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The map label for this gene is xylR [H]

Identifier: 138895997

GI number: 138895997

Start: 2476515

End: 2477717

Strand: Reverse

Name: xylR [H]

Synonym: GTNG_2360

Alternate gene names: 138895997

Gene position: 2477717-2476515 (Counterclockwise)

Preceding gene: 138895998

Following gene: 138895995

Centisome position: 69.79

GC content: 54.36

Gene sequence:

>1203_bases
ATGACTAGTCACGTGCGGACAGGAAACATTACTCTTGTCAAAAAAATGAATAAACAGCTTGTGTTGAAATTGATTCGCGA
CCAACATCCGATTTCACGCGCCGACATTGCGAAAATAACCGGATTGAACAAAGCGACCGTTTCCGCTCTCGTCGATGAAC
TCATTGACGAGCATTTGGTCCACGAAAGTGGAATCGGCGTTTCGACTGGCGGCCGACGCCCGCTGATGCTTCGCTTTAAC
GCCGACGCCGGCTCGCTCATCGGCGTTGAGCTTGGCGTCAATTATTTATATGCTGTTTTGACGAACTTAAATGCCGAAAT
CATTTGGGAGCAGCGGCGCTCGTTCCGCCCAGAGGAGGGGCAGGAGGCAATTGTGAGTGAGATGGTCGAACTGATTGAGG
CGGCTATCCGTCGAGCGCCAGCAACGCCGTACGGTGTGATGGGGATCGGGATCGGTGTCCCTGGCATCGTTCACACAGAA
AGCGGGACGGTCATTTTCGCGCCGAACTTGCGCTGGGGCGATGTGTCACTTGCCTCGGCTTTGCAAAAACAGTGGCCGCA
ATATCCGGTCATCGTCGAAAATGAGGCAAAGCTGGCGGCGCTCGGAGAAAAATGGTTCGGCGCCGGCAAGGAGTTTGCCC
ATTTTGTTTATATTAGCGCCGGCATTGGCATCGGCGCCGGTGTCGTCCTTCATCATCAGCTGTATCGAGGGGTGAACGGG
CTGGCGGGTGAAATCGGCCATCATACGATCGACTTAAACGGTGTCCGCTGCAACTGCGGCAACATCGGCTGCTGGGAAAT
GTACGCGTCGCAAAAATATATTGAACGCCGTTTGGCGGAAGAGGGACGTGTAGAGTGGCTTGACGACCGCTTTTCCATCG
CCGCGATGGCGTTGGCGGCCGAAAGCGATGACCAGCTGGCGCGTATTTTGGAAGAAACGGGCCGCTATCTCGGTATCGGG
CTGCTGCAGGTGATTTATGCGTACAACCCAGAGGCAGTCATTATCGGCGGTCCGCTCGCCAGCGCCGGTGATTATATACT
CCGAGCAGCGCGCAAAGAAGTGGAAGAGCGCATTCTCGTCAAAAATGAAAATGAGCCGTACATGATTGTCTCGGAGCTGA
AAGAAAAAAGTTGCGCCATTGGCGCAGCCGCATCGGTATTAGAGGCGGTCGTTCTGCCGCCGGAATTTGAATCGTCGCTT
TAA

Upstream 100 bases:

>100_bases
CGGTGCCATCGTTCAGTGAAGAAGAAATGGCGCGGCTTCGCCAGTTTTACGAGACTGAAGTGCATCCGCACATTCGCGGG
GCATACTAAACGAAAAAAGG

Downstream 100 bases:

>100_bases
TCGCTGCAAGCGAAAAGAGGCGTTCTGCTTTTTTCTAGCAGAGCGCCTCTTTTTTTGCAATAGCTAGGAATTTTTCTTTA
CTTTCCCCGTCCATTTTTTA

Product: putative xylose repressor gene

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MTSHVRTGNITLVKKMNKQLVLKLIRDQHPISRADIAKITGLNKATVSALVDELIDEHLVHESGIGVSTGGRRPLMLRFN
ADAGSLIGVELGVNYLYAVLTNLNAEIIWEQRRSFRPEEGQEAIVSEMVELIEAAIRRAPATPYGVMGIGIGVPGIVHTE
SGTVIFAPNLRWGDVSLASALQKQWPQYPVIVENEAKLAALGEKWFGAGKEFAHFVYISAGIGIGAGVVLHHQLYRGVNG
LAGEIGHHTIDLNGVRCNCGNIGCWEMYASQKYIERRLAEEGRVEWLDDRFSIAAMALAAESDDQLARILEETGRYLGIG
LLQVIYAYNPEAVIIGGPLASAGDYILRAARKEVEERILVKNENEPYMIVSELKEKSCAIGAAASVLEAVVLPPEFESSL

Sequences:

