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The map label for this gene is cspE [C]

Identifier: 145294989

GI number: 145294989

Start: 1033490

End: 1033873

Strand: Direct

Name: cspE [C]

Synonym: cgR_0934

Alternate gene names: 145294989

Gene position: 1033490-1033873 (Clockwise)

Preceding gene: 145294988

Following gene: 145294993

Centisome position: 31.18

GC content: 52.86

Gene sequence:

>384_bases
GTGCCTGTCGGAACAGTGAAGTGGTACGACGCGGAGCGTGGTTTCGGCTTTGTCTCCAATCCAGGTGGTGAAGATTGCTT
CGTAGGTAAGCAAGTACTTCCCAAGGGAGTCACCGAATTGCACAAGGGACAGCGAATCGATTTTGACTTCGCCGCAGGCC
GTAAGGGCCCTCAAGCACTTCGAATAAAGATTCTTGAAACTCCACGCAGGCGTCCACAGCACAAATACAAGCCAGAAGAG
CTCAACGGAATGATCTCTGACCTCATCACGCTTCTAGAAAGCGGCGTGCAGCCAGGCCTTGCCAAAGGGCAATACCCGGA
GCACAAAGCTGGAGCGCAGGTAGCAGAAATTCTTCGCGTTGTTGCGAAGGAGCTTGAGTCTTAA

Upstream 100 bases:

>100_bases
TTTACCGCGATGCTTGCGGTGTATAATAATTTCTTCTGGTCAAAAATAGTTGATCAATTTGAATCAGCATATGAATTAGG
AATGAAAGTGGTGAGGACAA

Downstream 100 bases:

>100_bases
AACAATAAGGAGAGGATCCGAAAACGGATCCTCTCCTTATTGTTTGTGAGTGAGTTACTCGTTCATCGTGGATAGCGACC
ACGTGACGGTGTAAGGGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: Cold-Shock Domain Family Protein; Cold Shock Protein B; Cold Shock-Like Protein B CspB; Cold Shock Protein CspB; Cold Shock Protein B CspB; Cold Shock-Like Protein B

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MPVGTVKWYDAERGFGFVSNPGGEDCFVGKQVLPKGVTELHKGQRIDFDFAAGRKGPQALRIKILETPRRRPQHKYKPEE
LNGMISDLITLLESGVQPGLAKGQYPEHKAGAQVAEILRVVAKELES

Sequences:

>Translated_127_residues
MPVGTVKWYDAERGFGFVSNPGGEDCFVGKQVLPKGVTELHKGQRIDFDFAAGRKGPQALRIKILETPRRRPQHKYKPEE
LNGMISDLITLLESGVQPGLAKGQYPEHKAGAQVAEILRVVAKELES
>Mature_126_residues
PVGTVKWYDAERGFGFVSNPGGEDCFVGKQVLPKGVTELHKGQRIDFDFAAGRKGPQALRIKILETPRRRPQHKYKPEEL
NGMISDLITLLESGVQPGLAKGQYPEHKAGAQVAEILRVVAKELES

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14024; Mature: 13893

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVGTVKWYDAERGFGFVSNPGGEDCFVGKQVLPKGVTELHKGQRIDFDFAAGRKGPQAL
CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHE
RIKILETPRRRPQHKYKPEELNGMISDLITLLESGVQPGLAKGQYPEHKAGAQVAEILRV
EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
VAKELES
HHHHHCC
>Mature Secondary Structure 
PVGTVKWYDAERGFGFVSNPGGEDCFVGKQVLPKGVTELHKGQRIDFDFAAGRKGPQAL
CCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHE
RIKILETPRRRPQHKYKPEELNGMISDLITLLESGVQPGLAKGQYPEHKAGAQVAEILRV
EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
VAKELES
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA