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The map label for this gene is glgB [H]

Identifier: 138896419

GI number: 138896419

Start: 2898367

End: 2900367

Strand: Reverse

Name: glgB [H]

Synonym: GTNG_2782

Alternate gene names: 138896419

Gene position: 2900367-2898367 (Counterclockwise)

Preceding gene: 138896421

Following gene: 138896418

Centisome position: 81.69

GC content: 48.88

Gene sequence:

>2001_bases
ATGTGTGGCCATCATCTTGCTTTGGAAAGGATGCGATACGGTTTGATTGCGGCGAATCCGACGGATTTGGAAGTGTATTT
GTTTCATGAAGGCAGCTTGTATAAAAGTTACGAGCTGTTTGGCGCCCATGTGATTAATGAGGGCGGGAAGGTCGGCACCC
GTTTTTGTGTTTGGGCGCCGCACGCGCGCGAGGTGCGTCTTGTCGGCAGTTTCAACGATTGGGACGGGACGGATTTTCGC
CTTGAGAAAGTGAATGATGAAGGGGTATGGACGATTGTTGTCCCCGAAAACTTGGAAGGGCATTTATATAAGTATGAGAT
TGTTACGCCGGACGGACAGGTGCTGTTCAAAGCCGACCCGTACGCTTTTTACTCCGAATTGCGTCCTCATACCGCCTCGA
TTGCCTACGATCTGAAAGGATACCAGTGGAACGATCAATCTTGGAAGCGGAAGAAGCGACGAAAACGGATTTATGATCAG
CCCATGGTGATTTATGAACTCCATTTCGGTTCGTGGAAGAAAAAAGATGGGCGTTTTTATACGTACCGTGAGATGGCCGA
TGAACTGATCCCGTATGTGCTCGATCATGGGTTTACGCACATTGAGTTGCTTCCTCTTGTCGAGCATCCGCTCGACCGCT
CGTGGGGCTATCAAGGAACAGGGTATTATGCGGTAACGAGTCGCTATGGTACGCCACACGACTTCATGTACTTCGTCGAC
CGTTGCCATCAGGCGGGAATCGGGGTCATTATGGACTGGGTGCCGGGGCATTTTTGCAAGGACGCCCATGGGTTATATAT
GTTTGATGGCGCCCCGACGTATGAATACGCGAATGAAAAAGACCGAGAAAATTACGTTTGGGGGACGGCCAATTTTGATT
TAGGCAAGCCGGAAGTGCGCAGTTTTCTCATCTCGAACGCATTGTTTTGGCTCGAGTATTACCATATCGACGGGTTCCGG
GTCGATGCGGTTGCCAATATGCTTTATTGGCCGAACAATGACAGGCTGTACGAGAACCCGTATGCGGTCGAGTTTTTGCG
CAAGTTAAACGAAGCGGTGTTTGCCTATGATCCGAATGTGCTGATGATTGCGGAAGATTCGACTGACTGGCCGAAGGTGA
CCGCGCCGACGTATGAAGGCGGACTCGGCTTTAATTATAAATGGAACATGGGCTGGATGAACGACATGCTGAAGTACATG
GAAACACCGCCGTATGAGCGGAGGCATGTGCATAACCAAGTAACGTTCTCCCTCCTTTATGCGTATTCGGAAAATTTCAT
TTTGCCGTTTTCCCACGATGAAGTCGTGCATGGCAAAAAATCGCTGCTCAATAAAATGCCAGGGTCGTATGAAGAGAAGT
TCGCCCAGCTGCGCCTCTTGTACGGCTACATGATGGCTCATCCGGGGAAAAAGCTGTTGTTTATGGGCAATGAATTTGCT
CAGTTTGATGAATGGAAGTTTGAGGATGAACTCGATTGGGTGCTGTTTGATTTTGAGCTGCACCGGAAGATGAACGATTA
CATGAAAGAGTTAATCGCCTGCTATAAACGGTATAAGCCGTTTTACGAATTGGATCATGACCCGCAAGGATTTGAATGGA
TTGACGTTCACAACGCTGAACAAAGCATTTTCTCATTCATCCGCCGCGGGAAAAAAGAAGATGATGTGCTTGTTATTGTT
TGCAATTTCACAAATCAGGCGTATGACGACTACAAAGTTGGAGTGCCGTTGCTCGTACCGTATCGGGAAGTGCTGAATAG
CGATGCGGTCACGTTTGGTGGATCGGGGCATGTCAATGGGAAACGGCTTTCCGCCTTCAATGAGCCGTTTCATGGTAAAC
CATACCACGTGCGCATGACGATTCCGCCATTTGGCATTTCCATTTTACGGCCAGTGCAAAAACGAGGGGAGAGAAAGCGA
AATGAAAAAGAAATGCATCGCCATGTTATTGGCCGGCGGGCAAGGAAGTCGGCTTCGCTCGCTGACGACAAACATCGCTA
A

