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The map label for this gene is pafC [H]

Identifier: 145295625

GI number: 145295625

Start: 1716001

End: 1716984

Strand: Reverse

Name: pafC [H]

Synonym: cgR_1552

Alternate gene names: 145295625

Gene position: 1716984-1716001 (Counterclockwise)

Preceding gene: 145295626

Following gene: 145295623

Centisome position: 51.81

GC content: 50.81

Gene sequence:

>984_bases
ATGCCGAAATCATCCAACAAAATCAGCGACCTTGCCCGCCAGCTTAATCTGTTGCCGTATTTCACCAGGCATAAAGGCCG
TACCGTCATGGAAGCAGCGCGCGATCTTGGCCAACCCTCCTCCCAAATCATGGAAGACCTCAACAGATTATGGATGTGTG
GTCTGCCAGGACTTCTTCCAGGTGACTTGGTGGAGCTTGATCATTCCTTCAAGGAAGTAAAAATCCACAATGCTCAAGGC
ATGGATAAACCCTTGCGGCTCACACCAACTGAAGCCGGTGTTTTGCTGCTGACACTTGAATCCCTGGAATCCCTCCCCGG
TATTGCAAAACAGGAAGCGGTCGTATCTGCTGCGAACAAGCTACGCGCCATCATGGGGGAGTATTCCTCGACTGTTTTCG
ACTCCACTGGAGAAGACCTCGACGCTGAAGTTCTAGAGATCATCCGCGACGCCATGGATTTACACCAGCAGGTCAGTTTC
CAATACCACTCGCACAGATCAGACAACACCAGCCTGAGGCAAGTCAGCCCTGCTCATATCTTCACCCATGAAGGCGAAAC
CTACATCAAAGCCTGGGAAGAAGCTGTGAACCAATGGCGGACGTTTAGGCTTGATCGCATCCGAAGCATTGTGCTTCTTG
ACAGCAAAGCAGTGCACCCGGCGCGAGGGGTTTCAGTATCCACGGACGATCCTTTTGAGTTCGCAAAATCTTCCGATATT
GCCACGTTATTGCTGCGTGAGGACGCAATGTGGTTAGGCAATTACATGGCCATGGAGGTGGATGAAACGGTGGAACCGAT
TCGCGATAGCGACGGATTCAGCTGGCACACAGTCCACTTTCCGCTGCTTTCTAGGGATTGGTTCGTCCGATTTGCGATTG
GCCACGCTGAGCATTTGAAAGTAACTAGTCCCGAAGATCTTCGGAAATGCATAAAGCAAAAGGCTCTTAGTGGTTTGTCA
GCGTATGATCATCACGTAGAGTAA

Upstream 100 bases:

>100_bases
CAGCAGCCCATGCGCCAGAAGCTCTCGTTATAGAACCCAAGGACGTCATCGACGATGTCATAGCCTTGCTGCGCAAAGTC
GAAAACGAGGTGGTGTAAAC

Downstream 100 bases:

>100_bases
CACCCAAGAGTAAGACGCAACATCAATCAATGTGCAAGGGTTTCATTTCTGGAAATCGTGGTCACCCCACATTCACCAGT
AATGAACAAGCTTGTTTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MPKSSNKISDLARQLNLLPYFTRHKGRTVMEAARDLGQPSSQIMEDLNRLWMCGLPGLLPGDLVELDHSFKEVKIHNAQG
MDKPLRLTPTEAGVLLLTLESLESLPGIAKQEAVVSAANKLRAIMGEYSSTVFDSTGEDLDAEVLEIIRDAMDLHQQVSF
QYHSHRSDNTSLRQVSPAHIFTHEGETYIKAWEEAVNQWRTFRLDRIRSIVLLDSKAVHPARGVSVSTDDPFEFAKSSDI
ATLLLREDAMWLGNYMAMEVDETVEPIRDSDGFSWHTVHFPLLSRDWFVRFAIGHAEHLKVTSPEDLRKCIKQKALSGLS
AYDHHVE