>Translated_400_residues
MTSHVRTGNITLVKKMNKQLVLKLIRDQHPISRADIAKITGLNKATVSALVDELIDEHLVHESGIGVSTGGRRPLMLRFN
ADAGSLIGVELGVNYLYAVLTNLNAEIIWEQRRSFRPEEGQEAIVSEMVELIEAAIRRAPATPYGVMGIGIGVPGIVHTE
SGTVIFAPNLRWGDVSLASALQKQWPQYPVIVENEAKLAALGEKWFGAGKEFAHFVYISAGIGIGAGVVLHHQLYRGVNG
LAGEIGHHTIDLNGVRCNCGNIGCWEMYASQKYIERRLAEEGRVEWLDDRFSIAAMALAAESDDQLARILEETGRYLGIG
LLQVIYAYNPEAVIIGGPLASAGDYILRAARKEVEERILVKNENEPYMIVSELKEKSCAIGAAASVLEAVVLPPEFESSL
>Mature_399_residues
TSHVRTGNITLVKKMNKQLVLKLIRDQHPISRADIAKITGLNKATVSALVDELIDEHLVHESGIGVSTGGRRPLMLRFNA
DAGSLIGVELGVNYLYAVLTNLNAEIIWEQRRSFRPEEGQEAIVSEMVELIEAAIRRAPATPYGVMGIGIGVPGIVHTES
GTVIFAPNLRWGDVSLASALQKQWPQYPVIVENEAKLAALGEKWFGAGKEFAHFVYISAGIGIGAGVVLHHQLYRGVNGL
AGEIGHHTIDLNGVRCNCGNIGCWEMYASQKYIERRLAEEGRVEWLDDRFSIAAMALAAESDDQLARILEETGRYLGIGL
LQVIYAYNPEAVIIGGPLASAGDYILRAARKEVEERILVKNENEPYMIVSELKEKSCAIGAAASVLEAVVLPPEFESSL

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI298566325, Length=276, Percent_Identity=31.5217391304348, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI298566315, Length=276, Percent_Identity=31.5217391304348, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI4885285, Length=276, Percent_Identity=31.5217391304348, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI190014632, Length=276, Percent_Identity=31.5217391304348, Blast_Score=105, Evalue=7e-23,
Organism=Escherichia coli, GI1786891, Length=393, Percent_Identity=30.2798982188295, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787878, Length=393, Percent_Identity=25.4452926208651, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787363, Length=276, Percent_Identity=23.9130434782609, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790522, Length=253, Percent_Identity=26.4822134387352, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87082127, Length=351, Percent_Identity=21.3675213675214, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR; PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 43618; Mature: 43487

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSHVRTGNITLVKKMNKQLVLKLIRDQHPISRADIAKITGLNKATVSALVDELIDEHLV
CCCCEECCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
HESGIGVSTGGRRPLMLRFNADAGSLIGVELGVNYLYAVLTNLNAEIIWEQRRSFRPEEG
HHCCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCH
QEAIVSEMVELIEAAIRRAPATPYGVMGIGIGVPGIVHTESGTVIFAPNLRWGDVSLASA
HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCEEEECCCCCCCHHHHHH
LQKQWPQYPVIVENEAKLAALGEKWFGAGKEFAHFVYISAGIGIGAGVVLHHQLYRGVNG
HHHHCCCCCEEECCCCHHHHHHHHHHCCCCHHEEEEEEECCCCCCHHHHHHHHHHHCCCH
LAGEIGHHTIDLNGVRCNCGNIGCWEMYASQKYIERRLAEEGRVEWLDDRFSIAAMALAA
HHHHCCCEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHC
ESDDQLARILEETGRYLGIGLLQVIYAYNPEAVIIGGPLASAGDYILRAARKEVEERILV
CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEE
KNENEPYMIVSELKEKSCAIGAAASVLEAVVLPPEFESSL
ECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TSHVRTGNITLVKKMNKQLVLKLIRDQHPISRADIAKITGLNKATVSALVDELIDEHLV
CCCEECCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
HESGIGVSTGGRRPLMLRFNADAGSLIGVELGVNYLYAVLTNLNAEIIWEQRRSFRPEEG
HHCCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCH
QEAIVSEMVELIEAAIRRAPATPYGVMGIGIGVPGIVHTESGTVIFAPNLRWGDVSLASA
HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCEEEECCCCCCCHHHHHH
LQKQWPQYPVIVENEAKLAALGEKWFGAGKEFAHFVYISAGIGIGAGVVLHHQLYRGVNG
HHHHCCCCCEEECCCCHHHHHHHHHHCCCCHHEEEEEEECCCCCCHHHHHHHHHHHCCCH
LAGEIGHHTIDLNGVRCNCGNIGCWEMYASQKYIERRLAEEGRVEWLDDRFSIAAMALAA
HHHHCCCEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHC
ESDDQLARILEETGRYLGIGLLQVIYAYNPEAVIIGGPLASAGDYILRAARKEVEERILV
CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEE
KNENEPYMIVSELKEKSCAIGAAASVLEAVVLPPEFESSL
ECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8920183 [H]