Upstream 100 bases:

>100_bases
AAAAATTTATCGACAAATCCCACAATTTTTGATGGATTTTGTCAAAAAATATAGATAATTTTTTCGAGGAATGCAACGGT
GAAGTGGCGAATAAGGAATA

Downstream 100 bases:

>100_bases
ACCGGCCGTGCCATTCGGCGGGAAGTACCGGATCATTGATTTTACATTAAGCAATTGCACGAATTCCGGCATTGATACGG
TCGGAGTGCTGACTCAATAT

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]

Number of amino acids: Translated: 666; Mature: 666

Protein sequence:

>666_residues
MCGHHLALERMRYGLIAANPTDLEVYLFHEGSLYKSYELFGAHVINEGGKVGTRFCVWAPHAREVRLVGSFNDWDGTDFR
LEKVNDEGVWTIVVPENLEGHLYKYEIVTPDGQVLFKADPYAFYSELRPHTASIAYDLKGYQWNDQSWKRKKRRKRIYDQ
PMVIYELHFGSWKKKDGRFYTYREMADELIPYVLDHGFTHIELLPLVEHPLDRSWGYQGTGYYAVTSRYGTPHDFMYFVD
RCHQAGIGVIMDWVPGHFCKDAHGLYMFDGAPTYEYANEKDRENYVWGTANFDLGKPEVRSFLISNALFWLEYYHIDGFR
VDAVANMLYWPNNDRLYENPYAVEFLRKLNEAVFAYDPNVLMIAEDSTDWPKVTAPTYEGGLGFNYKWNMGWMNDMLKYM
ETPPYERRHVHNQVTFSLLYAYSENFILPFSHDEVVHGKKSLLNKMPGSYEEKFAQLRLLYGYMMAHPGKKLLFMGNEFA
QFDEWKFEDELDWVLFDFELHRKMNDYMKELIACYKRYKPFYELDHDPQGFEWIDVHNAEQSIFSFIRRGKKEDDVLVIV
CNFTNQAYDDYKVGVPLLVPYREVLNSDAVTFGGSGHVNGKRLSAFNEPFHGKPYHVRMTIPPFGISILRPVQKRGERKR
NEKEMHRHVIGRRARKSASLADDKHR

Sequences:

