Click here to switch to the map view.

The map label for this gene is rfbE [H]

Identifier: 145294324

GI number: 145294324

Start: 306649

End: 307440

Strand: Reverse

Name: rfbE [H]

Synonym: cgR_0279

Alternate gene names: 145294324

Gene position: 307440-306649 (Counterclockwise)

Preceding gene: 145294325

Following gene: 145294323

Centisome position: 9.28

GC content: 61.24

Gene sequence:

>792_bases
ATGGTATCCATCGATACATACAACGCCTGCGTCGACTTCCCCATCTTCGACGCCAAATCCCGCTCCATGAAGAAAGCCTT
CCTCGGCGCAGCCGGCGGAGCCATCGGACGCAACCAAGACAACGTCGTAGTCGTCGAAGCCCTCCGCGACATCAACCTTC
ACCTCCGCGAAGGTGACCGCGTCGGACTCGTCGGTCACAACGGCGCTGGCAAATCGACCCTCCTGCGCCTACTATCGGGC
ATCTACGAACCCACCCGCGGCTCCGCCGACATCCGCGGACGCGTCGCCCCCGTCTTCGACCTCGGCGTCGGCATGGACCC
CGAAATCTCTGGCTACGAAAACATCATCATCCGCGGCCTCTTCCTCGGCCAAACCCGCAAACAGATGAAAGCCAAAATGG
AAGAAATCGCCGACTTCACCGAACTCGGCGAATACCTCTCTATGCCTCTGCGCACCTACTCCACCGGCATGCGCATCCGC
CTAGCCCTCGGCGTGGTCACCTCCATCGAACCCGAAATTTTGCTTCTCGACGAGGGCATCGGGGCAGTCGATGCTGCTTT
TATGGCTAAGGCCCGTGACCGCCTGCAGGCACTCGTCGAGCGCTCTGGCATCCTCGTCTTCGCCTCCCACTCCAACGACT
TCCTCGCCCAACTCTGCAACACCGCACTCTGGGTCGACCACGGACAAATCCGCGACGCCGGCCTCGTCCCCGACATCGTC
GAATCCTACGAAGGCAAAGGCGCCGGCGACCACGTCCGCAGACTCCTCACCCGCATGGAAGAAGAAAAGTAG

Upstream 100 bases:

>100_bases
TGGATCGTCCTCGCCTTCACATTCGTCGGCCTTGGCCTTGCTCTCCTCGCGATGAAGCAATGGCGATTCCGCGTCAGCTA
CTGGGTATAAGGAGCACCAC

Downstream 100 bases:

>100_bases
CTCCTGCGTTTCGGGTTTGCGCGGTTGGGCGGTTAGTCGCTGGAGGTGACCACCCTGGCGGCAAGTTGGCCCTGTTGTGC
GCGGGTGCGCCAAACAAGGC

Product: hypothetical protein

Products: ADP; phosphate; maltose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MVSIDTYNACVDFPIFDAKSRSMKKAFLGAAGGAIGRNQDNVVVVEALRDINLHLREGDRVGLVGHNGAGKSTLLRLLSG
IYEPTRGSADIRGRVAPVFDLGVGMDPEISGYENIIIRGLFLGQTRKQMKAKMEEIADFTELGEYLSMPLRTYSTGMRIR
LALGVVTSIEPEILLLDEGIGAVDAAFMAKARDRLQALVERSGILVFASHSNDFLAQLCNTALWVDHGQIRDAGLVPDIV
ESYEGKGAGDHVRRLLTRMEEEK

Sequences:

>Translated_263_residues
MVSIDTYNACVDFPIFDAKSRSMKKAFLGAAGGAIGRNQDNVVVVEALRDINLHLREGDRVGLVGHNGAGKSTLLRLLSG
IYEPTRGSADIRGRVAPVFDLGVGMDPEISGYENIIIRGLFLGQTRKQMKAKMEEIADFTELGEYLSMPLRTYSTGMRIR
LALGVVTSIEPEILLLDEGIGAVDAAFMAKARDRLQALVERSGILVFASHSNDFLAQLCNTALWVDHGQIRDAGLVPDIV
ESYEGKGAGDHVRRLLTRMEEEK
>Mature_263_residues
MVSIDTYNACVDFPIFDAKSRSMKKAFLGAAGGAIGRNQDNVVVVEALRDINLHLREGDRVGLVGHNGAGKSTLLRLLSG
IYEPTRGSADIRGRVAPVFDLGVGMDPEISGYENIIIRGLFLGQTRKQMKAKMEEIADFTELGEYLSMPLRTYSTGMRIR
LALGVVTSIEPEILLLDEGIGAVDAAFMAKARDRLQALVERSGILVFASHSNDFLAQLCNTALWVDHGQIRDAGLVPDIV
ESYEGKGAGDHVRRLLTRMEEEK

