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The map label for this gene is pdxS [H]

Identifier: 145294951

GI number: 145294951

Start: 991191

End: 992225

Strand: Direct

Name: pdxS [H]

Synonym: cgR_0897

Alternate gene names: 145294951

Gene position: 991191-992225 (Clockwise)

Preceding gene: 145294949

Following gene: 145294952

Centisome position: 29.91

GC content: 59.32

Gene sequence:

>1035_bases
ATGTTGGTTCGTGTGGGTTTAAGGCGATGGGAAGGTCGGCAAGCATGGCTTCATCGTCCTCAAAAAAGTGGTCTAATGCA
AGTGGCTGAAAGTGGATCTACCGCTAGTCCACTTTGTGGCGTTGGATCATCTGTCATGACCGAAACTCAAGAAACTTACC
AAGCAACCACTCGTGTGAAGCGCGGCCTTGCTGACATGCTCAAGGGTGGTGTGATCATGGATGTGGTCACCCCTGAACAA
GCGCGCATCGCCGAAGATGCAGGTGCCAGCGCAGTTATGGCACTCGAGCGCGTTCCCGCCGATATCCGTTCTCAGGGCGG
CGTTGCTCGCATGAGTGATCCTGACCTGATCGAAGGAATCGTCAATGCGGTCTCCATCCCTGTCATGGCGAAAGCTCGCA
TCGGTCACTTCGTGGAAGCTCAGGTTCTGGAAGCTCTCGGTGTTGATTTCATCGACGAGTCCGAAGTTCTCAGCCCTGCC
GACTACACGCACCACATCAACAAGTGGAAGTTCGACGTTCCTTTCGTCTGTGGCGCGACCAACCTCGGCGAAGCTTTGCG
ACGCATCACCGAAGGCGCTGCAATGATCCGTTCCAAGGGTGAAGCCGGCACCGGCGATGTCTCTGAAGCTGTCCGTCACC
TGCGCACCATCCGCGGCGACATCAACCGCCTGCGCTCCCTGGATGAGGATGAACTCTTCGTCGCCGCCAAGGAATTCCAG
GCACCATACGACCTGGTCCGCGAAGTCGCCTCCACCGGCAAGCTCCCTGTGGTCACCTTCGTTGCAGGTGGCGTCGCAAC
CCCAGCCGACGCTGCACTCGTGCGCCAAATGGGCGCCGAAGGCGTCTTTGTCGGCTCCGGCATCTTCAAATCCGGCAATC
CAGCCGCCCGCGCCGCAGCGATCGTCAAGGCTGCAACGCTTTTCGACGACCCCTCCGTCATCGCCGACGTATCCCGCGGC
CTCGGTGAAGCCATGGTGGGCATCAACGTATCCGACGTCCCAGCACCACACCGACTCGCCGAGCGCGGCTGGTGA

Upstream 100 bases:

>100_bases
TGGGTGGATAGCGAGCGACTGCTGGGAAGCGGGTCTCCTGGGGTGAGAATTCCCCTCGCCACGAGACGGCGGATCTGTTC
TGTGAGCTGCGTGGGGATGG

Downstream 100 bases:

>100_bases
TCGTTGGAGTTTTAGCTCTCCAAGGCGGGGTGGAAGAACACCTCACCGCCTTGGAAGCTCTCGGAGCGACAACCCGAAAA
GTACGTGTGCCAAAGGACCT

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MLVRVGLRRWEGRQAWLHRPQKSGLMQVAESGSTASPLCGVGSSVMTETQETYQATTRVKRGLADMLKGGVIMDVVTPEQ
ARIAEDAGASAVMALERVPADIRSQGGVARMSDPDLIEGIVNAVSIPVMAKARIGHFVEAQVLEALGVDFIDESEVLSPA
DYTHHINKWKFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEAVRHLRTIRGDINRLRSLDEDELFVAAKEFQ
APYDLVREVASTGKLPVVTFVAGGVATPADAALVRQMGAEGVFVGSGIFKSGNPAARAAAIVKAATLFDDPSVIADVSRG
LGEAMVGINVSDVPAPHRLAERGW