>Translated_666_residues
MCGHHLALERMRYGLIAANPTDLEVYLFHEGSLYKSYELFGAHVINEGGKVGTRFCVWAPHAREVRLVGSFNDWDGTDFR
LEKVNDEGVWTIVVPENLEGHLYKYEIVTPDGQVLFKADPYAFYSELRPHTASIAYDLKGYQWNDQSWKRKKRRKRIYDQ
PMVIYELHFGSWKKKDGRFYTYREMADELIPYVLDHGFTHIELLPLVEHPLDRSWGYQGTGYYAVTSRYGTPHDFMYFVD
RCHQAGIGVIMDWVPGHFCKDAHGLYMFDGAPTYEYANEKDRENYVWGTANFDLGKPEVRSFLISNALFWLEYYHIDGFR
VDAVANMLYWPNNDRLYENPYAVEFLRKLNEAVFAYDPNVLMIAEDSTDWPKVTAPTYEGGLGFNYKWNMGWMNDMLKYM
ETPPYERRHVHNQVTFSLLYAYSENFILPFSHDEVVHGKKSLLNKMPGSYEEKFAQLRLLYGYMMAHPGKKLLFMGNEFA
QFDEWKFEDELDWVLFDFELHRKMNDYMKELIACYKRYKPFYELDHDPQGFEWIDVHNAEQSIFSFIRRGKKEDDVLVIV
CNFTNQAYDDYKVGVPLLVPYREVLNSDAVTFGGSGHVNGKRLSAFNEPFHGKPYHVRMTIPPFGISILRPVQKRGERKR
NEKEMHRHVIGRRARKSASLADDKHR
>Mature_666_residues
MCGHHLALERMRYGLIAANPTDLEVYLFHEGSLYKSYELFGAHVINEGGKVGTRFCVWAPHAREVRLVGSFNDWDGTDFR
LEKVNDEGVWTIVVPENLEGHLYKYEIVTPDGQVLFKADPYAFYSELRPHTASIAYDLKGYQWNDQSWKRKKRRKRIYDQ
PMVIYELHFGSWKKKDGRFYTYREMADELIPYVLDHGFTHIELLPLVEHPLDRSWGYQGTGYYAVTSRYGTPHDFMYFVD
RCHQAGIGVIMDWVPGHFCKDAHGLYMFDGAPTYEYANEKDRENYVWGTANFDLGKPEVRSFLISNALFWLEYYHIDGFR
VDAVANMLYWPNNDRLYENPYAVEFLRKLNEAVFAYDPNVLMIAEDSTDWPKVTAPTYEGGLGFNYKWNMGWMNDMLKYM
ETPPYERRHVHNQVTFSLLYAYSENFILPFSHDEVVHGKKSLLNKMPGSYEEKFAQLRLLYGYMMAHPGKKLLFMGNEFA
QFDEWKFEDELDWVLFDFELHRKMNDYMKELIACYKRYKPFYELDHDPQGFEWIDVHNAEQSIFSFIRRGKKEDDVLVIV
CNFTNQAYDDYKVGVPLLVPYREVLNSDAVTFGGSGHVNGKRLSAFNEPFHGKPYHVRMTIPPFGISILRPVQKRGERKR
NEKEMHRHVIGRRARKSASLADDKHR

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=655, Percent_Identity=27.6335877862595, Blast_Score=191, Evalue=2e-48,
Organism=Escherichia coli, GI1789839, Length=618, Percent_Identity=44.6601941747573, Blast_Score=533, Evalue=1e-152,
Organism=Caenorhabditis elegans, GI17554896, Length=639, Percent_Identity=26.1345852895149, Blast_Score=184, Evalue=9e-47,
Organism=Caenorhabditis elegans, GI32564391, Length=607, Percent_Identity=25.3706754530478, Blast_Score=163, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6320826, Length=634, Percent_Identity=26.6561514195584, Blast_Score=186, Evalue=8e-48,
Organism=Drosophila melanogaster, GI28573410, Length=640, Percent_Identity=26.71875, Blast_Score=197, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 78470; Mature: 78470

