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The map label for this gene is swrAB [H]

Identifier: 138896675

GI number: 138896675

Start: 3134752

End: 3135924

Strand: Reverse

Name: swrAB [H]

Synonym: GTNG_3038

Alternate gene names: 138896675

Gene position: 3135924-3134752 (Counterclockwise)

Preceding gene: 138896677

Following gene: 138896674

Centisome position: 88.33

GC content: 59.08

Gene sequence:

>1173_bases
ATGGCAACATGGGGGCTGGAATTGCTTGAAGGGATCGCGGCCGTATGGCGGCAGCCGCTCCTTTATTATGGCGTCCTTTT
AGCTATTGTCGCCGGCTGGCGGCGGGTAAAGCGGGAACGCCGTGACTTTCATGTGCGCGTCCATCATCCATGGCAAGAAT
GGCGCGGGCTCTGGACATGGGGATGGGCAGCCGGTGCGGTGTTGTCTGTGGTGGCGATCAGCGCTGGAGTCGCGTTGCCG
CGCGAGGCGGTGTGGATGGTGACAGCGCTGACCGTTGTCATTGGCTTCACGATGGAAGCGCGCCTCTTATCGCCAGCGTA
CACCGTTGGCGGTGCGATCGTGCTGCTCGGTTTGATCGGGCAAAGCGGGATGGTGAGCGACTTATTCCCTGATGGCCCAA
CGGCGGGGGCGGCCTTGGCTTTGTTTCTTACGTTGTTGTTGGCGGCTGAAGGGTGGCTCATCCTCCGTTCCCAAAAAGGG
ACGGCGTCGCCGCAGCTCGTGAAAAGCAAGCGGGGGATGACGATTGGCATGCAATGGACGCAACGTTTTTGGTTTGTGCC
GATCGTGCTCCCGGTATCTGGCGGTGCGTTGTCACCGGTCTCATGGTGGCCGCTTCTTCCGGCTGGGGACGGTTATTCGT
TTTGGTTGGTGCCGTTTCTTCTTGGATTTTCGCAACGCCGGCAACACGTCATGCCGCCGGAAGCGGCTCATGAGGAAGGG
CGGCGTGTGCTTCGGCTTGCGCTCCTTGTCGCTCTGCTAGCCGTTGTTGGTATATGGTACTTGCCGTTGGCGTTTGTTGC
GGGGGCTGTGGCGATTATCGGCCGCGAGTGGATCGCTTTTTCTGGGCACCGCGCTGACCGAGCCCGACCGCCCCGCTTCG
CCCGTCATTCGCAAGGGGTAGTGATTGTCGGCGTGCTCCCTGGCTCGAAAGCGGAGAAAATGGGGCTACAAATCGGGGAA
ATCATTATGAAAGCGAACGGTGTCCACGTGCGGACGGAGGCGGAGTTTTATGAAGAGCTGCAGCGTAATCGGGCGTTTTG
TAAGCTTGACGTCATCGGGCATAACGGTGAAGTCCGCTTTGTCCAAGGGGCGTTGTATGAAGATGAACATCATGAGCTTG
GCTTGTTATTTGTCCACAATCGGGGCGCGTCGGCGTCCGAAGCTGTTTCGTAA

Upstream 100 bases:

>100_bases
TCATGAGCGGCAAAAAAGATGGCCGCAGGCATGGGATTTGCCGTGGCCATTTGGTAGAATAGAAGATAAAGACTGGTGAA
CGAAGCAAGGGGGGAAGCGG

Downstream 100 bases:

>100_bases
AGGAGACTGAGCATATGTGGTTTCTCGCCGCACTCATCATTCCGTGCTTTCTTGTCTTGTTGTTTACACGGGTGACTTAC
AATCGATACATCGCGGTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MATWGLELLEGIAAVWRQPLLYYGVLLAIVAGWRRVKRERRDFHVRVHHPWQEWRGLWTWGWAAGAVLSVVAISAGVALP
REAVWMVTALTVVIGFTMEARLLSPAYTVGGAIVLLGLIGQSGMVSDLFPDGPTAGAALALFLTLLLAAEGWLILRSQKG
TASPQLVKSKRGMTIGMQWTQRFWFVPIVLPVSGGALSPVSWWPLLPAGDGYSFWLVPFLLGFSQRRQHVMPPEAAHEEG
RRVLRLALLVALLAVVGIWYLPLAFVAGAVAIIGREWIAFSGHRADRARPPRFARHSQGVVIVGVLPGSKAEKMGLQIGE
IIMKANGVHVRTEAEFYEELQRNRAFCKLDVIGHNGEVRFVQGALYEDEHHELGLLFVHNRGASASEAVS

