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The map label for this gene is lytT [H]

Identifier: 138896422

GI number: 138896422

Start: 2903553

End: 2904200

Strand: Reverse

Name: lytT [H]

Synonym: GTNG_2785

Alternate gene names: 138896422

Gene position: 2904200-2903553 (Counterclockwise)

Preceding gene: 138896424

Following gene: 138896421

Centisome position: 81.8

GC content: 49.07

Gene sequence:

>648_bases
ATGGATTCGCGGCTTGTTTCAGCCATCAGCCAAGTGGTGAACGAATTGTTTCCCGTTGAAGCATCGCTTGCCATTTCGGA
TGACCGGCGGTACATTTACTACCAGCCGAGCAGACAAATTGATTTGAAAATCCGTCCAGGGGATGAAATTAAGCCGGATT
CGGTGACATACAAAGCGTTGGTAATCCGCCGGAAGATTGAGGAACAAAAGGATAGCCGGGTGTTTGGCGTTCCGTATTTC
GGCGTGTCGGTTCCGATTTTAGAAGACGGCGTGCCAAAAGGGTGTGTGACCGCTGTTTGGCCGAAAAGGCCGCTTCTGGC
GACATCGTATTTGACTGTACGGACGATGGATCGGTGGATTCCGATTCCGTTTGAAGCGGTTGTGTATTTGGAGGCGCAAA
ACCGAAAGACATTTGTGAAAGCGATGCATGCCGAAGGGTATCATAAATACAATTTGACCGAATTGGAGTTTTCGCTTCCC
GGCCATCGGTTTGTCCGCTGTCATCGGTCGTATATTGTCAATGTCGATTCTATCGCGGAAATTCACCCGGATTCACACTC
CACGTTTTTGCTTGTGATGAAAGATGGCTCCAAAGTGCCTGTCAGCCAAACGTATGCGAGCCATTTTCGAAGATTGCTCG
GCTTTTGA

Upstream 100 bases:

>100_bases
TTTCTCGCTAAAAATGGATTCATTTCCCTTCCTGTTTGACAAACACACTAGGCTCGCTTGAAAATAAAGGTGTGGCCATG
GTTTGCGAGAGGTGAGGCGT

Downstream 100 bases:

>100_bases
TGAAACCGCCGATACGGGCGGCTATTTTTTTTGGTAACGAGACAGGTTGTCGAAAATCGCTGCGTCGTGGCCATGTTGAT
TCTCGAAACCTTCAAACATC

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MDSRLVSAISQVVNELFPVEASLAISDDRRYIYYQPSRQIDLKIRPGDEIKPDSVTYKALVIRRKIEEQKDSRVFGVPYF
GVSVPILEDGVPKGCVTAVWPKRPLLATSYLTVRTMDRWIPIPFEAVVYLEAQNRKTFVKAMHAEGYHKYNLTELEFSLP
GHRFVRCHRSYIVNVDSIAEIHPDSHSTFLLVMKDGSKVPVSQTYASHFRRLLGF

Sequences:

>Translated_215_residues
MDSRLVSAISQVVNELFPVEASLAISDDRRYIYYQPSRQIDLKIRPGDEIKPDSVTYKALVIRRKIEEQKDSRVFGVPYF
GVSVPILEDGVPKGCVTAVWPKRPLLATSYLTVRTMDRWIPIPFEAVVYLEAQNRKTFVKAMHAEGYHKYNLTELEFSLP
GHRFVRCHRSYIVNVDSIAEIHPDSHSTFLLVMKDGSKVPVSQTYASHFRRLLGF
>Mature_215_residues
MDSRLVSAISQVVNELFPVEASLAISDDRRYIYYQPSRQIDLKIRPGDEIKPDSVTYKALVIRRKIEEQKDSRVFGVPYF
GVSVPILEDGVPKGCVTAVWPKRPLLATSYLTVRTMDRWIPIPFEAVVYLEAQNRKTFVKAMHAEGYHKYNLTELEFSLP
GHRFVRCHRSYIVNVDSIAEIHPDSHSTFLLVMKDGSKVPVSQTYASHFRRLLGF

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=98, Percent_Identity=37.7551020408163, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24689; Mature: 24689

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSRLVSAISQVVNELFPVEASLAISDDRRYIYYQPSRQIDLKIRPGDEIKPDSVTYKAL
CCHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCHHHHH
VIRRKIEEQKDSRVFGVPYFGVSVPILEDGVPKGCVTAVWPKRPLLATSYLTVRTMDRWI
HHHHHHHHHHCCEEEECCCCCCCCEEECCCCCCCCEEEECCCCCCEEEHEEEEEECCCCC
PIPFEAVVYLEAQNRKTFVKAMHAEGYHKYNLTELEFSLPGHRFVRCHRSYIVNVDSIAE
CCCCEEEEEEEECCCEEEEHHHHCCCEEECCCEEEEEECCCHHHEEEEHHEEECHHHHEE
IHPDSHSTFLLVMKDGSKVPVSQTYASHFRRLLGF
ECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDSRLVSAISQVVNELFPVEASLAISDDRRYIYYQPSRQIDLKIRPGDEIKPDSVTYKAL
CCHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCHHHHH
VIRRKIEEQKDSRVFGVPYFGVSVPILEDGVPKGCVTAVWPKRPLLATSYLTVRTMDRWI
HHHHHHHHHHCCEEEECCCCCCCCEEECCCCCCCCEEEECCCCCCEEEHEEEEEECCCCC
PIPFEAVVYLEAQNRKTFVKAMHAEGYHKYNLTELEFSLPGHRFVRCHRSYIVNVDSIAE
CCCCEEEEEEEECCCEEEEHHHHCCCEEECCCEEEEEECCCHHHEEEEHHEEECHHHHEE
IHPDSHSTFLLVMKDGSKVPVSQTYASHFRRLLGF
ECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]