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The map label for this gene is kdgT1 [H]

Identifier: 138896865

GI number: 138896865

Start: 3341237

End: 3342268

Strand: Direct

Name: kdgT1 [H]

Synonym: GTNG_3230

Alternate gene names: 138896865

Gene position: 3341237-3342268 (Clockwise)

Preceding gene: 138896864

Following gene: 138896866

Centisome position: 94.11

GC content: 44.28

Gene sequence:

>1032_bases
ATGTTTCATTTTTCAACACTTCAAGAAGGGGGAAAGGGAGAAATGAAAATCAAAGCGACATTGGATCGTATTCCTGGCGG
GATGATGGTCGTGCCATTACTATTAGCCGCAACTATTAACACGGTTGTTCCTGATTTACTTCGGATTGGAAACTTTACTG
AGGCATTATTTGTAAATAGCGCAAGTGCTTTAATTGCTCTTTTTTTGCTTTGCGCTGGGGCACAAATCAACTTACGCAGC
GCGGGGGTTGCTCTTGGAAAAGGTTTTACTTTGCTTTTCATAAAATGGCTAGTTGGAGCGGTTGTTGGGCTAATCGCCTA
CCTTTTTGCTGGTGCGGACGGTTTGTTTCTAGGGTTAGTTCCTCTTGCCATTATTGCCGCCATGACCAACAGTAACGGAG
GGCTGTACATGGCAATTGTCGGCCAATATGGTAAAGAAGATGACAAGGCAGCCTATTCTCTATTAGCATTAAATGATGGG
CCATTTTTAACCATGGTTGCCTTATCGATTTTCGGAGCAATGGGGTTCGTTGACGGAATGTTTTCAGTTATCTCATTTAT
CTCCGTCTTACTTCCCATTGTCATCGGAATGATCCTTGGCAACTTGGATAGTGACATGAGAGAGTTCTTAGCTAAAGGCA
GTGATATGTTAATCCCATTTTTCGCCTTTTCCTTAGGAATGGGAATTGATTTCGGGGCTATTGTCAAAGGCGGATTAAGC
GGTGTATTGCTTGGGGTAGCCACCGTATTTCTTACCGGCACAGCCGGGTATTTTGTCTTTAAAATTCTGGGATGGAATCC
GATCGTCGGGGCAGCTGAAGGTTCCACTGCAGGCAACGCAGTAGCCACCCCTGCCGCCATCGCAGCTGCCAATGCTTCTT
TCGCTAATGTTGTCGATTTGGCGACCGTCCAAGTAGCAGCCAGTACAGTTACAACTGCAATTTTGTTGCCCCTTTATATT
GCATTTCTGTCCAAAAAATTAGAAAAGAAGAATAACAGCAAGAACACCGTCAAGTATCAAATGGGTTCATAA

Upstream 100 bases:

>100_bases
CGCAACATTATTTCAGTTTTTATTTATTTTAACAAAAATGTGTTGATAAATAAAACAAAACGAACTACAATTTAATTGCA
AGCGATTTCACATAAATTAA

Downstream 100 bases:

>100_bases
ATTGGCACTTCCCTTACCTTAAGGAAGGAGATACACACCATGAAAATCGCAATCATTGCAGATGACTTAACGGGTGCAAA
TGACAGCGGCGCACAATTTG

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease 1 [H]

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MFHFSTLQEGGKGEMKIKATLDRIPGGMMVVPLLLAATINTVVPDLLRIGNFTEALFVNSASALIALFLLCAGAQINLRS
AGVALGKGFTLLFIKWLVGAVVGLIAYLFAGADGLFLGLVPLAIIAAMTNSNGGLYMAIVGQYGKEDDKAAYSLLALNDG
PFLTMVALSIFGAMGFVDGMFSVISFISVLLPIVIGMILGNLDSDMREFLAKGSDMLIPFFAFSLGMGIDFGAIVKGGLS
GVLLGVATVFLTGTAGYFVFKILGWNPIVGAAEGSTAGNAVATPAAIAAANASFANVVDLATVQVAASTVTTAILLPLYI
AFLSKKLEKKNNSKNTVKYQMGS