Sequences:

>Translated_344_residues
MLVRVGLRRWEGRQAWLHRPQKSGLMQVAESGSTASPLCGVGSSVMTETQETYQATTRVKRGLADMLKGGVIMDVVTPEQ
ARIAEDAGASAVMALERVPADIRSQGGVARMSDPDLIEGIVNAVSIPVMAKARIGHFVEAQVLEALGVDFIDESEVLSPA
DYTHHINKWKFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEAVRHLRTIRGDINRLRSLDEDELFVAAKEFQ
APYDLVREVASTGKLPVVTFVAGGVATPADAALVRQMGAEGVFVGSGIFKSGNPAARAAAIVKAATLFDDPSVIADVSRG
LGEAMVGINVSDVPAPHRLAERGW
>Mature_344_residues
MLVRVGLRRWEGRQAWLHRPQKSGLMQVAESGSTASPLCGVGSSVMTETQETYQATTRVKRGLADMLKGGVIMDVVTPEQ
ARIAEDAGASAVMALERVPADIRSQGGVARMSDPDLIEGIVNAVSIPVMAKARIGHFVEAQVLEALGVDFIDESEVLSPA
DYTHHINKWKFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEAVRHLRTIRGDINRLRSLDEDELFVAAKEFQ
APYDLVREVASTGKLPVVTFVAGGVATPADAALVRQMGAEGVFVGSGIFKSGNPAARAAAIVKAATLFDDPSVIADVSRG
LGEAMVGINVSDVPAPHRLAERGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=291, Percent_Identity=63.9175257731959, Blast_Score=373, Evalue=1e-104,
Organism=Saccharomyces cerevisiae, GI6321049, Length=294, Percent_Identity=63.6054421768708, Blast_Score=363, Evalue=1e-101,
Organism=Saccharomyces cerevisiae, GI6323996, Length=294, Percent_Identity=63.265306122449, Blast_Score=363, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 36523; Mature: 36523

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVRVGLRRWEGRQAWLHRPQKSGLMQVAESGSTASPLCGVGSSVMTETQETYQATTRVK
CEEECCCHHCCCCHHHHCCCHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHH
RGLADMLKGGVIMDVVTPEQARIAEDAGASAVMALERVPADIRSQGGVARMSDPDLIEGI
HHHHHHHCCCEEEEEECCCHHHHHHHCCCHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHH
VNAVSIPVMAKARIGHFVEAQVLEALGVDFIDESEVLSPADYTHHINKWKFDVPFVCGAT
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEECCCCEEECCC
NLGEALRRITEGAAMIRSKGEAGTGDVSEAVRHLRTIRGDINRLRSLDEDELFVAAKEFQ
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEHHHHC
APYDLVREVASTGKLPVVTFVAGGVATPADAALVRQMGAEGVFVGSGIFKSGNPAARAAA
CHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHH
IVKAATLFDDPSVIADVSRGLGEAMVGINVSDVPAPHRLAERGW
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure
MLVRVGLRRWEGRQAWLHRPQKSGLMQVAESGSTASPLCGVGSSVMTETQETYQATTRVK
CEEECCCHHCCCCHHHHCCCHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHH
RGLADMLKGGVIMDVVTPEQARIAEDAGASAVMALERVPADIRSQGGVARMSDPDLIEGI
HHHHHHHCCCEEEEEECCCHHHHHHHCCCHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHH
VNAVSIPVMAKARIGHFVEAQVLEALGVDFIDESEVLSPADYTHHINKWKFDVPFVCGAT
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEECCCCEEECCC
NLGEALRRITEGAAMIRSKGEAGTGDVSEAVRHLRTIRGDINRLRSLDEDELFVAAKEFQ
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEHHHHC
APYDLVREVASTGKLPVVTFVAGGVATPADAALVRQMGAEGVFVGSGIFKSGNPAARAAA
CHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHH
IVKAATLFDDPSVIADVSRGLGEAMVGINVSDVPAPHRLAERGW
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]