Sequences:

>Translated_327_residues
MPKSSNKISDLARQLNLLPYFTRHKGRTVMEAARDLGQPSSQIMEDLNRLWMCGLPGLLPGDLVELDHSFKEVKIHNAQG
MDKPLRLTPTEAGVLLLTLESLESLPGIAKQEAVVSAANKLRAIMGEYSSTVFDSTGEDLDAEVLEIIRDAMDLHQQVSF
QYHSHRSDNTSLRQVSPAHIFTHEGETYIKAWEEAVNQWRTFRLDRIRSIVLLDSKAVHPARGVSVSTDDPFEFAKSSDI
ATLLLREDAMWLGNYMAMEVDETVEPIRDSDGFSWHTVHFPLLSRDWFVRFAIGHAEHLKVTSPEDLRKCIKQKALSGLS
AYDHHVE
>Mature_326_residues
PKSSNKISDLARQLNLLPYFTRHKGRTVMEAARDLGQPSSQIMEDLNRLWMCGLPGLLPGDLVELDHSFKEVKIHNAQGM
DKPLRLTPTEAGVLLLTLESLESLPGIAKQEAVVSAANKLRAIMGEYSSTVFDSTGEDLDAEVLEIIRDAMDLHQQVSFQ
YHSHRSDNTSLRQVSPAHIFTHEGETYIKAWEEAVNQWRTFRLDRIRSIVLLDSKAVHPARGVSVSTDDPFEFAKSSDIA
TLLLREDAMWLGNYMAMEVDETVEPIRDSDGFSWHTVHFPLLSRDWFVRFAIGHAEHLKVTSPEDLRKCIKQKALSGLSA
YDHHVE

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36957; Mature: 36826

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS00485 A_DEAMINASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSSNKISDLARQLNLLPYFTRHKGRTVMEAARDLGQPSSQIMEDLNRLWMCGLPGLLP
CCCCCHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
GDLVELDHSFKEVKIHNAQGMDKPLRLTPTEAGVLLLTLESLESLPGIAKQEAVVSAANK
CHHHHHCCCHHHEEEECCCCCCCCCEECCCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHH
LRAIMGEYSSTVFDSTGEDLDAEVLEIIRDAMDLHQQVSFQYHSHRSDNTSLRQVSPAHI
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEE
FTHEGETYIKAWEEAVNQWRTFRLDRIRSIVLLDSKAVHPARGVSVSTDDPFEFAKSSDI
EECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCC
ATLLLREDAMWLGNYMAMEVDETVEPIRDSDGFSWHTVHFPLLSRDWFVRFAIGHAEHLK
EEEEEHHHHHHHCCCCEEEHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECCCCEEE
VTSPEDLRKCIKQKALSGLSAYDHHVE
CCCHHHHHHHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure 
PKSSNKISDLARQLNLLPYFTRHKGRTVMEAARDLGQPSSQIMEDLNRLWMCGLPGLLP
CCCCHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
GDLVELDHSFKEVKIHNAQGMDKPLRLTPTEAGVLLLTLESLESLPGIAKQEAVVSAANK
CHHHHHCCCHHHEEEECCCCCCCCCEECCCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHH
LRAIMGEYSSTVFDSTGEDLDAEVLEIIRDAMDLHQQVSFQYHSHRSDNTSLRQVSPAHI
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEE
FTHEGETYIKAWEEAVNQWRTFRLDRIRSIVLLDSKAVHPARGVSVSTDDPFEFAKSSDI
EECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCC
ATLLLREDAMWLGNYMAMEVDETVEPIRDSDGFSWHTVHFPLLSRDWFVRFAIGHAEHLK
EEEEEHHHHHHHCCCCEEEHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECCCCEEE
VTSPEDLRKCIKQKALSGLSAYDHHVE
CCCHHHHHHHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]