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The map label for this gene is sdhC [H]

Identifier: 138896238

GI number: 138896238

Start: 2710040

End: 2710648

Strand: Reverse

Name: sdhC [H]

Synonym: GTNG_2601

Alternate gene names: 138896238

Gene position: 2710648-2710040 (Counterclockwise)

Preceding gene: 138896241

Following gene: 138896237

Centisome position: 76.35

GC content: 43.51

Gene sequence:

>609_bases
ATGGCAGGGAATCGCGAGTTTTATTACCGCCGGCTCCATTCGCTGCTTGGGGTTATTCCCGTTGGCATTTTTTTAGTGCA
GCACTTGATCGTCAACCATTTTGCGACGCGTGGGCCGGAAGCGTTTAACCGAGCGGCTGCATTTATGGAGAATTTGCCGT
TCCGTATTTTCTTAGAAATTTTTGTTATTCTTCTTCCATTGGTGTTCCACGCTGTATACGGTATTTATATTGCGTTTACA
GCCAAATTCAACACCCGTCAGTACGGCTATTTCCGTAACTGGATGTTTATGCTTCAGCGGATCACAGGGATTATTACGTT
GATTTTTGTCGTCTGGCATGTGTATGAAACAAGGGTGCAAGCTGCCTTTGGTGCCGAAGTGAACTATGATATGATGGCGA
ATATCGTCGATAATCCGATCATGCTTTGGTTTTATATTGTCGGAATTTTATCAACCGTGTTTCACTTCGCTAACGGTTTA
TGGTCGTTCTTTGTCAGCTGGGGGTTAATCGTGTCTCCTCGTTCACAACAAGTGTTTACGTACATTACGATGATTATCTT
TTTCGCAATTTCGATTATCGGTATTCGCGCCATTTTAGCATTTGCGTAG

Upstream 100 bases:

>100_bases
ATGAATGTGACAAAGCGAATATGGAAATGGAAGGCGTTTCTGTTTCCATTCTTTAGCGAGGGGGCACGCATTTTATTACT
AGTCAAAAGGGGGCTTACAT

Downstream 100 bases:

>100_bases
GACAATCCTTTCATTCGAGACGTTTTGATGATGAACCGCTGCGTTGGCTGATAACGGATCGCGTTGCAGCCGTTCGTCGA
ACGACCGCTTGGTCGATGGG

Product: succinate dehydrogenase cytochrome b-558

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-558 [H]

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAGNREFYYRRLHSLLGVIPVGIFLVQHLIVNHFATRGPEAFNRAAAFMENLPFRIFLEIFVILLPLVFHAVYGIYIAFT
AKFNTRQYGYFRNWMFMLQRITGIITLIFVVWHVYETRVQAAFGAEVNYDMMANIVDNPIMLWFYIVGILSTVFHFANGL
WSFFVSWGLIVSPRSQQVFTYITMIIFFAISIIGIRAILAFA

Sequences:

>Translated_202_residues
MAGNREFYYRRLHSLLGVIPVGIFLVQHLIVNHFATRGPEAFNRAAAFMENLPFRIFLEIFVILLPLVFHAVYGIYIAFT
AKFNTRQYGYFRNWMFMLQRITGIITLIFVVWHVYETRVQAAFGAEVNYDMMANIVDNPIMLWFYIVGILSTVFHFANGL
WSFFVSWGLIVSPRSQQVFTYITMIIFFAISIIGIRAILAFA
>Mature_201_residues
AGNREFYYRRLHSLLGVIPVGIFLVQHLIVNHFATRGPEAFNRAAAFMENLPFRIFLEIFVILLPLVFHAVYGIYIAFTA
KFNTRQYGYFRNWMFMLQRITGIITLIFVVWHVYETRVQAAFGAEVNYDMMANIVDNPIMLWFYIVGILSTVFHFANGLW
SFFVSWGLIVSPRSQQVFTYITMIIFFAISIIGIRAILAFA

Specific function: Di-heme cytochrome of the succinate dehydrogenase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b558 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011138
- InterPro:   IPR016002
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 23506; Mature: 23375

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGNREFYYRRLHSLLGVIPVGIFLVQHLIVNHFATRGPEAFNRAAAFMENLPFRIFLEI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHH
FVILLPLVFHAVYGIYIAFTAKFNTRQYGYFRNWMFMLQRITGIITLIFVVWHVYETRVQ
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAFGAEVNYDMMANIVDNPIMLWFYIVGILSTVFHFANGLWSFFVSWGLIVSPRSQQVFT
HHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHH
YITMIIFFAISIIGIRAILAFA
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AGNREFYYRRLHSLLGVIPVGIFLVQHLIVNHFATRGPEAFNRAAAFMENLPFRIFLEI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHH
FVILLPLVFHAVYGIYIAFTAKFNTRQYGYFRNWMFMLQRITGIITLIFVVWHVYETRVQ
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAFGAEVNYDMMANIVDNPIMLWFYIVGILSTVFHFANGLWSFFVSWGLIVSPRSQQVFT
HHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHH
YITMIIFFAISIIGIRAILAFA
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3086287; 8969504; 9384377; 3027051; 3036777; 2120540 [H]