Click here to switch to the map view.

The map label for this gene is rfbD [H]

Identifier: 145294325

GI number: 145294325

Start: 307451

End: 308347

Strand: Reverse

Name: rfbD [H]

Synonym: cgR_0280

Alternate gene names: 145294325

Gene position: 308347-307451 (Counterclockwise)

Preceding gene: 145294327

Following gene: 145294324

Centisome position: 9.3

GC content: 58.08

Gene sequence:

>897_bases
GTGCAGGAACAATCGAAGCAGAAAGACCTCCAGGCCGATATCGCCAGAATCACTGCCGTGAAATCGGACACAGTTCCGAA
TTCCCAGTCAATGACCTTTGGCGCTGCCTGGAACGATATCGTCCGCGGATTCAAGCAACATGAGTTGTGGCTGCAACTCG
GCTGGCAAGACATTAAGCAACGCTACCGGCGATCCGTCCTTGGGCCCCTGTGGATCACCATCGCCACCGGTGTCATGGCG
CTCGCCCTCGGCTTGCTGTACTCCGTGCTGTTCAAAATCCCCATCGCGGAATTTCTGCCCCACGTCACCGTCGGCCTGAT
CATTTGGAACTTCATCTCCGGATGCATCAAAGAAGGCTCCGACATCTTCATAGATAACGAGGGACTCATCAAACAGCTCC
CCTCGGCGCTGTCCGTCCACGTGTACAGACTCGTGTGGAAACAAGCTCTCTTCCTCGCCCACAACCTGGTCATCTGGGTC
ATTCTCATGATGATCTTCCCCCGACCCCTCGGCTGGGACGTCCTCCTGATCATCCCCGCAATGTTCCTCCTGGTGATCAA
CGGCGTGTGGGTAGTCATGTTCTTCGGCATCATCGCCACCCGCTACCGCGACGTCTCCCCGCTGCTAGAAGCCGGAACCC
AACTCCTCTTCTACGTCACCCCCATCGTCTGGATGACTTCCACCCTGCAATCCCAGAGCGCAGAAATCGGCAACCGCGCA
CGCCTCGCCGAACTCAACCCGCTCTACCACTACCTCGAAATCGTCCGCGCCCCCATGATCGGCGCCGACCTCCCCGCCTA
CCACTGGTGGATCGTCCTCGCCTTCACATTCGTCGGCCTTGGCCTTGCTCTCCTCGCGATGAAGCAATGGCGATTCCGCG
TCAGCTACTGGGTATAA

Upstream 100 bases:

>100_bases
TCTTGGACAACATTACCCCACACACGGGACACTCAAACGTGCATGAATTCACCTGTCGTCGATACCCAAAAATCACTCCA
CCACCACTAGGGTGTCTTAT

Downstream 100 bases:

>100_bases
GGAGCACCACATGGTATCCATCGATACATACAACGCCTGCGTCGACTTCCCCATCTTCGACGCCAAATCCCGCTCCATGA
AGAAAGCCTTCCTCGGCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MQEQSKQKDLQADIARITAVKSDTVPNSQSMTFGAAWNDIVRGFKQHELWLQLGWQDIKQRYRRSVLGPLWITIATGVMA
LALGLLYSVLFKIPIAEFLPHVTVGLIIWNFISGCIKEGSDIFIDNEGLIKQLPSALSVHVYRLVWKQALFLAHNLVIWV
ILMMIFPRPLGWDVLLIIPAMFLLVINGVWVVMFFGIIATRYRDVSPLLEAGTQLLFYVTPIVWMTSTLQSQSAEIGNRA
RLAELNPLYHYLEIVRAPMIGADLPAYHWWIVLAFTFVGLGLALLAMKQWRFRVSYWV

Sequences:

>Translated_298_residues
MQEQSKQKDLQADIARITAVKSDTVPNSQSMTFGAAWNDIVRGFKQHELWLQLGWQDIKQRYRRSVLGPLWITIATGVMA
LALGLLYSVLFKIPIAEFLPHVTVGLIIWNFISGCIKEGSDIFIDNEGLIKQLPSALSVHVYRLVWKQALFLAHNLVIWV
ILMMIFPRPLGWDVLLIIPAMFLLVINGVWVVMFFGIIATRYRDVSPLLEAGTQLLFYVTPIVWMTSTLQSQSAEIGNRA
RLAELNPLYHYLEIVRAPMIGADLPAYHWWIVLAFTFVGLGLALLAMKQWRFRVSYWV
>Mature_298_residues
MQEQSKQKDLQADIARITAVKSDTVPNSQSMTFGAAWNDIVRGFKQHELWLQLGWQDIKQRYRRSVLGPLWITIATGVMA
LALGLLYSVLFKIPIAEFLPHVTVGLIIWNFISGCIKEGSDIFIDNEGLIKQLPSALSVHVYRLVWKQALFLAHNLVIWV
ILMMIFPRPLGWDVLLIIPAMFLLVINGVWVVMFFGIIATRYRDVSPLLEAGTQLLFYVTPIVWMTSTLQSQSAEIGNRA
RLAELNPLYHYLEIVRAPMIGADLPAYHWWIVLAFTFVGLGLALLAMKQWRFRVSYWV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 34056; Mature: 34056

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEQSKQKDLQADIARITAVKSDTVPNSQSMTFGAAWNDIVRGFKQHELWLQLGWQDIKQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCHHHHHH
RYRRSVLGPLWITIATGVMALALGLLYSVLFKIPIAEFLPHVTVGLIIWNFISGCIKEGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
DIFIDNEGLIKQLPSALSVHVYRLVWKQALFLAHNLVIWVILMMIFPRPLGWDVLLIIPA
CEEECCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
MFLLVINGVWVVMFFGIIATRYRDVSPLLEAGTQLLFYVTPIVWMTSTLQSQSAEIGNRA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
RLAELNPLYHYLEIVRAPMIGADLPAYHWWIVLAFTFVGLGLALLAMKQWRFRVSYWV
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQEQSKQKDLQADIARITAVKSDTVPNSQSMTFGAAWNDIVRGFKQHELWLQLGWQDIKQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCHHHHHH
RYRRSVLGPLWITIATGVMALALGLLYSVLFKIPIAEFLPHVTVGLIIWNFISGCIKEGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
DIFIDNEGLIKQLPSALSVHVYRLVWKQALFLAHNLVIWVILMMIFPRPLGWDVLLIIPA
CEEECCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
MFLLVINGVWVVMFFGIIATRYRDVSPLLEAGTQLLFYVTPIVWMTSTLQSQSAEIGNRA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
RLAELNPLYHYLEIVRAPMIGADLPAYHWWIVLAFTFVGLGLALLAMKQWRFRVSYWV
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]