EEEEECCCCCHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCCCCCEEEEEEEEEECC DGSPVAIGTLITFRVNGIERDVVPTNAQGTAKLQLDLKPVNTEDEEYEVTVEAELDELTA CCCCEEEEEEEEEEECCCEECCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECHHHHHH QTTFKVLAGEEEEPTSTEEQPSETEQPSEPEEEPTAPTGSSNGGSFAALLALLAALGGIV HEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH GAVLGLLKL HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1400240; 8591030 [H]