Sequences:

>Translated_343_residues
MFHFSTLQEGGKGEMKIKATLDRIPGGMMVVPLLLAATINTVVPDLLRIGNFTEALFVNSASALIALFLLCAGAQINLRS
AGVALGKGFTLLFIKWLVGAVVGLIAYLFAGADGLFLGLVPLAIIAAMTNSNGGLYMAIVGQYGKEDDKAAYSLLALNDG
PFLTMVALSIFGAMGFVDGMFSVISFISVLLPIVIGMILGNLDSDMREFLAKGSDMLIPFFAFSLGMGIDFGAIVKGGLS
GVLLGVATVFLTGTAGYFVFKILGWNPIVGAAEGSTAGNAVATPAAIAAANASFANVVDLATVQVAASTVTTAILLPLYI
AFLSKKLEKKNNSKNTVKYQMGS
>Mature_343_residues
MFHFSTLQEGGKGEMKIKATLDRIPGGMMVVPLLLAATINTVVPDLLRIGNFTEALFVNSASALIALFLLCAGAQINLRS
AGVALGKGFTLLFIKWLVGAVVGLIAYLFAGADGLFLGLVPLAIIAAMTNSNGGLYMAIVGQYGKEDDKAAYSLLALNDG
PFLTMVALSIFGAMGFVDGMFSVISFISVLLPIVIGMILGNLDSDMREFLAKGSDMLIPFFAFSLGMGIDFGAIVKGGLS
GVLLGVATVFLTGTAGYFVFKILGWNPIVGAAEGSTAGNAVATPAAIAAANASFANVVDLATVQVAASTVTTAILLPLYI
AFLSKKLEKKNNSKNTVKYQMGS

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=328, Percent_Identity=36.890243902439, Blast_Score=171, Evalue=4e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 35562; Mature: 35562

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHFSTLQEGGKGEMKIKATLDRIPGGMMVVPLLLAATINTVVPDLLRIGNFTEALFVNS
CCCCCCCCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
ASALIALFLLCAGAQINLRSAGVALGKGFTLLFIKWLVGAVVGLIAYLFAGADGLFLGLV
HHHHHHHHHHHCCCCEEEHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
PLAIIAAMTNSNGGLYMAIVGQYGKEDDKAAYSLLALNDGPFLTMVALSIFGAMGFVDGM
HHHHHHHHCCCCCCEEEEEECCCCCCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHH
FSVISFISVLLPIVIGMILGNLDSDMREFLAKGSDMLIPFFAFSLGMGIDFGAIVKGGLS
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHCCHH
GVLLGVATVFLTGTAGYFVFKILGWNPIVGAAEGSTAGNAVATPAAIAAANASFANVVDL
HHHHHHHHHHHHCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHCCCCHHHHHHH
ATVQVAASTVTTAILLPLYIAFLSKKLEKKNNSKNTVKYQMGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
>Mature Secondary Structure
MFHFSTLQEGGKGEMKIKATLDRIPGGMMVVPLLLAATINTVVPDLLRIGNFTEALFVNS
CCCCCCCCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
ASALIALFLLCAGAQINLRSAGVALGKGFTLLFIKWLVGAVVGLIAYLFAGADGLFLGLV
HHHHHHHHHHHCCCCEEEHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
PLAIIAAMTNSNGGLYMAIVGQYGKEDDKAAYSLLALNDGPFLTMVALSIFGAMGFVDGM
HHHHHHHHCCCCCCEEEEEECCCCCCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHH
FSVISFISVLLPIVIGMILGNLDSDMREFLAKGSDMLIPFFAFSLGMGIDFGAIVKGGLS
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHCCHH
GVLLGVATVFLTGTAGYFVFKILGWNPIVGAAEGSTAGNAVATPAAIAAANASFANVVDL
HHHHHHHHHHHHCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHCCCCHHHHHHH
ATVQVAASTVTTAILLPLYIAFLSKKLEKKNNSKNTVKYQMGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]