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The map label for this gene is yvoA [H]

Identifier: 138895844

GI number: 138895844

Start: 2327342

End: 2328070

Strand: Reverse

Name: yvoA [H]

Synonym: GTNG_2203

Alternate gene names: 138895844

Gene position: 2328070-2327342 (Counterclockwise)

Preceding gene: 138895845

Following gene: 138895843

Centisome position: 65.57

GC content: 51.3

Gene sequence:

>729_bases
GTGATTGATAAACAATCTCCTGTTCCAATTTATTACCAGCTTGAGCAATATATGAAGGAGAAAATTGAAAAAGGAGAGTG
GCAGCCAGGGGAGATGATTCCGTCTGAGCGTGAGTTGGCGGAAACGTACGATATTAGCCGGATGACCGTTCGGCAGGCGG
TCAACAATTTGGTCAACGACGGCTACCTTGTTCGCCGGCGTGGAAAAGGAACGTTTGTCGCGGCGAAAAAAATTGAGCAG
CCGCTTAAAGGACTGACGAGCTTTTCCGAAGATATGCGGGCGCGTGGCATGGAGCCGGACACCGTTGTTCTTGGCTTTGA
AACGGTGCCGGCTTCAAAGAAACTGGCCGAATGGCTCGCTGTTAAGGAAGGGGACGCCCTTTACGAAATTCGCCGTCTCC
GCTTAGCCGACGGCTCGCCGATGGCGCTCGAGACGCTCTATATTCCGTGCGCATTGGCGCCTCATTTGACGCGCGAGATT
GTAAACGGTTCCGTGTATGAATTTATGGAAAAGGAAGTTGGATTAGCCATCGGCACTGCCGTTCAAGTGATTGAAGCGTC
CGTCGCCCGTAAGCTGGAAGTCGAACACTTGCAAGTGAAAGAAGGAGCTCCGGTGCTGTTGCTCGAACGCCGCACATACC
TTACTGACGGACGGCCACTGGAAGTTGTGAAATCAGTGTATCGCGGTGACCGATACAAATTCATCGTTGAAATGGAACGA
AGAAAATAA

Upstream 100 bases:

>100_bases
CTGCCGGCTTCGGCGCTTCATCTCCATCCGGATGTCACGATCATCGCCGACCAAGAGGCGCTGTCACTTATTCCAAACGA
ACAGCGGCAGGTGAAATCCC

Downstream 100 bases:

>100_bases
AAAGGGGGAATGTTTATGTTAGGATTTTTACAGCGTCTAGGAAAGGCGTTTATGCTGCCGATTGCCGTTTTGCCGGCGGC
TGGACTGTTGCTCCGGCTTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MIDKQSPVPIYYQLEQYMKEKIEKGEWQPGEMIPSERELAETYDISRMTVRQAVNNLVNDGYLVRRRGKGTFVAAKKIEQ
PLKGLTSFSEDMRARGMEPDTVVLGFETVPASKKLAEWLAVKEGDALYEIRRLRLADGSPMALETLYIPCALAPHLTREI
VNGSVYEFMEKEVGLAIGTAVQVIEASVARKLEVEHLQVKEGAPVLLLERRTYLTDGRPLEVVKSVYRGDRYKFIVEMER
RK

Sequences:

>Translated_242_residues
MIDKQSPVPIYYQLEQYMKEKIEKGEWQPGEMIPSERELAETYDISRMTVRQAVNNLVNDGYLVRRRGKGTFVAAKKIEQ
PLKGLTSFSEDMRARGMEPDTVVLGFETVPASKKLAEWLAVKEGDALYEIRRLRLADGSPMALETLYIPCALAPHLTREI
VNGSVYEFMEKEVGLAIGTAVQVIEASVARKLEVEHLQVKEGAPVLLLERRTYLTDGRPLEVVKSVYRGDRYKFIVEMER
RK
>Mature_242_residues
MIDKQSPVPIYYQLEQYMKEKIEKGEWQPGEMIPSERELAETYDISRMTVRQAVNNLVNDGYLVRRRGKGTFVAAKKIEQ
PLKGLTSFSEDMRARGMEPDTVVLGFETVPASKKLAEWLAVKEGDALYEIRRLRLADGSPMALETLYIPCALAPHLTREI
VNGSVYEFMEKEVGLAIGTAVQVIEASVARKLEVEHLQVKEGAPVLLLERRTYLTDGRPLEVVKSVYRGDRYKFIVEMER
RK

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=233, Percent_Identity=32.618025751073, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1790118, Length=208, Percent_Identity=30.2884615384615, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI87082252, Length=240, Percent_Identity=25.8333333333333, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790540, Length=231, Percent_Identity=28.5714285714286, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1788418, Length=234, Percent_Identity=28.2051282051282, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1790304, Length=163, Percent_Identity=30.6748466257669, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27609; Mature: 27609

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKQSPVPIYYQLEQYMKEKIEKGEWQPGEMIPSERELAETYDISRMTVRQAVNNLVND
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GYLVRRRGKGTFVAAKKIEQPLKGLTSFSEDMRARGMEPDTVVLGFETVPASKKLAEWLA
CEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH
VKEGDALYEIRRLRLADGSPMALETLYIPCALAPHLTREIVNGSVYEFMEKEVGLAIGTA
HCCCCHHHHHHHHHCCCCCCCEEHHEEECHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHH
VQVIEASVARKLEVEHLQVKEGAPVLLLERRTYLTDGRPLEVVKSVYRGDRYKFIVEMER
HHHHHHHHHHHHHHHHEEECCCCCEEEEECCHHCCCCCHHHHHHHHHCCCCEEEEEEEEC
RK
CC
>Mature Secondary Structure
MIDKQSPVPIYYQLEQYMKEKIEKGEWQPGEMIPSERELAETYDISRMTVRQAVNNLVND
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GYLVRRRGKGTFVAAKKIEQPLKGLTSFSEDMRARGMEPDTVVLGFETVPASKKLAEWLA
CEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH
VKEGDALYEIRRLRLADGSPMALETLYIPCALAPHLTREIVNGSVYEFMEKEVGLAIGTA
HCCCCHHHHHHHHHCCCCCCCEEHHEEECHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHH
VQVIEASVARKLEVEHLQVKEGAPVLLLERRTYLTDGRPLEVVKSVYRGDRYKFIVEMER
HHHHHHHHHHHHHHHHEEECCCCCEEEEECCHHCCCCCHHHHHHHHHCCCCEEEEEEEEC
RK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]