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The map label for this gene is yncC [C]

Identifier: 145295154

GI number: 145295154

Start: 1208648

End: 1209301

Strand: Direct

Name: yncC [C]

Synonym: cgR_1097

Alternate gene names: 145295154

Gene position: 1208648-1209301 (Clockwise)

Preceding gene: 145295149

Following gene: 145295155

Centisome position: 36.47

GC content: 51.38

Gene sequence:

>654_bases
ATGACGCAGGCAATAGCAGCATCCCTTGATTTAGCGGCTCGAATCACCGCCAAAATTGATCAAGGAGAGCTCACTCCAGG
TACTCGACTACCCGAGGTTGCTTTGGCAGAAGAACTTGGCGTTTCACGGAACACGCTGCGTGAAGCTTTTCGGGTACTCA
TGCAAGACGGACTGGTGGATCATATTCCCAACCGTGGGGTTTTCGTGCACACCTTCACCAAGTCAGATGTGGAAGATATC
TATGCCTACCGCGCATTTATCGAGGTTGCTGCGATTAGGTCGGCGCGGAAAAATCCTCAGTTGCTGGAGCAGTCTTTGGG
GGTAATGCGAGAGGCCTACGAAAGGGGTGCTGCAGCCAATGCCGTGGGTGATTGGCAAACTGTCGGTTCTGCCAACAGTG
CTTTTCACTTGGCGATTGTGGACCTAGCAGGAGTGGCTAGGTTGTCAGCAGACGCTCGAAAAGTGTTGGCGCTGGCTCGC
ATCGGATTCATGGCCACCTACAACGTGGAGACATTCCATAGCATTTACGTGGAAAAGAACCATCAAATCTTGAAGTATTT
GGCTGCCGGTGAATTCGAAGAGGCGGAACAATACCTCCAGAAATACTTCGAAGATTCGCGCGATGATTTGTCTGCGCACC
TACCGGAATTTTGA

Upstream 100 bases:

>100_bases
CCTGTAGCACAATCCCCCATAGGGATTAATAGTCATTGCATGCGGTCAGAGCACCCCCGCAAGTGCCTAGGTGTGTCCCC
AGTCCTTTAAGATCAGTCAC

Downstream 100 bases:

>100_bases
AATTGCGATAGCATAGATGACTTGACACTGTTGCAGCAGGCGGTTTTCACCTGGCCTCTTAGGATTTGGTCAAATGGTTG
CAACGACGCCAGGGAAGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator Gntr Family; GntR Family Regulatory Protein; Transcriptional Regulator GntR Family Protein; GntR Domain-Containing Protein; GntR Domain Protein; Transcription Regulator; GntR Family Transcription Regulator Protein; Transcriptional Regulator-Like Protein; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator GntR; GntR Family Regulatory; Transcriptional Regulatory Protein GntR Family; HTH-Type Transcriptional Regulator YdhC; Transcriptional Regulator Protein GntR Family; GntR Family Transcription Regulator; GntR-Family Protein Transcriptional Regulator; Naphthalene Degradation Regulatory Protein; Regulatory Protein GntR HTH

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTQAIAASLDLAARITAKIDQGELTPGTRLPEVALAEELGVSRNTLREAFRVLMQDGLVDHIPNRGVFVHTFTKSDVEDI
YAYRAFIEVAAIRSARKNPQLLEQSLGVMREAYERGAAANAVGDWQTVGSANSAFHLAIVDLAGVARLSADARKVLALAR
IGFMATYNVETFHSIYVEKNHQILKYLAAGEFEEAEQYLQKYFEDSRDDLSAHLPEF

Sequences:

>Translated_217_residues
MTQAIAASLDLAARITAKIDQGELTPGTRLPEVALAEELGVSRNTLREAFRVLMQDGLVDHIPNRGVFVHTFTKSDVEDI
YAYRAFIEVAAIRSARKNPQLLEQSLGVMREAYERGAAANAVGDWQTVGSANSAFHLAIVDLAGVARLSADARKVLALAR
IGFMATYNVETFHSIYVEKNHQILKYLAAGEFEEAEQYLQKYFEDSRDDLSAHLPEF
>Mature_216_residues
TQAIAASLDLAARITAKIDQGELTPGTRLPEVALAEELGVSRNTLREAFRVLMQDGLVDHIPNRGVFVHTFTKSDVEDIY
AYRAFIEVAAIRSARKNPQLLEQSLGVMREAYERGAAANAVGDWQTVGSANSAFHLAIVDLAGVARLSADARKVLALARI
GFMATYNVETFHSIYVEKNHQILKYLAAGEFEEAEQYLQKYFEDSRDDLSAHLPEF

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24031; Mature: 23900

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQAIAASLDLAARITAKIDQGELTPGTRLPEVALAEELGVSRNTLREAFRVLMQDGLVD
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHH
HIPNRGVFVHTFTKSDVEDIYAYRAFIEVAAIRSARKNPQLLEQSLGVMREAYERGAAAN
HCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
AVGDWQTVGSANSAFHLAIVDLAGVARLSADARKVLALARIGFMATYNVETFHSIYVEKN
CCCCHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCC
HQILKYLAAGEFEEAEQYLQKYFEDSRDDLSAHLPEF
HHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHCCCCC
>Mature Secondary Structure 
TQAIAASLDLAARITAKIDQGELTPGTRLPEVALAEELGVSRNTLREAFRVLMQDGLVD
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHH
HIPNRGVFVHTFTKSDVEDIYAYRAFIEVAAIRSARKNPQLLEQSLGVMREAYERGAAAN
HCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
AVGDWQTVGSANSAFHLAIVDLAGVARLSADARKVLALARIGFMATYNVETFHSIYVEKN
CCCCHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCC
HQILKYLAAGEFEEAEQYLQKYFEDSRDDLSAHLPEF
HHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA