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The map label for this gene is pafB [H]

Identifier: 145295626

GI number: 145295626

Start: 1716987

End: 1717961

Strand: Reverse

Name: pafB [H]

Synonym: cgR_1553

Alternate gene names: 145295626

Gene position: 1717961-1716987 (Counterclockwise)

Preceding gene: 145295627

Following gene: 145295625

Centisome position: 51.84

GC content: 58.97

Gene sequence:

>975_bases
ATGTCGGATCGGAAGGAAGATCTCGAGCGTCAGATTAATCTGACTTTCGCGTTTTTAAGCGCCAATTCCTATTCCCGGAA
GTTTTTGACCCAGGTGTGGATTCGAGACAATGTCGGCGATTATAAAGGCCTTACCGATACGGCGTTCCGTAAGAAGCTGC
AGCGCGATCTTGCCTACCTGCGCAGAGTTGGCGTTCCGATTGAGCAGTTCATGGTCACCTCAGGCATAGCTGAAGGCCAG
CAGGCGTACCGTCTGGCCCAGGATTCTTATAAGCTCCCCGAGGTCGAATTCACCCCAGATGAGGCCGCCGTGCTGGGCAT
GGCAGGGGAGATGGGCCAAAATCAGGAGCTCGGCGCCTTCGCGCGTTCGGGGTGGACCAAATTGGCGGCCGGCGGCGCGC
AGCGTGATCTGTCCACGTCCACAGCCTTGACCAATGCGGGCGATTTAGGTTCCTTGTCTGCAAAAACCCTCGATGCGATC
ATCAAAGCCCGCCAAATGGGCAAACAAATCACCTTCGAATACCGGCGCGCGCCTAAGGACGCCCCCTCGCTTCGACACAT
GGATCCTTGGGGGCTAGTCCCTGAGCGCGACCGCATCTACCTGGTCGGATTCGACCTCGACCGCCAAGAGCCACGCACCT
TCCGCATCACCCGCGTCCGCAACATCAACCTCGGCGCCGACGCCACCCACCCCATGCCCGCAGGCACCAACCTCCAAGAC
ATGGTGCGCGCCCAACTACGCAGAAAGAGTGTGCTTATCGACGCCACCCTGCGCATCACACCCGGCCGCGCAGTGGAACT
GCGCGCCGCAGGGGTAGAAACCCCCGATGGGGCATGGTTTTTAGAAGACGTTGACCGAGATTGGCTGGTGCGCACCGCAG
CAGCCCATGCGCCAGAAGCTCTCGTTATAGAACCCAAGGACGTCATCGACGATGTCATAGCCTTGCTGCGCAAAGTCGAA
AACGAGGTGGTGTAA

Upstream 100 bases:

>100_bases
TTTTTCTGCAGTGAATTCCGAGGTTGATCAGTTGATTGAGTATATGACCGTTCATGCGGAGAGCTATCGCAGTTAGTCCG
CTCGCACTTCGGAGGCCTTG

Downstream 100 bases:

>100_bases
ACATGCCGAAATCATCCAACAAAATCAGCGACCTTGCCCGCCAGCTTAATCTGTTGCCGTATTTCACCAGGCATAAAGGC
CGTACCGTCATGGAAGCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSDRKEDLERQINLTFAFLSANSYSRKFLTQVWIRDNVGDYKGLTDTAFRKKLQRDLAYLRRVGVPIEQFMVTSGIAEGQ
QAYRLAQDSYKLPEVEFTPDEAAVLGMAGEMGQNQELGAFARSGWTKLAAGGAQRDLSTSTALTNAGDLGSLSAKTLDAI
IKARQMGKQITFEYRRAPKDAPSLRHMDPWGLVPERDRIYLVGFDLDRQEPRTFRITRVRNINLGADATHPMPAGTNLQD
MVRAQLRRKSVLIDATLRITPGRAVELRAAGVETPDGAWFLEDVDRDWLVRTAAAHAPEALVIEPKDVIDDVIALLRKVE
NEVV