Sequences:

>Translated_390_residues
MATWGLELLEGIAAVWRQPLLYYGVLLAIVAGWRRVKRERRDFHVRVHHPWQEWRGLWTWGWAAGAVLSVVAISAGVALP
REAVWMVTALTVVIGFTMEARLLSPAYTVGGAIVLLGLIGQSGMVSDLFPDGPTAGAALALFLTLLLAAEGWLILRSQKG
TASPQLVKSKRGMTIGMQWTQRFWFVPIVLPVSGGALSPVSWWPLLPAGDGYSFWLVPFLLGFSQRRQHVMPPEAAHEEG
RRVLRLALLVALLAVVGIWYLPLAFVAGAVAIIGREWIAFSGHRADRARPPRFARHSQGVVIVGVLPGSKAEKMGLQIGE
IIMKANGVHVRTEAEFYEELQRNRAFCKLDVIGHNGEVRFVQGALYEDEHHELGLLFVHNRGASASEAVS
>Mature_389_residues
ATWGLELLEGIAAVWRQPLLYYGVLLAIVAGWRRVKRERRDFHVRVHHPWQEWRGLWTWGWAAGAVLSVVAISAGVALPR
EAVWMVTALTVVIGFTMEARLLSPAYTVGGAIVLLGLIGQSGMVSDLFPDGPTAGAALALFLTLLLAAEGWLILRSQKGT
ASPQLVKSKRGMTIGMQWTQRFWFVPIVLPVSGGALSPVSWWPLLPAGDGYSFWLVPFLLGFSQRRQHVMPPEAAHEEGR
RVLRLALLVALLAVVGIWYLPLAFVAGAVAIIGREWIAFSGHRADRARPPRFARHSQGVVIVGVLPGSKAEKMGLQIGEI
IMKANGVHVRTEAEFYEELQRNRAFCKLDVIGHNGEVRFVQGALYEDEHHELGLLFVHNRGASASEAVS

Specific function: Required for surface-adhering cells to differentiate into hyperflagellated and elongated swarm cells [H]

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42902; Mature: 42771

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATWGLELLEGIAAVWRQPLLYYGVLLAIVAGWRRVKRERRDFHVRVHHPWQEWRGLWTW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHCCCEEE
GWAAGAVLSVVAISAGVALPREAVWMVTALTVVIGFTMEARLLSPAYTVGGAIVLLGLIG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHC
QSGMVSDLFPDGPTAGAALALFLTLLLAAEGWLILRSQKGTASPQLVKSKRGMTIGMQWT
CCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCEEEEEHH
QRFWFVPIVLPVSGGALSPVSWWPLLPAGDGYSFWLVPFLLGFSQRRQHVMPPEAAHEEG
CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHCCCCCCHHHHHHH
RRVLRLALLVALLAVVGIWYLPLAFVAGAVAIIGREWIAFSGHRADRARPPRFARHSQGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHCCCCE
VIVGVLPGSKAEKMGLQIGEIIMKANGVHVRTEAEFYEELQRNRAFCKLDVIGHNGEVRF
EEEEECCCCCHHHHCCHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEEEEECCCCCEEE
VQGALYEDEHHELGLLFVHNRGASASEAVS
EECCCCCCCCCCEEEEEEECCCCCHHHCCC
>Mature Secondary Structure 
ATWGLELLEGIAAVWRQPLLYYGVLLAIVAGWRRVKRERRDFHVRVHHPWQEWRGLWTW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHCCCEEE
GWAAGAVLSVVAISAGVALPREAVWMVTALTVVIGFTMEARLLSPAYTVGGAIVLLGLIG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHC
QSGMVSDLFPDGPTAGAALALFLTLLLAAEGWLILRSQKGTASPQLVKSKRGMTIGMQWT
CCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCEEEEEHH
QRFWFVPIVLPVSGGALSPVSWWPLLPAGDGYSFWLVPFLLGFSQRRQHVMPPEAAHEEG
CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHCCCCCCHHHHHHH
RRVLRLALLVALLAVVGIWYLPLAFVAGAVAIIGREWIAFSGHRADRARPPRFARHSQGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHCCCCE
VIVGVLPGSKAEKMGLQIGEIIMKANGVHVRTEAEFYEELQRNRAFCKLDVIGHNGEVRF
EEEEECCCCCHHHHCCHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEEEEECCCCCEEE
VQGALYEDEHHELGLLFVHNRGASASEAVS
EECCCCCCCCCCEEEEEEECCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]