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCGHHLALERMRYGLIAANPTDLEVYLFHEGSLYKSYELFGAHVINEGGKVGTRFCVWAP
CCCHHHHHHHHHCCEEECCCCCEEEEEEECCCCEEHHHHHHHHEECCCCCCCCEEEEECC
HAREVRLVGSFNDWDGTDFRLEKVNDEGVWTIVVPENLEGHLYKYEIVTPDGQVLFKADP
CCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEECC
YAFYSELRPHTASIAYDLKGYQWNDQSWKRKKRRKRIYDQPMVIYELHFGSWKKKDGRFY
HHHHHHCCCCCEEEEEEECCEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEE
TYREMADELIPYVLDHGFTHIELLPLVEHPLDRSWGYQGTGYYAVTSRYGTPHDFMYFVD
EHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
RCHQAGIGVIMDWVPGHFCKDAHGLYMFDGAPTYEYANEKDRENYVWGTANFDLGKPEVR
HHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHH
SFLISNALFWLEYYHIDGFRVDAVANMLYWPNNDRLYENPYAVEFLRKLNEAVFAYDPNV
HHHHHHHEEEEEEEEECCEEHHHHHHEEEECCCCCEECCCHHHHHHHHHCCEEEEECCCE
LMIAEDSTDWPKVTAPTYEGGLGFNYKWNMGWMNDMLKYMETPPYERRHVHNQVTFSLLY
EEEECCCCCCCEEECCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHEEEEE
AYSENFILPFSHDEVVHGKKSLLNKMPGSYEEKFAQLRLLYGYMMAHPGKKLLFMGNEFA
EECCCEEEECCCCHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHH
QFDEWKFEDELDWVLFDFELHRKMNDYMKELIACYKRYKPFYELDHDPQGFEWIDVHNAE
HCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEECCHH
QSIFSFIRRGKKEDDVLVIVCNFTNQAYDDYKVGVPLLVPYREVLNSDAVTFGGSGHVNG
HHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECHHHHCCCCCEEECCCCCCCC
KRLSAFNEPFHGKPYHVRMTIPPFGISILRPVQKRGERKRNEKEMHRHVIGRRARKSASL
CEEHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
ADDKHR
CCCCCC
>Mature Secondary Structure
MCGHHLALERMRYGLIAANPTDLEVYLFHEGSLYKSYELFGAHVINEGGKVGTRFCVWAP
CCCHHHHHHHHHCCEEECCCCCEEEEEEECCCCEEHHHHHHHHEECCCCCCCCEEEEECC
HAREVRLVGSFNDWDGTDFRLEKVNDEGVWTIVVPENLEGHLYKYEIVTPDGQVLFKADP
CCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEECC
YAFYSELRPHTASIAYDLKGYQWNDQSWKRKKRRKRIYDQPMVIYELHFGSWKKKDGRFY
HHHHHHCCCCCEEEEEEECCEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEE
TYREMADELIPYVLDHGFTHIELLPLVEHPLDRSWGYQGTGYYAVTSRYGTPHDFMYFVD
EHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
RCHQAGIGVIMDWVPGHFCKDAHGLYMFDGAPTYEYANEKDRENYVWGTANFDLGKPEVR
HHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHH
SFLISNALFWLEYYHIDGFRVDAVANMLYWPNNDRLYENPYAVEFLRKLNEAVFAYDPNV
HHHHHHHEEEEEEEEECCEEHHHHHHEEEECCCCCEECCCHHHHHHHHHCCEEEEECCCE
LMIAEDSTDWPKVTAPTYEGGLGFNYKWNMGWMNDMLKYMETPPYERRHVHNQVTFSLLY
EEEECCCCCCCEEECCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHEEEEE
AYSENFILPFSHDEVVHGKKSLLNKMPGSYEEKFAQLRLLYGYMMAHPGKKLLFMGNEFA
EECCCEEEECCCCHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHH
QFDEWKFEDELDWVLFDFELHRKMNDYMKELIACYKRYKPFYELDHDPQGFEWIDVHNAE
HCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEECCHH
QSIFSFIRRGKKEDDVLVIVCNFTNQAYDDYKVGVPLLVPYREVLNSDAVTFGGSGHVNG
HHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECHHHHCCCCCEEECCCCCCCC
KRLSAFNEPFHGKPYHVRMTIPPFGISILRPVQKRGERKRNEKEMHRHVIGRRARKSASL
CEEHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
ADDKHR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1296817 [H]