Sequences:

>Translated_324_residues
MSDRKEDLERQINLTFAFLSANSYSRKFLTQVWIRDNVGDYKGLTDTAFRKKLQRDLAYLRRVGVPIEQFMVTSGIAEGQ
QAYRLAQDSYKLPEVEFTPDEAAVLGMAGEMGQNQELGAFARSGWTKLAAGGAQRDLSTSTALTNAGDLGSLSAKTLDAI
IKARQMGKQITFEYRRAPKDAPSLRHMDPWGLVPERDRIYLVGFDLDRQEPRTFRITRVRNINLGADATHPMPAGTNLQD
MVRAQLRRKSVLIDATLRITPGRAVELRAAGVETPDGAWFLEDVDRDWLVRTAAAHAPEALVIEPKDVIDDVIALLRKVE
NEVV
>Mature_323_residues
SDRKEDLERQINLTFAFLSANSYSRKFLTQVWIRDNVGDYKGLTDTAFRKKLQRDLAYLRRVGVPIEQFMVTSGIAEGQQ
AYRLAQDSYKLPEVEFTPDEAAVLGMAGEMGQNQELGAFARSGWTKLAAGGAQRDLSTSTALTNAGDLGSLSAKTLDAII
KARQMGKQITFEYRRAPKDAPSLRHMDPWGLVPERDRIYLVGFDLDRQEPRTFRITRVRNINLGADATHPMPAGTNLQDM
VRAQLRRKSVLIDATLRITPGRAVELRAAGVETPDGAWFLEDVDRDWLVRTAAAHAPEALVIEPKDVIDDVIALLRKVEN
EVV

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36214; Mature: 36082

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRKEDLERQINLTFAFLSANSYSRKFLTQVWIRDNVGDYKGLTDTAFRKKLQRDLAYL
CCCHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
RRVGVPIEQFMVTSGIAEGQQAYRLAQDSYKLPEVEFTPDEAAVLGMAGEMGQNQELGAF
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHEEECCCCCCCCCCHHHH
ARSGWTKLAAGGAQRDLSTSTALTNAGDLGSLSAKTLDAIIKARQMGKQITFEYRRAPKD
HHCCCHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCC
APSLRHMDPWGLVPERDRIYLVGFDLDRQEPRTFRITRVRNINLGADATHPMPAGTNLQD
CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHH
MVRAQLRRKSVLIDATLRITPGRAVELRAAGVETPDGAWFLEDVDRDWLVRTAAAHAPEA
HHHHHHHHHHEEEEEEEEECCCCEEEEEECCCCCCCCCEEHHHCCHHHHHHHHHHCCCCE
LVIEPKDVIDDVIALLRKVENEVV
EEECCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDRKEDLERQINLTFAFLSANSYSRKFLTQVWIRDNVGDYKGLTDTAFRKKLQRDLAYL
CCHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
RRVGVPIEQFMVTSGIAEGQQAYRLAQDSYKLPEVEFTPDEAAVLGMAGEMGQNQELGAF
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHEEECCCCCCCCCCHHHH
ARSGWTKLAAGGAQRDLSTSTALTNAGDLGSLSAKTLDAIIKARQMGKQITFEYRRAPKD
HHCCCHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCC
APSLRHMDPWGLVPERDRIYLVGFDLDRQEPRTFRITRVRNINLGADATHPMPAGTNLQD
CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHH
MVRAQLRRKSVLIDATLRITPGRAVELRAAGVETPDGAWFLEDVDRDWLVRTAAAHAPEA
HHHHHHHHHHEEEEEEEEECCCCEEEEEECCCCCCCCCEEHHHCCHHHHHHHHHHCCCCE
LVIEPKDVIDDVIALLRKVENEVV
EEECCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]