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The map label for this gene is sodC2 [H]

Identifier: 138896521

GI number: 138896521

Start: 2994260

End: 2994784

Strand: Reverse

Name: sodC2 [H]

Synonym: GTNG_2884

Alternate gene names: 138896521

Gene position: 2994784-2994260 (Counterclockwise)

Preceding gene: 138896522

Following gene: 138896519

Centisome position: 84.35

GC content: 53.52

Gene sequence:

>525_bases
GTGTTGCAGGGAAAATATGGGATTCTTTTGGCTGTGGCGCTCGTTTTAGCTGGCTGCGGCCAACAGAGCGGTATGAGTCG
GACGGTGGAGATGATCAATGCCGACAGTGATCCGATTGGCACGATTGAACTGACGGAACAAGCGGAGGGAGTCCGGCTGA
AGCTTGACTTAGAAGGGCTTCCGCCAGGAGAGCATGCCATTCATATTCATGAAAAAGGAAGTTGCGAGCCGCCCGATTTT
CAATCGGCTGGCGGACATTACAACCCTGACGGGAAAAAGCACGGACTTCTCCACCCAGAAGGCGCGCATGCCGGTGATTT
GCCAAACATTATTGTCAAAGAGGACGGCACGGTCAACGTCGAACTGACGGCGCCGAACGTGACGTTAAAAGAAGGAGAAA
AAGGGTCGTTGTTGACGAAGGACGGAACGTCAATCGTTATTCATGCCAAGAAAGACGACGGCATGACCCAACCGGCGGGA
GATGCCGACGAGCGCATCGCCTGCGGGAAAATCAAGTCATCTTGA

Upstream 100 bases:

>100_bases
GTATGGCAACAAGGACGAGTCCGGGCCGAGGTCGGATGTATAAAATGGGCTCCCTTCGGCAATACTGGCGGGTAACATCT
GCCATGCTGGGGGGAGTTTT

Downstream 100 bases:

>100_bases
ACGCTCTCTCCTGCACTTCCGGGGGAGGCATCGCGGTTTGAGATCATAAAAAGGTGTCCCAACATAAGCAACGGGACACC
TTTTTTATTGAGGAGCGACA

Product: superoxide dismutase (Cu-Zn)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MLQGKYGILLAVALVLAGCGQQSGMSRTVEMINADSDPIGTIELTEQAEGVRLKLDLEGLPPGEHAIHIHEKGSCEPPDF
QSAGGHYNPDGKKHGLLHPEGAHAGDLPNIIVKEDGTVNVELTAPNVTLKEGEKGSLLTKDGTSIVIHAKKDDGMTQPAG
DADERIACGKIKSS

Sequences:

>Translated_174_residues
MLQGKYGILLAVALVLAGCGQQSGMSRTVEMINADSDPIGTIELTEQAEGVRLKLDLEGLPPGEHAIHIHEKGSCEPPDF
QSAGGHYNPDGKKHGLLHPEGAHAGDLPNIIVKEDGTVNVELTAPNVTLKEGEKGSLLTKDGTSIVIHAKKDDGMTQPAG
DADERIACGKIKSS
>Mature_174_residues
MLQGKYGILLAVALVLAGCGQQSGMSRTVEMINADSDPIGTIELTEQAEGVRLKLDLEGLPPGEHAIHIHEKGSCEPPDF
QSAGGHYNPDGKKHGLLHPEGAHAGDLPNIIVKEDGTVNVELTAPNVTLKEGEKGSLLTKDGTSIVIHAKKDDGMTQPAG
DADERIACGKIKSS

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=180, Percent_Identity=38.3333333333333, Blast_Score=88, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71981876, Length=161, Percent_Identity=34.1614906832298, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17554806, Length=142, Percent_Identity=34.5070422535211, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71981879, Length=157, Percent_Identity=34.3949044585987, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85725006, Length=191, Percent_Identity=30.3664921465969, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007680, Length=140, Percent_Identity=36.4285714285714, Blast_Score=70, Evalue=7e-13,
Organism=Drosophila melanogaster, GI45551081, Length=140, Percent_Identity=36.4285714285714, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24652737, Length=140, Percent_Identity=36.4285714285714, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI17136496, Length=153, Percent_Identity=33.9869281045752, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 18232; Mature: 18232

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00087 SOD_CU_ZN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQGKYGILLAVALVLAGCGQQSGMSRTVEMINADSDPIGTIELTEQAEGVRLKLDLEGL
CCCCCHHHHHHHHHHHHCCCCCCCCHHEEHEECCCCCCCEEEEECCCCCCEEEEEEECCC
PPGEHAIHIHEKGSCEPPDFQSAGGHYNPDGKKHGLLHPEGAHAGDLPNIIVKEDGTVNV
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEE
ELTAPNVTLKEGEKGSLLTKDGTSIVIHAKKDDGMTQPAGDADERIACGKIKSS
EEECCCEEEECCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCC
>Mature Secondary Structure
MLQGKYGILLAVALVLAGCGQQSGMSRTVEMINADSDPIGTIELTEQAEGVRLKLDLEGL
CCCCCHHHHHHHHHHHHCCCCCCCCHHEEHEECCCCCCCEEEEECCCCCCEEEEEEECCC
PPGEHAIHIHEKGSCEPPDFQSAGGHYNPDGKKHGLLHPEGAHAGDLPNIIVKEDGTVNV
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEE
ELTAPNVTLKEGEKGSLLTKDGTSIVIHAKKDDGMTQPAGDADERIACGKIKSS
EEECCCEEEECCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]