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbD [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=245, Percent_Identity=26.9387755102041, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI153792144, Length=206, Percent_Identity=26.6990291262136, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI116734710, Length=162, Percent_Identity=30.2469135802469, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI31657092, Length=216, Percent_Identity=26.8518518518519, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI27477115, Length=210, Percent_Identity=25.7142857142857, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI6005701, Length=187, Percent_Identity=26.7379679144385, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1790467, Length=197, Percent_Identity=29.9492385786802, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787758, Length=200, Percent_Identity=30.5, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87081709, Length=202, Percent_Identity=27.2277227722772, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788761, Length=213, Percent_Identity=28.6384976525822, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI48995001, Length=214, Percent_Identity=26.6355140186916, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87081782, Length=218, Percent_Identity=30.2752293577982, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789032, Length=226, Percent_Identity=26.9911504424779, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788225, Length=210, Percent_Identity=24.7619047619048, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787547, Length=219, Percent_Identity=24.6575342465753, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87081791, Length=184, Percent_Identity=29.3478260869565, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787089, Length=209, Percent_Identity=25.8373205741627, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787712, Length=197, Percent_Identity=25.8883248730964, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082267, Length=197, Percent_Identity=27.4111675126904, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788450, Length=232, Percent_Identity=25.8620689655172, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787029, Length=205, Percent_Identity=24.390243902439, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786319, Length=197, Percent_Identity=25.8883248730964, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787759, Length=237, Percent_Identity=27.0042194092827, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789672, Length=210, Percent_Identity=23.8095238095238, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=29.1457286432161, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=237, Percent_Identity=29.1139240506329, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115533608, Length=184, Percent_Identity=29.3478260869565, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007184, Length=190, Percent_Identity=27.3684210526316, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221500365, Length=190, Percent_Identity=27.3684210526316, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 28734; Mature: 28734

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSIDTYNACVDFPIFDAKSRSMKKAFLGAAGGAIGRNQDNVVVVEALRDINLHLREGDR
CCEECCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHCCEEEEECCCE
VGLVGHNGAGKSTLLRLLSGIYEPTRGSADIRGRVAPVFDLGVGMDPEISGYENIIIRGL
EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEE
FLGQTRKQMKAKMEEIADFTELGEYLSMPLRTYSTGMRIRLALGVVTSIEPEILLLDEGI
EHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEEEHHHCCCCCEEEEECCC
GAVDAAFMAKARDRLQALVERSGILVFASHSNDFLAQLCNTALWVDHGQIRDAGLVPDIV
CHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHEEECCCCCCCCCCCHHHH
ESYEGKGAGDHVRRLLTRMEEEK
HHCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVSIDTYNACVDFPIFDAKSRSMKKAFLGAAGGAIGRNQDNVVVVEALRDINLHLREGDR
CCEECCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHCCEEEEECCCE
VGLVGHNGAGKSTLLRLLSGIYEPTRGSADIRGRVAPVFDLGVGMDPEISGYENIIIRGL
EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEE
FLGQTRKQMKAKMEEIADFTELGEYLSMPLRTYSTGMRIRLALGVVTSIEPEILLLDEGI
EHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEEEHHHCCCCCEEEEECCC
GAVDAAFMAKARDRLQALVERSGILVFASHSNDFLAQLCNTALWVDHGQIRDAGLVPDIV
CHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHEEECCCCCCCCCCCHHHH
ESYEGKGAGDHVRRLLTRMEEEK
HHCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; maltose [Periplasm]; H2O [C]

Specific reaction: ATP + maltose [Periplasm] + H2O = ADP + phosphate + maltose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]