Click here to switch to the map view.

The map label for this gene is yerO [H]

Identifier: 138896757

GI number: 138896757

Start: 3220876

End: 3221733

Strand: Reverse

Name: yerO [H]

Synonym: GTNG_3120

Alternate gene names: 138896757

Gene position: 3221733-3220876 (Counterclockwise)

Preceding gene: 138896758

Following gene: 138896756

Centisome position: 90.74

GC content: 49.65

Gene sequence:

>858_bases
ATGAAGTTGTTTGCTCAAAAAGGGTATCATGCGACATCGATTCAAGATTTAGTTGAGGCATGGGGCATTTCCAAAGGGGC
GTTTTACCATCATTTTACTTCGAAAGAAGAATTGTTGTTGGTGGTACTGAAGTATTATAGTGAGAAGATGATGGCAGATT
TGACAGCAGCGGTTGGCGGGTCAGAAAAAGAACAGTTCGTCCGCCAGCTGGCTGCTCATTTTTCGCATGTCCGCCAATAC
AAAGAGTTTTTGCATATGATCATGTCGGAACAGCTGCCAAAAGTCAATCCGGAAATTGAGCAGTATATGTTCTGCCAACA
TGGGCGGCTCTTTTTATGGTATTGTTCGCGTCTCAAAGACGTATATGGGGAGGCAGTCGAGCCACATCTTTATGATGTGG
CGATGATCGTGAACGGTGTCATCCGACAATATTTGTTTTATTTCTTTTTCCACGAGGAGTCGTTCGACGCTGAGGAGGTA
GCTCGCTTTCTCATGCGGCGCTTCGATGCGATCATCGACAGCTTTGCGGCAGATGAACGTCCACTGTTGACGAAGGAGTC
ATTTGCCTCGTGGATAGAATTGGAAGAGCGCGAGCGACAAAAGCGACGAGAGCGTCTTGCTTCGGCGTTTTCCGCCGTTC
GGGAGGCGGCGAAGGAACTTGGCTCGAAGAAGGCGGATGATGTGCTTGAGGCGGTCGACGCGCTCGAAGAAGAGCTGCTC
GGGCGTCATGAGCCGCCGCGCACCTATCTGGTCGATGCGCTGCTTTTATATTTGCGCCATCAACAAGCGCCCTCACTTGC
GGCGGCCTTGGCCGAGCTGAGCCAAGAAATTAAAACGTATCAACAATTGAATGGATAG

Upstream 100 bases:

>100_bases
CGCGCATTGTTGCCATCTTATCGGCAATGGGAGGCGGCGAATAGGGAAGGAATGAGCGATTGCCATGGATGAACGGCGCG
TTCAATTTATCGAAACAGCG

Downstream 100 bases:

>100_bases
GAGAGAGACAGATGGAAAAAGCATTAGCAGCGCCAGCAAGTACGATCCGGCATCGTCCGCTGCTTATTACGGGACTCATT
ATCGCTATGTTGTTTGCAGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MKLFAQKGYHATSIQDLVEAWGISKGAFYHHFTSKEELLLVVLKYYSEKMMADLTAAVGGSEKEQFVRQLAAHFSHVRQY
KEFLHMIMSEQLPKVNPEIEQYMFCQHGRLFLWYCSRLKDVYGEAVEPHLYDVAMIVNGVIRQYLFYFFFHEESFDAEEV
ARFLMRRFDAIIDSFAADERPLLTKESFASWIELEERERQKRRERLASAFSAVREAAKELGSKKADDVLEAVDALEEELL
GRHEPPRTYLVDALLLYLRHQQAPSLAAALAELSQEIKTYQQLNG

Sequences:

>Translated_285_residues
MKLFAQKGYHATSIQDLVEAWGISKGAFYHHFTSKEELLLVVLKYYSEKMMADLTAAVGGSEKEQFVRQLAAHFSHVRQY
KEFLHMIMSEQLPKVNPEIEQYMFCQHGRLFLWYCSRLKDVYGEAVEPHLYDVAMIVNGVIRQYLFYFFFHEESFDAEEV
ARFLMRRFDAIIDSFAADERPLLTKESFASWIELEERERQKRRERLASAFSAVREAAKELGSKKADDVLEAVDALEEELL
GRHEPPRTYLVDALLLYLRHQQAPSLAAALAELSQEIKTYQQLNG
>Mature_285_residues
MKLFAQKGYHATSIQDLVEAWGISKGAFYHHFTSKEELLLVVLKYYSEKMMADLTAAVGGSEKEQFVRQLAAHFSHVRQY
KEFLHMIMSEQLPKVNPEIEQYMFCQHGRLFLWYCSRLKDVYGEAVEPHLYDVAMIVNGVIRQYLFYFFFHEESFDAEEV
ARFLMRRFDAIIDSFAADERPLLTKESFASWIELEERERQKRRERLASAFSAVREAAKELGSKKADDVLEAVDALEEELL
GRHEPPRTYLVDALLLYLRHQQAPSLAAALAELSQEIKTYQQLNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 33176; Mature: 33176

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFAQKGYHATSIQDLVEAWGISKGAFYHHFTSKEELLLVVLKYYSEKMMADLTAAVGG
CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
SEKEQFVRQLAAHFSHVRQYKEFLHMIMSEQLPKVNPEIEQYMFCQHGRLFLWYCSRLKD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
VYGEAVEPHLYDVAMIVNGVIRQYLFYFFFHEESFDAEEVARFLMRRFDAIIDSFAADER
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PLLTKESFASWIELEERERQKRRERLASAFSAVREAAKELGSKKADDVLEAVDALEEELL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GRHEPPRTYLVDALLLYLRHQQAPSLAAALAELSQEIKTYQQLNG
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLFAQKGYHATSIQDLVEAWGISKGAFYHHFTSKEELLLVVLKYYSEKMMADLTAAVGG
CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
SEKEQFVRQLAAHFSHVRQYKEFLHMIMSEQLPKVNPEIEQYMFCQHGRLFLWYCSRLKD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
VYGEAVEPHLYDVAMIVNGVIRQYLFYFFFHEESFDAEEVARFLMRRFDAIIDSFAADER
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PLLTKESFASWIELEERERQKRRERLASAFSAVREAAKELGSKKADDVLEAVDALEEELL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GRHEPPRTYLVDALLLYLRHQQAPSLAAALAELSQEIKTYQQLNG
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]