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The map label for this gene is sodF [H]

Identifier: 138895856

GI number: 138895856

Start: 2339742

End: 2341091

Strand: Reverse

Name: sodF [H]

Synonym: GTNG_2215

Alternate gene names: 138895856

Gene position: 2341091-2339742 (Counterclockwise)

Preceding gene: 138895858

Following gene: 138895855

Centisome position: 65.94

GC content: 55.85

Gene sequence:

>1350_bases
ATGGACGACCAAACGTTGTTTGCCCAGTATGCGGCTGAAGTGAACGAATGGGGAGAACAAGTCAAGCAGGTGCTGGAACT
GCGCGGGGCAAGCATTGATGGCGCTTCTACACTGTTGCAGTTTATCGCCGAACATGACGGGAAGTGGACGGAAGAGGCAG
TCCGTGAGCTCACGCGCCTTGTTGATGACGTGTACGCTGCTGCGCTTCGTCACTATGCCATCGAAGCGGCTGAGTGGGGG
AAACAAGTAGAACACGCTCTATCCATGCGCGGAGCAGCGGAGGACATCGGGCTTTCTTCTTTATTGGCGCGCATTGAAGA
ACACGGCGACGAGTGGACGGAGGAAGAAATTCATGAACTGCAACTCCTTGTCGACGACGTGTACGCTCGAGCCATCCGCC
TTGTCGAACCGCTATCCGACGGGCAGGAGGAAGACTTGACGCGGCAGGAAGAAGTCTCGGCTTTGCCTGAACAGGAGGGC
GGCAACAGAGAGCAAATGAGCAAGGGAACTGAACGGTCAGGCGAACACAAGGGGGATAGCGAACAAGAGCCGGTCGTTGC
AGCTGAACGGGCGGAGCCGTTCATAGCCTCATCAACGGATTCTCCTGATGGCGAACAGCTGCATGAGGGAGATACGATGG
ACGAAGAATGGCGGCACAATGCAGACATGACAGATAAGGAGCGGCTGCCGGAGGAAGGTGTGACCGATGGTGAGCGGCAA
CGGGCGGTTTCGCCTGGCAAGCATGTGCTGCCGCCGCTGCCGTACAGCTATGACGCGCTTGAGCCCCATATTTCCGAAGA
AATTATGCGTCTCCATCATACGAAGCATCATCAAAGCTATGTCGACGGTCTGAACAAGGCGGAGCGCATGATGGCAGAGG
CGCGCCGTACGAACAATTTTGAACTGCTGAAACATTGGGAGCGAGAGGCGGCGTTCAACGGTTCAGGCCACTATTTGCAT
ACAATTTTTTGGCATAACATGCATCCGCAAGGCGGCGGCGAGCCGCGCGGGGAGCTGCGGGCGCAAATTGAACGCGACTT
CGGCAGCTTTGCTGCATTCCGACGCCACTTTACCGAAGCGGCGAAAAGCGTCGAAGGGGTTGGCTGGGCGTTGCTCGTTT
GGGTGCCGCGGGCTCATCGGCTTGAAATTTTGCAGACGGAAAAGCACCAGCTCATGACGCAATGGGATACGATTCCACTT
CTTGTGCTTGATGTGTGGGAGCATGCGTACTACTTGCAATATAAAAACGATCGGGGAGCGTATATCGAACATTGGTGGAA
CGTCGTCAACTGGCGCAATGTCGAAGCGCGCTTCGCCGAGGCACGAAAGCTGCGTTGGCAACCATTTTAA

Upstream 100 bases:

>100_bases
TGTATGTGCGGCTGGGAATTTAGGTGAATGCGGACAAGAACGATTTTCCTAGGCTGGCATACGATATGGCGAAAAAAGCG
CAGGAGGAGGTTTTTACCAA

Downstream 100 bases:

>100_bases
ACAGGCAGGGGTCTCCCCGCCTGTTTTTTTTTGAGCGGGCAAAAGCCGCCTCCCTTGCCTAGAGAGGTTTCGCTGAAAAC
ATAATGCAATTGATAGGGGG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MDDQTLFAQYAAEVNEWGEQVKQVLELRGASIDGASTLLQFIAEHDGKWTEEAVRELTRLVDDVYAAALRHYAIEAAEWG
KQVEHALSMRGAAEDIGLSSLLARIEEHGDEWTEEEIHELQLLVDDVYARAIRLVEPLSDGQEEDLTRQEEVSALPEQEG
GNREQMSKGTERSGEHKGDSEQEPVVAAERAEPFIASSTDSPDGEQLHEGDTMDEEWRHNADMTDKERLPEEGVTDGERQ
RAVSPGKHVLPPLPYSYDALEPHISEEIMRLHHTKHHQSYVDGLNKAERMMAEARRTNNFELLKHWEREAAFNGSGHYLH
TIFWHNMHPQGGGEPRGELRAQIERDFGSFAAFRRHFTEAAKSVEGVGWALLVWVPRAHRLEILQTEKHQLMTQWDTIPL
LVLDVWEHAYYLQYKNDRGAYIEHWWNVVNWRNVEARFAEARKLRWQPF

Sequences:

>Translated_449_residues
MDDQTLFAQYAAEVNEWGEQVKQVLELRGASIDGASTLLQFIAEHDGKWTEEAVRELTRLVDDVYAAALRHYAIEAAEWG
KQVEHALSMRGAAEDIGLSSLLARIEEHGDEWTEEEIHELQLLVDDVYARAIRLVEPLSDGQEEDLTRQEEVSALPEQEG
GNREQMSKGTERSGEHKGDSEQEPVVAAERAEPFIASSTDSPDGEQLHEGDTMDEEWRHNADMTDKERLPEEGVTDGERQ
RAVSPGKHVLPPLPYSYDALEPHISEEIMRLHHTKHHQSYVDGLNKAERMMAEARRTNNFELLKHWEREAAFNGSGHYLH
TIFWHNMHPQGGGEPRGELRAQIERDFGSFAAFRRHFTEAAKSVEGVGWALLVWVPRAHRLEILQTEKHQLMTQWDTIPL
LVLDVWEHAYYLQYKNDRGAYIEHWWNVVNWRNVEARFAEARKLRWQPF
>Mature_449_residues
MDDQTLFAQYAAEVNEWGEQVKQVLELRGASIDGASTLLQFIAEHDGKWTEEAVRELTRLVDDVYAAALRHYAIEAAEWG
KQVEHALSMRGAAEDIGLSSLLARIEEHGDEWTEEEIHELQLLVDDVYARAIRLVEPLSDGQEEDLTRQEEVSALPEQEG
GNREQMSKGTERSGEHKGDSEQEPVVAAERAEPFIASSTDSPDGEQLHEGDTMDEEWRHNADMTDKERLPEEGVTDGERQ
RAVSPGKHVLPPLPYSYDALEPHISEEIMRLHHTKHHQSYVDGLNKAERMMAEARRTNNFELLKHWEREAAFNGSGHYLH
TIFWHNMHPQGGGEPRGELRAQIERDFGSFAAFRRHFTEAAKSVEGVGWALLVWVPRAHRLEILQTEKHQLMTQWDTIPL
LVLDVWEHAYYLQYKNDRGAYIEHWWNVVNWRNVEARFAEARKLRWQPF

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=221, Percent_Identity=45.2488687782805, Blast_Score=189, Evalue=6e-48,
Organism=Homo sapiens, GI67782305, Length=221, Percent_Identity=45.2488687782805, Blast_Score=189, Evalue=6e-48,
Organism=Homo sapiens, GI67782309, Length=221, Percent_Identity=38.0090497737557, Blast_Score=136, Evalue=4e-32,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=39.9038461538462, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1787946, Length=190, Percent_Identity=41.0526315789474, Blast_Score=147, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=42.9292929292929, Blast_Score=172, Evalue=5e-43,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=42.6395939086294, Blast_Score=168, Evalue=5e-42,
Organism=Saccharomyces cerevisiae, GI6321796, Length=203, Percent_Identity=37.9310344827586, Blast_Score=143, Evalue=4e-35,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=43.5, Blast_Score=174, Evalue=1e-43,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 51771; Mature: 51771

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDQTLFAQYAAEVNEWGEQVKQVLELRGASIDGASTLLQFIAEHDGKWTEEAVRELTRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
VDDVYAAALRHYAIEAAEWGKQVEHALSMRGAAEDIGLSSLLARIEEHGDEWTEEEIHEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCHHHHHHHH
QLLVDDVYARAIRLVEPLSDGQEEDLTRQEEVSALPEQEGGNREQMSKGTERSGEHKGDS
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCC
EQEPVVAAERAEPFIASSTDSPDGEQLHEGDTMDEEWRHNADMTDKERLPEEGVTDGERQ
CCCCCEEHHHCCCCEECCCCCCCCHHHCCCCCCCHHHHCCCCCCHHHCCCCCCCCCCHHH
RAVSPGKHVLPPLPYSYDALEPHISEEIMRLHHTKHHQSYVDGLNKAERMMAEARRTNNF
HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ELLKHWEREAAFNGSGHYLHTIFWHNMHPQGGGEPRGELRAQIERDFGSFAAFRRHFTEA
HHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AKSVEGVGWALLVWVPRAHRLEILQTEKHQLMTQWDTIPLLVLDVWEHAYYLQYKNDRGA
HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEEECCCCH
YIEHWWNVVNWRNVEARFAEARKLRWQPF
HHHHHHHHHCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDDQTLFAQYAAEVNEWGEQVKQVLELRGASIDGASTLLQFIAEHDGKWTEEAVRELTRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
VDDVYAAALRHYAIEAAEWGKQVEHALSMRGAAEDIGLSSLLARIEEHGDEWTEEEIHEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCHHHHHHHH
QLLVDDVYARAIRLVEPLSDGQEEDLTRQEEVSALPEQEGGNREQMSKGTERSGEHKGDS
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCC
EQEPVVAAERAEPFIASSTDSPDGEQLHEGDTMDEEWRHNADMTDKERLPEEGVTDGERQ
CCCCCEEHHHCCCCEECCCCCCCCHHHCCCCCCCHHHHCCCCCCHHHCCCCCCCCCCHHH
RAVSPGKHVLPPLPYSYDALEPHISEEIMRLHHTKHHQSYVDGLNKAERMMAEARRTNNF
HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ELLKHWEREAAFNGSGHYLHTIFWHNMHPQGGGEPRGELRAQIERDFGSFAAFRRHFTEA
HHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AKSVEGVGWALLVWVPRAHRLEILQTEKHQLMTQWDTIPLLVLDVWEHAYYLQYKNDRGA
HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEEECCCCH
YIEHWWNVVNWRNVEARFAEARKLRWQPF
HHHHHHHHHCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]